Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G110300 Manihot esculenta HOM05D007709 ORTHO05D009577 1.8e-39 165.6 92 100.0
QL03p016612 Quercus lobata HOM05D007709 ORTHO05D009577 2.1e-16 89.0 72 52.8
QL03p016617 Quercus lobata HOM05D007709 ORTHO05D009577 2.1e-16 89.0 72 52.8
QL11p056189 Quercus lobata HOM05D007709 ORTHO05D009577 2.1e-16 89.0 72 52.8
QL11p056219 Quercus lobata HOM05D007709 ORTHO05D009577 2.1e-16 89.0 72 52.8
RcHm_v2.0_Chr6g0280851 Rosa chinensis HOM05D007709 ORTHO05D009577 2.8e-16 88.6 66 59.1
Thhalv10000588m.g Eutrema salsugineum HOM05D007709 ORTHO05D009577 3.6e-16 88.2 67 62.7
BcaC01g04855 Brassica carinata HOM05D007709 ORTHO05D009577 4.7e-16 87.8 72 61.1
C03p33100 Brassica napus HOM05D007709 ORTHO05D009577 4.7e-16 87.8 72 61.1
BolC3t15636H Brassica oleracea HOM05D007709 ORTHO05D009577 4.7e-16 87.8 72 61.1
BcaB01g02955 Brassica carinata HOM05D007709 ORTHO05D009577 6.1e-16 87.4 72 59.7
AL4G13130 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 8.0e-16 87.0 68 61.8
Cfa005362 Carpinus fangiana HOM05D007709 ORTHO05D009577 1.4e-15 86.3 70 50.0
AT2G23240 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 1.8e-15 85.9 68 60.3
QL11p056180 Quercus lobata HOM05D007709 ORTHO05D009577 1.8e-15 85.9 68 54.4
Sc14g0002460 Simmondsia chinensis HOM05D007709 ORTHO05D009577 1.8e-15 85.9 92 59.8
A03p27450 Brassica napus HOM05D007709 ORTHO05D009577 2.3e-15 85.5 72 59.7
BraA03t11957Z Brassica rapa HOM05D007709 ORTHO05D009577 2.3e-15 85.5 72 59.7
TWI31G1411 Tripterygium wilfordii HOM05D007709 ORTHO05D009577 3.0e-15 85.1 72 54.2
AL4G40360 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 6.8e-15 84.0 62 61.3
Migut.N01357 Erythranthe guttata HOM05D007709 ORTHO05D009577 8.8e-15 83.6 71 53.5
Haze_02011 Corylus avellana HOM05D007709 ORTHO05D009577 1.2e-14 83.2 68 52.9
Peaxi162Scf00362g00133 Petunia axillaris HOM05D007709 ORTHO05D009577 1.5e-14 82.8 74 51.4
AT2G42000 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 2.0e-14 82.4 68 58.8
CAN.G1725.3 Capsicum annuum HOM05D007709 ORTHO05D009577 2.6e-14 82.0 66 53.0
Eucgr.I01530 Eucalyptus grandis HOM05D007709 ORTHO05D009577 2.6e-14 82.0 66 54.5
Aqoxy6G01622 Aquilegia oxysepala HOM05D007709 ORTHO05D009577 3.4e-14 81.6 69 58.0
Ciclev10029706m.g Citrus clementina HOM05D007709 ORTHO05D009577 3.4e-14 81.6 66 62.1
Sp4g00020 Schrenkiella parvula HOM05D007709 ORTHO05D009577 4.4e-14 81.3 67 58.2
Glyma.18G157800 Glycine max HOM05D007709 ORTHO05D009577 7.5e-14 80.5 58 56.9
CiPaw.05G092600 Carya illinoinensis HOM05D007709 ORTHO05D009577 9.8e-14 80.1 69 50.7
Potri.009G167700 Populus trichocarpa HOM05D007709 ORTHO05D009577 9.8e-14 80.1 93 47.3
PSO541G6469 Papaver somniferum HOM05D007709 ORTHO05D009577 1.3e-13 79.7 94 60.6
PGR142G3111 Punica granatum HOM05D007709 ORTHO05D009577 1.3e-13 79.7 71 50.7
Cfa005363 Carpinus fangiana HOM05D007709 ORTHO05D009577 1.7e-13 79.3 66 54.5
Thecc.02G145500 Theobroma cacao HOM05D007709 ORTHO05D009577 1.7e-13 79.3 84 59.5
CSS0014347 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 2.2e-13 79.0 71 53.5
Carub.0004s2433 Capsella rubella HOM05D007709 ORTHO05D009577 2.2e-13 79.0 68 54.4
Cpa.g.sc60.30 Carica papaya HOM05D007709 ORTHO05D009577 2.2e-13 79.0 71 53.5
Ah.01g017550 Amaranthus hybridus HOM05D007709 ORTHO05D009577 2.8e-13 78.6 66 56.1
Cc04_g09140 Coffea canephora HOM05D007709 ORTHO05D009577 3.7e-13 78.2 82 54.9
COL.COLO4_34305 Corchorus olitorius HOM05D007709 ORTHO05D009577 3.7e-13 78.2 65 58.5
Carub.0004s0246 Capsella rubella HOM05D007709 ORTHO05D009577 4.9e-13 77.8 63 58.7
HanXRQChr16g0501351 Helianthus annuus HOM05D007709 ORTHO05D009577 4.9e-13 77.8 92 42.4
THA.LOC104807798 Tarenaya hassleriana HOM05D007709 ORTHO05D009577 4.9e-13 77.8 88 61.4
Nitab4.5_0000783g0120 Nicotiana tabacum HOM05D007709 ORTHO05D009577 6.3e-13 77.4 71 50.7
Prupe.8G179200 Prunus persica HOM05D007709 ORTHO05D009577 6.3e-13 77.4 56 62.5
Os10g0542100 Oryza sativa ssp. japonica HOM05D007709 ORTHO05D009577 8.3e-13 77.0 63 57.1
CANSAT25G2121 Cannabis sativa HOM05D007709 ORTHO05D009577 1.1e-12 76.6 62 51.6
DCAR_026620 Daucus carota HOM05D007709 ORTHO05D009577 1.1e-12 76.6 61 57.4
CARHR292840 Cardamine hirsuta HOM05D007709 ORTHO05D009577 1.8e-12 75.9 62 51.6
QL03p016621 Quercus lobata HOM05D007709 ORTHO05D009577 1.8e-12 75.9 67 49.3
QL11p056199 Quercus lobata HOM05D007709 ORTHO05D009577 1.8e-12 75.9 67 49.3
Thecc.02G145600 Theobroma cacao HOM05D007709 ORTHO05D009577 1.8e-12 75.9 64 56.2
arahy.Tifrunner.gnm1.ann1.9G47NZ Arachis hypogaea HOM05D007709 ORTHO05D009577 7.0e-12 73.9 55 61.8
Nn5g30992 Nelumbo nucifera HOM05D007709 ORTHO05D009577 7.0e-12 73.9 67 50.7
Lj3g0026575 Lotus japonicus HOM05D007709 ORTHO05D009577 9.2e-12 73.6 66 56.1
Atru.chr5.3536 Acer truncatum HOM05D007709 ORTHO05D009577 1.6e-11 72.8 67 52.2
Gohir.A04G112024 Gossypium hirsutum HOM05D007709 ORTHO05D009577 1.6e-11 72.8 60 55.0
Gohir.D04G152500 Gossypium hirsutum HOM05D007709 ORTHO05D009577 1.6e-11 72.8 60 55.0
Gorai.002G013700 Gossypium raimondii HOM05D007709 ORTHO05D009577 1.6e-11 72.8 63 54.0
Gorai.012G139300 Gossypium raimondii HOM05D007709 ORTHO05D009577 1.6e-11 72.8 60 55.0
HPP92_022159 Vanilla planifolia HOM05D007709 ORTHO05D009577 5.9e-11 70.9 65 50.8
arahy.Tifrunner.gnm1.ann1.0QS5M4 Arachis hypogaea HOM05D007709 ORTHO05D009577 7.8e-11 70.5 55 58.2
MELO3C013494.2 Cucumis melo HOM05D007709 ORTHO05D009577 2.3e-10 68.9 70 51.4
Sed0006301 Sechium edule HOM05D007709 ORTHO05D009577 2.3e-10 68.9 68 50.0
CSS0015820 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 2.9e-10 68.6 71 49.3
MD05G1135300 Malus domestica HOM05D007709 ORTHO05D009577 5.0e-10 67.8 61 49.2
Rhsim05G0047200 Rhododendron simsii HOM05D007709 ORTHO05D009577 6.6e-10 67.4 79 44.3
Medtr8g012330 Medicago truncatula HOM05D001671 ORTHO05D001844 1.1e-09 66.6 59 49.2
Haze_22002 Corylus avellana HOM05D022555 ORTHO05D009577 1.5e-09 66.2 62 46.8
Sopen01g054290 Solanum pennellii HOM05D007709 ORTHO05D009577 1.9e-09 65.9 68 45.6
TPR.G29157 Trifolium pratense HOM05D007709 ORTHO05D009577 1.9e-09 65.9 58 48.3
Lalb_Chr07g0194411 Lupinus albus HOM05D007709 ORTHO05D009577 7.3e-09 63.9 53 49.1
Psat3g150320 Pisum sativum HOM05D007709 ORTHO05D009577 2.1e-08 62.4 56 50.0
FAN27G0823 Fragaria x ananassa HOM05D007709 ORTHO05D009577 3.6e-08 61.6 66 45.5
SalBow5G1409 Salvia bowleyana HOM05D007709 ORTHO05D009577 3.6e-08 61.6 92 40.2
SalBow5G2601 Salvia bowleyana HOM05D007709 ORTHO05D009577 3.6e-08 61.6 92 40.2
Eucgr.G00245 Eucalyptus grandis HOM05D007709 ORTHO05D009577 1.0e-07 60.1 63 47.6
FAN15G1429 Fragaria x ananassa HOM05D007709 ORTHO05D009577 1.0e-07 60.1 73 42.5
FAN24G0243 Fragaria x ananassa HOM05D007709 ORTHO05D009577 1.4e-07 59.7 73 42.5
Gohir.D01G011700 Gossypium hirsutum HOM05D007709 ORTHO05D009577 1.4e-07 59.7 61 47.5
DCAR_026621 Daucus carota HOM05D000628 ORTHO05D009577 3.0e-07 58.5 52 53.8
FvH4_2g16730 Fragaria vesca HOM05D007709 ORTHO05D009577 1.2e-06 56.6 66 43.9


User provided reference genes

Program Settings