Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G104500 Manihot esculenta HOM05D003229 ORTHO05D003835 8.8e-232 807.0 532 100.0
Ciclev10028298m.g Citrus clementina HOM05D003229 ORTHO05D003835 1.4e-83 314.7 547 44.1
QL01p018824 Quercus lobata HOM05D003229 ORTHO05D003835 6.8e-83 312.4 534 45.7
Atru.chr3.3041 Acer truncatum HOM05D003229 ORTHO05D003835 4.9e-81 306.2 503 48.3
Thecc.05G214900 Theobroma cacao HOM05D003229 ORTHO05D003835 4.1e-80 303.1 522 46.0
Gohir.A13G086615 Gossypium hirsutum HOM05D003229 ORTHO05D003835 6.6e-78 295.8 529 44.6
Sabra09G0121900 Salix brachista HOM05D003229 ORTHO05D003835 1.5e-77 294.7 539 46.2
Cpa.g.sc103.35 Carica papaya HOM05D003229 ORTHO05D003835 3.3e-77 293.5 501 44.1
Haze_23616 Corylus avellana HOM05D003229 ORTHO05D003835 1.6e-76 291.2 502 43.0
Potri.009G155500 Populus trichocarpa HOM05D003229 ORTHO05D003835 4.7e-76 289.7 600 43.8
Manes.04G063962 Manihot esculenta HOM05D003229 ORTHO05D003835 1.8e-75 287.7 351 53.3
Duzib177G0022 Durio zibethinus HOM05D003229 ORTHO05D003835 4.0e-75 286.6 507 42.4
Duzib128G0535 Durio zibethinus HOM05D003229 ORTHO05D003835 5.2e-75 286.2 527 42.9
Gohir.D13G092701 Gossypium hirsutum HOM05D003229 ORTHO05D003835 6.8e-75 285.8 527 43.6
TWI31G0893 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 6.8e-75 285.8 504 42.1
Gorai.010G139700 Gossypium raimondii HOM05D003229 ORTHO05D003835 3.4e-74 283.5 527 43.5
Cfa010230 Carpinus fangiana HOM05D003229 ORTHO05D003835 4.4e-74 283.1 500 42.2
GSVIVG01037516001 Vitis vinifera HOM05D003229 ORTHO05D003835 4.9e-73 279.6 415 45.1
CiPaw.13G105300 Carya illinoinensis HOM05D003229 ORTHO05D003835 6.4e-73 279.3 519 40.3
RcHm_v2.0_Chr6g0255381 Rosa chinensis HOM05D003229 ORTHO05D003835 7.3e-69 265.8 502 46.6
MD03G1161300 Malus domestica HOM05D003229 ORTHO05D003835 2.8e-68 263.8 504 46.2
Potri.004G193500 Populus trichocarpa HOM05D003229 ORTHO05D003835 8.0e-68 262.3 544 46.3
TWI79G1121 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 1.3e-62 245.0 425 42.8
arahy.Tifrunner.gnm1.ann1.B3GIUW Arachis hypogaea HOM05D003229 ORTHO05D003835 2.3e-62 244.2 505 42.6
FvH4_2g05241 Fragaria vesca HOM05D003229 ORTHO05D003835 4.3e-61 240.0 502 44.6
FAN24G0320 Fragaria x ananassa HOM05D003229 ORTHO05D003835 9.5e-61 238.8 502 44.4
FAN27G0679 Fragaria x ananassa HOM05D003229 ORTHO05D003835 2.8e-60 237.3 502 44.8
Lalb_Chr17g0347381 Lupinus albus HOM05D003229 ORTHO05D003835 3.6e-60 236.9 506 41.5
Hma1.2p1_0218F.1_g092270 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 1.4e-59 235.0 535 36.3
Nn2g14458 Nelumbo nucifera HOM05D003229 ORTHO05D003835 7.5e-58 229.2 549 41.3
arahy.Tifrunner.gnm1.ann1.M286MP Arachis hypogaea HOM05D003229 ORTHO05D003835 4.9e-57 226.5 505 41.0
CSS0045009 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 1.2e-55 221.9 316 53.2
Eucgr.J00598 Eucalyptus grandis HOM05D003229 ORTHO05D003835 1.7e-54 218.0 550 38.2
CANSAT35G0213 Cannabis sativa HOM05D003229 ORTHO05D003835 2.3e-54 217.6 481 43.2
Phvul.006G006900 Phaseolus vulgaris HOM05D003229 ORTHO05D003835 6.6e-54 216.1 396 43.7
Solyc06g073810.4 Solanum lycopersicum HOM05D003229 ORTHO05D003835 2.5e-53 214.2 439 43.5
TAR636G2352 Trochodendron aralioides HOM05D003229 ORTHO05D003835 5.6e-53 213.0 575 37.2
Oeu048813.5 Olea europaea HOM05D003229 ORTHO05D003835 4.7e-52 209.9 410 43.7
EL10Ac7g16254 Beta vulgaris HOM05D003229 ORTHO05D003835 1.8e-51 208.0 500 40.2
Oeu048812.1 Olea europaea HOM05D003229 ORTHO05D003835 4.0e-51 206.8 410 43.4
Oeu058180.2 Olea europaea HOM05D003229 ORTHO05D003835 2.0e-50 204.5 515 38.6
Hund20968 Selenicereus undatus HOM05D003229 ORTHO05D003835 4.4e-50 203.4 422 43.6
Glyma.20G055200 Glycine max HOM05D003229 ORTHO05D003835 5.8e-50 203.0 397 46.1
PGSC0003DMG400002995 Solanum tuberosum HOM05D003229 ORTHO05D003835 7.6e-50 202.6 389 42.4
Lj6g0007817 Lotus japonicus HOM05D003229 ORTHO05D003835 2.2e-49 201.1 396 41.2
PGSC0003DMG400005910 Solanum tuberosum HOM05D003229 ORTHO05D003835 2.2e-49 201.1 347 50.1
Cc01_g08150 Coffea canephora HOM05D003229 ORTHO05D003835 4.9e-49 199.9 497 38.0
Gohir.D13G092751 Gossypium hirsutum HOM05D003229 ORTHO05D003835 4.9e-49 199.9 459 36.6
AUR62020197 Chenopodium quinoa HOM05D003229 ORTHO05D003835 1.4e-48 198.4 406 38.2
Sopen06g030210 Solanum pennellii HOM05D003229 ORTHO05D003835 1.9e-48 198.0 503 42.3
Migut.N02427 Erythranthe guttata HOM05D003229 ORTHO05D003835 9.2e-48 195.7 394 43.7
THA.LOC104810972 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 9.2e-48 195.7 433 35.8
Sabra04G0131600 Salix brachista HOM05D003229 ORTHO05D003835 2.1e-47 194.5 283 52.7
Solyc11g071690.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 2.1e-47 194.5 503 38.4
AUR62001585 Chenopodium quinoa HOM05D003229 ORTHO05D003835 1.3e-46 191.8 401 38.2
Glyma.13G028000 Glycine max HOM05D003229 ORTHO05D003835 1.3e-46 191.8 551 34.7
Sc21g0006640 Simmondsia chinensis HOM05D003229 ORTHO05D003835 1.7e-46 191.4 423 37.1
Nitab4.5_0010116g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 3.9e-46 190.3 522 36.0
Dinv32144 Davidia involucrata HOM05D003229 ORTHO05D003835 1.1e-45 188.7 311 46.3
Gorai.010G139800 Gossypium raimondii HOM05D003229 ORTHO05D003835 5.6e-45 186.4 459 37.0
Peaxi162Scf01091g00018 Petunia axillaris HOM05D003229 ORTHO05D003835 5.6e-45 186.4 437 41.2
MELO3C017380.2 Cucumis melo HOM05D003229 ORTHO05D003835 1.6e-44 184.9 576 35.4
SGA_v2.0_scaffold16G07545 Striga asiatica HOM05D003229 ORTHO05D003835 2.8e-44 184.1 504 36.7
FAN20G2341 Fragaria x ananassa HOM05D003229 ORTHO05D003835 4.7e-44 183.3 641 33.7
MSTRG.12405 Avicennia marina HOM05D003229 ORTHO05D003835 8.1e-44 182.6 521 36.5
VMungo0540G0117 Vigna mungo HOM05D003229 ORTHO05D003835 4.0e-43 180.3 400 38.8
Sed0019248 Sechium edule HOM05D003229 ORTHO05D003835 1.5e-42 178.3 540 33.9
Sopen11g029360 Solanum pennellii HOM05D003229 ORTHO05D003835 4.4e-42 176.8 301 47.5
C03p68590 Brassica napus HOM05D003229 ORTHO05D003835 2.9e-41 174.1 497 33.2
BolC3t19117H Brassica oleracea HOM05D003229 ORTHO05D003835 2.9e-41 174.1 497 33.2
Ah.08g222380 Amaranthus hybridus HOM05D003229 ORTHO05D003835 3.8e-41 173.7 533 35.5
AL5G21520 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 4.9e-41 173.3 500 34.8
HanXRQChr05g0137001 Helianthus annuus HOM05D003229 ORTHO05D003835 8.4e-41 172.6 359 42.1
AT3G43590 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 1.9e-40 171.4 554 35.4
PSO384G4356 Papaver somniferum HOM05D003229 ORTHO05D003835 3.2e-40 170.6 436 35.1
BraA06t25329Z Brassica rapa HOM05D003229 ORTHO05D003835 4.2e-40 170.2 496 33.3
SGA_v2.0_scaffold82G26251 Striga asiatica HOM05D003229 ORTHO05D003835 7.1e-40 169.5 296 47.0
FAN15G3758 Fragaria x ananassa HOM05D003229 ORTHO05D003835 9.3e-40 169.1 648 32.4
Ca_06127_v3 Cicer arietinum L. HOM05D003229 ORTHO05D003835 3.5e-39 167.2 461 36.4
A06p22470 Brassica napus HOM05D003229 ORTHO05D003835 7.8e-39 166.0 578 30.4
A06p22530 Brassica napus HOM05D003229 ORTHO05D003835 7.8e-39 166.0 578 30.4
Rhsim13G0199400 Rhododendron simsii HOM05D003229 ORTHO05D003835 3.0e-38 164.1 513 34.7
THA.LOC104799740 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 3.0e-38 164.1 478 33.3
ECA238G1805 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.9e-38 163.7 327 45.3
MBI11_g25050_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 8.7e-38 162.5 460 34.3
PSO339G4047 Papaver somniferum HOM05D003229 ORTHO05D003835 1.1e-37 162.2 462 34.8
Lsat_1_v5_gn_0_39260 Lactuca sativa HOM05D003229 ORTHO05D003835 5.6e-37 159.8 447 34.9
Actinidia12901 Actinidia chinensis HOM05D003229 ORTHO05D003835 9.6e-37 159.1 412 33.7
Sp5g17570 Schrenkiella parvula HOM05D003229 ORTHO05D003835 9.6e-37 159.1 502 32.1
TPR.G15596 Trifolium pratense HOM05D003229 ORTHO05D003835 9.6e-37 159.1 447 36.9
Carub.0005s0918 Capsella rubella HOM05D003229 ORTHO05D003835 1.6e-36 158.3 302 36.4
CsaV3_1G004530 Cucumis sativus L. HOM05D003229 ORTHO05D003835 4.8e-36 156.8 348 46.6
Carub.0005s0931 Capsella rubella HOM05D003229 ORTHO05D003835 8.1e-36 156.0 515 31.1
Lj2C839T18 Lonicera japonica HOM05D003229 ORTHO05D003835 1.1e-35 155.6 192 52.6
CSS0043544 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 2.4e-35 154.5 309 41.1
Sabra04G0131800 Salix brachista HOM05D003229 ORTHO05D003835 2.4e-35 154.5 213 46.0
CDE05G3619 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 3.1e-35 154.1 327 42.2
Peaxi162Scf00355g00005 Petunia axillaris HOM05D003229 ORTHO05D003835 1.2e-34 152.1 395 32.9
CDE01G0204 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 2.0e-34 151.4 329 44.7
LjContig00564g0024504 Lotus japonicus HOM05D003229 ORTHO05D003835 2.6e-34 151.0 328 34.5
QL02p079790 Quercus lobata HOM05D003229 ORTHO05D003835 2.6e-34 151.0 212 50.5
HanXRQChr03g0089231 Helianthus annuus HOM05D003229 ORTHO05D003835 1.3e-33 148.7 339 38.6
TPR.G13300 Trifolium pratense HOM05D003229 ORTHO05D003835 3.8e-33 147.1 519 33.1
AL5G21420 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 4.9e-33 146.7 203 42.9
CARHR287360 Cardamine hirsuta HOM05D003229 ORTHO05D003835 6.4e-33 146.4 499 30.7
ATR0697G070 Amborella trichopoda HOM05D003229 ORTHO05D003835 3.2e-32 144.1 321 46.4
ECA240G3284 Erigeron canadensis HOM05D003229 ORTHO05D003835 3.2e-32 144.1 283 46.3
Gohir.A13G089500 Gossypium hirsutum HOM05D003229 ORTHO05D003835 5.4e-32 143.3 187 44.4
Aa31LG4G13390 Aethionema arabicum HOM05D003229 ORTHO05D003835 2.1e-31 141.4 306 32.4
Thhalv10019590m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 3.5e-31 140.6 399 33.3
PGR119G2320 Punica granatum HOM05D003229 ORTHO05D003835 3.5e-31 140.6 605 32.7
DCAR_012260 Daucus carota HOM05D003229 ORTHO05D003835 6.0e-31 139.8 473 32.8
ClCG06G014150 Citrullus lanatus HOM05D003229 ORTHO05D003835 1.3e-30 138.7 588 28.7
Thhalv10020505m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 1.8e-30 138.3 521 31.1
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 3.0e-30 137.5 417 35.7
Lsat_1_v5_gn_3_111681 Lactuca sativa HOM05D003229 ORTHO05D003835 8.7e-30 136.0 312 48.7
Nitab4.5_0000875g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 8.7e-30 136.0 444 33.1
CSS0010675 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 1.1e-29 135.6 202 39.6
Sed0028007 Sechium edule HOM05D003229 ORTHO05D003835 1.1e-29 135.6 205 43.4
Nitab4.5_0013078g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 1.4e-27 128.6 444 31.5
CARHR267130 Cardamine hirsuta HOM05D003229 ORTHO05D003835 3.1e-27 127.5 158 45.6
Prupe.6G179900 Prunus persica HOM05D003229 ORTHO05D003835 6.9e-27 126.3 323 36.8
Rhsim01G0198100 Rhododendron simsii HOM05D003229 ORTHO05D003835 1.5e-26 125.2 447 29.5
HPP92_026334 Vanilla planifolia HOM05D003229 ORTHO05D003835 2.0e-26 124.8 308 45.5
Lalb_Chr13g0294131 Lupinus albus HOM05D003229 ORTHO05D003835 3.4e-26 124.0 290 36.6
GSVIVG01022494001 Vitis vinifera HOM05D003229 ORTHO05D003835 3.4e-26 124.0 235 37.0
Zm00001eb200300 Zea mays HOM05D003229 ORTHO05D003835 4.5e-26 123.6 423 41.6
vmacro14302 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 5.8e-26 123.2 147 49.7
Psat2g023800 Pisum sativum HOM05D003229 ORTHO05D003835 1.3e-25 122.1 303 35.0
Ciclev10011928m.g Citrus clementina HOM05D003229 ORTHO05D003835 6.4e-25 119.8 237 42.6
Nitab4.5_0002498g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 1.4e-24 118.6 504 32.1
Potri.016G063800 Populus trichocarpa HOM05D003229 ORTHO05D003835 1.3e-22 112.1 155 43.2
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 5.1e-22 110.2 221 35.7
QL08p055973 Quercus lobata HOM05D006567 ORTHO05D015939 5.1e-22 110.2 78 61.5
TWI74G0877 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 6.7e-22 109.8 182 39.0
SEGI_34455 Sequoiadendron giganteum HOM05D003229 ORTHO05D003835 8.7e-22 109.4 345 32.2
Aqoxy1G00567 Aquilegia oxysepala HOM05D003229 ORTHO05D003835 3.3e-21 107.5 453 36.4
Hma1.2p1_0127F.1_g059620 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 5.6e-21 106.7 288 39.9
Zm00001eb114310 Zea mays HOM05D003229 ORTHO05D003835 7.4e-21 106.3 316 46.5
COL.COLO4_29455 Corchorus olitorius HOM05D003229 ORTHO05D003835 2.1e-20 104.8 205 36.1
Atru.chr8.1245 Acer truncatum HOM05D003229 ORTHO05D003835 2.8e-20 104.4 136 38.2
AT3G43490 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 5.3e-19 100.1 202 34.2
vmacro04054 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 6.9e-19 99.8 399 32.1
Os11g0573200 Oryza sativa ssp. japonica HOM05D003229 ORTHO05D003835 1.5e-18 98.6 186 50.5
Duzib128G1455 Durio zibethinus HOM05D003229 ORTHO05D003835 7.6e-18 96.3 254 28.3
CANSAT54G2724 Cannabis sativa HOM05D003229 ORTHO05D003835 6.5e-17 93.2 198 33.8
Psat5g107520 Pisum sativum HOM05D003229 ORTHO05D003835 1.1e-16 92.4 137 57.7
MSTRG.26568 Avicennia marina HOM05D003229 ORTHO05D003835 3.2e-16 90.9 164 39.0
CBR_g8477 Chara braunii HOM05D003229 ORTHO05D000407 3.2e-16 90.9 208 34.6
Gohir.D04G093700 Gossypium hirsutum HOM05D003229 ORTHO05D003835 3.2e-16 90.9 255 27.8
Mapoly0019s0115 Marchantia polymorpha HOM05D003229 ORTHO05D003835 9.3e-16 89.4 318 35.2
AagrBONN_evm.TU.Sc2ySwM_368.3251 Anthoceros agrestis HOM05D003229 ORTHO05D003835 7.9e-15 86.3 107 43.9
Os11g0575200 Oryza sativa ssp. japonica HOM05D003229 ORTHO05D003835 1.0e-14 85.9 146 41.1
Gorai.009G396300 Gossypium raimondii HOM05D003229 ORTHO05D003835 1.8e-14 85.1 239 28.0
A09p57240 Brassica napus HOM05D003229 ORTHO05D003835 3.0e-14 84.3 170 33.5
BraA09t41117Z Brassica rapa HOM05D003229 ORTHO05D003835 3.3e-13 80.9 170 33.5
BcaC07g41025 Brassica carinata HOM05D003229 ORTHO05D003835 1.3e-12 79.0 167 34.7
C08p40280 Brassica napus HOM05D003229 ORTHO05D003835 1.3e-12 79.0 167 34.7
BolC8t51596H Brassica oleracea HOM05D003229 ORTHO05D003835 1.3e-12 79.0 167 34.7
MBI05_g37661_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 1.6e-12 78.6 193 34.2
Thhalv10002168m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 1.1e-11 75.9 273 34.4
PGSC0003DMG401021491 Solanum tuberosum HOM05D024157 ORTHO05D025896 1.1e-11 75.9 81 42.0
Thecc.05G181700 Theobroma cacao HOM05D003229 ORTHO05D003835 1.8e-11 75.1 134 32.8
Sopen01g025320 Solanum pennellii HOM05D000006 ORTHO05D000001 2.4e-11 74.7 62 51.6
Thhalv10023543m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 5.3e-11 73.6 384 29.7
COL.COLO4_15222 Corchorus olitorius HOM05D003229 ORTHO05D003835 1.2e-10 72.4 222 33.3
Solyc01g056750.1 Solanum lycopersicum HOM05D003229 ORTHO05D003835 1.5e-10 72.0 72 43.1
Dinv25091 Davidia involucrata HOM05D003229 ORTHO05D003835 2.0e-10 71.6 82 42.7
EL10Ac5g11782 Beta vulgaris HOM05D003229 ORTHO05D003835 4.5e-10 70.5 217 25.8
Gohir.A04G056400 Gossypium hirsutum HOM05D003229 ORTHO05D003835 4.5e-10 70.5 131 30.5
Pp3c2_2680 Physcomitrium patens HOM05D003229 ORTHO05D003835 4.5e-10 70.5 56 50.0
Pp3c1_33300 Physcomitrium patens HOM05D003229 ORTHO05D003835 8.5e-09 66.2 56 46.4
AUR62036294 Chenopodium quinoa HOM05D003229 ORTHO05D003835 1.9e-08 65.1 160 26.9
Sp4g01780 Schrenkiella parvula HOM05D003229 ORTHO05D003835 7.2e-08 63.2 129 32.6
BcaB01g02976 Brassica carinata HOM05D003229 ORTHO05D003835 3.6e-07 60.8 409 22.7
AUR62038407 Chenopodium quinoa HOM05D003229 ORTHO05D003835 7.9e-07 59.7 166 29.5
Hund15039 Selenicereus undatus HOM05D003229 ORTHO05D003835 1.3e-06 58.9 166 24.1
CSS0028132 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 1.8e-06 58.5 115 36.5
COL.COLO4_15223 Corchorus olitorius HOM05D003229 ORTHO05D003835 1.8e-06 58.5 154 33.1
C03p32850 Brassica napus HOM05D003229 ORTHO05D003835 5.1e-06 57.0 274 24.5
BolC3t15620H Brassica oleracea HOM05D003229 ORTHO05D003835 6.7e-06 56.6 274 24.5


User provided reference genes

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