Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 2.4e-83 312.0 147 100.0
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 1.1e-72 276.6 142 88.7
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 6.9e-70 267.3 143 86.0
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 1.2e-69 266.5 143 86.0
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.5e-69 266.2 143 85.3
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 7.6e-69 263.8 147 81.6
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.0e-68 263.5 146 83.6
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 2.2e-68 262.3 142 86.6
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 2.9e-68 261.9 137 83.2
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 8.4e-68 260.4 149 81.9
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 1.4e-67 259.6 144 81.9
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 1.9e-67 259.2 143 81.1
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 2.5e-67 258.8 137 82.5
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 3.2e-67 258.5 147 79.6
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 4.2e-67 258.1 146 82.2
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 5.5e-67 257.7 142 82.4
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 1.6e-66 256.1 141 83.0
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 2.1e-66 255.8 144 80.6
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 2.1e-66 255.8 144 80.6
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 2.1e-66 255.8 139 82.0
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 2.7e-66 255.4 145 78.6
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 6.0e-66 254.2 140 82.1
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 2.3e-65 252.3 143 80.4
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 3.0e-65 251.9 146 78.8
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 5.1e-65 251.1 141 82.3
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 5.1e-65 251.1 146 78.1
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 6.7e-65 250.8 141 83.7
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 1.5e-64 249.6 143 79.7
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 2.5e-64 248.8 143 80.4
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 4.8e-63 244.6 143 79.0
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 8.2e-63 243.8 143 76.2
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 8.2e-63 243.8 138 79.7
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 1.1e-62 243.4 147 76.9
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 1.1e-62 243.4 145 77.9
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 1.4e-62 243.0 140 79.3
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 1.4e-62 243.0 145 77.2
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 2.4e-62 242.3 144 76.4
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 3.1e-62 241.9 142 76.1
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 9.0e-62 240.4 143 75.5
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 2.0e-61 239.2 143 76.2
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 2.6e-61 238.8 143 77.6
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 2.6e-61 238.8 147 72.1
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 4.5e-61 238.0 143 76.9
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 1.7e-60 236.1 145 74.5
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 2.9e-60 235.3 135 78.5
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 3.8e-60 235.0 139 77.0
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 5.0e-60 234.6 133 81.2
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 5.0e-60 234.6 144 74.3
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 8.5e-60 233.8 145 73.8
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 1.1e-59 233.4 139 77.0
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.9e-59 232.6 146 74.7
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 2.5e-59 232.3 216 56.5
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 5.5e-59 231.1 140 75.0
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 2.1e-58 229.2 145 73.1
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 2.1e-58 229.2 145 72.4
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 2.1e-58 229.2 142 73.2
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 2.7e-58 228.8 145 73.1
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 3.6e-58 228.4 145 75.2
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 4.6e-58 228.0 145 75.2
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 1.4e-57 226.5 145 74.5
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 3.0e-57 225.3 138 75.4
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 3.0e-57 225.3 138 75.4
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 3.0e-57 225.3 143 74.8
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 3.9e-57 224.9 143 70.6
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 8.8e-57 223.8 156 67.3
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 8.8e-57 223.8 145 71.7
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.1e-56 223.4 133 78.9
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 1.5e-56 223.0 134 73.9
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 1.5e-56 223.0 139 75.5
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 1.5e-56 223.0 138 74.6
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 1.9e-56 222.6 145 73.8
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 1.9e-56 222.6 139 75.5
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 1.9e-56 222.6 145 73.8
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 1.9e-56 222.6 145 73.8
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.9e-56 222.6 133 77.4
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 3.3e-56 221.9 140 73.6
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 3.3e-56 221.9 132 72.7
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 7.4e-56 220.7 139 75.5
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 7.4e-56 220.7 139 75.5
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 7.4e-56 220.7 139 75.5
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 9.7e-56 220.3 133 76.7
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 2.2e-55 219.2 136 75.7
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.8e-55 218.8 129 77.5
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 4.8e-55 218.0 140 71.4
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 2.4e-54 215.7 138 71.0
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 6.9e-54 214.2 131 72.5
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 6.9e-54 214.2 141 70.2
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 9.1e-54 213.8 137 68.6
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 1.2e-53 213.4 131 76.3
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 1.5e-53 213.0 135 71.1
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 1.5e-53 213.0 135 71.1
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 1.5e-53 213.0 132 70.5
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 2.0e-53 212.6 131 72.5
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 2.0e-53 212.6 138 71.7
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 3.4e-53 211.8 138 71.0
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 1.0e-52 210.3 137 70.8
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 1.3e-52 209.9 146 65.1
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 1.3e-52 209.9 138 71.0
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 2.2e-52 209.1 138 68.8
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 3.8e-52 208.4 131 71.8
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 3.2e-51 205.3 133 70.7
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 1.0e-49 200.3 119 77.3
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 5.1e-49 198.0 132 72.0
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 5.1e-49 198.0 138 66.7
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 1.5e-48 196.4 141 58.2
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 4.4e-48 194.9 121 73.6
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 2.8e-47 192.2 141 56.7
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 4.1e-46 188.3 126 64.3
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 7.0e-46 187.6 132 64.4
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 3.4e-45 185.3 121 68.6
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 5.0e-44 181.4 112 74.1
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 2.5e-43 179.1 122 65.6
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 5.5e-43 177.9 144 55.6
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 2.8e-39 165.6 217 41.9
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 1.8e-38 162.9 126 61.9
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 9.1e-38 160.6 86 84.9
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 1.6e-34 149.8 135 54.8
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 4.0e-33 145.2 136 47.8
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 6.7e-33 144.4 82 79.3
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 6.7e-33 144.4 135 46.7
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 3.3e-32 142.1 134 47.0
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 1.3e-31 140.2 129 53.5
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 2.8e-31 139.0 80 81.2
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 4.8e-31 138.3 142 51.4
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 2.4e-30 136.0 91 70.3
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 2.9e-28 129.0 84 70.2
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 6.5e-28 127.9 122 49.2
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 8.5e-28 127.5 122 50.0
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 1.1e-27 127.1 122 50.0
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 5.5e-27 124.8 137 41.6
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 1.2e-24 117.1 144 39.6
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 1.5e-24 116.7 136 41.2
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 5.7e-24 114.8 162 38.3
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 9.8e-24 114.0 114 48.2
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 3.7e-23 112.1 134 41.8
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 8.3e-23 110.9 89 62.9
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 1.6e-21 106.7 95 51.6
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 2.8e-18 95.9 60 75.0
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.5e-16 90.1 56 73.2
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 2.0e-16 89.7 56 73.2
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 2.8e-15 85.9 133 30.1
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 1.8e-14 83.2 139 26.6
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 1.7e-12 76.6 106 35.8
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 8.6e-12 74.3 72 45.8
FvH4_3g26740 Fragaria vesca HOM05D005008 ORTHO05D006092 5.8e-08 61.6 57 52.6
Oeu026671.1 Olea europaea HOM05D005008 ORTHO05D006092 2.9e-07 59.3 36 72.2


User provided reference genes

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