Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 5.7e-161 570.9 286 100.0
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 2.9e-104 382.5 287 69.3
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 6.0e-102 374.8 293 67.2
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 5.1e-101 371.7 294 68.4
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 2.8e-99 365.9 293 66.2
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 2.3e-98 362.8 323 61.9
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 7.8e-94 347.8 287 63.4
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 7.8e-94 347.8 287 63.4
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 1.3e-93 347.1 292 64.0
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 8.6e-93 344.4 287 63.8
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 1.5e-92 343.6 287 63.1
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 5.6e-92 341.7 292 63.4
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 6.2e-91 338.2 287 64.1
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 8.1e-91 337.8 292 62.7
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 6.8e-90 334.7 287 63.1
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 1.2e-89 334.0 288 62.8
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 7.1e-87 324.7 287 62.0
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 2.1e-86 323.2 293 60.8
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 4.6e-86 322.0 265 63.4
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 3.1e-82 309.3 287 59.6
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 5.3e-82 308.5 287 58.9
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 6.9e-82 308.1 290 60.0
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 1.5e-81 307.0 256 62.9
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 2.0e-81 306.6 286 59.1
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 2.0e-81 306.6 287 58.2
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 7.6e-81 304.7 284 59.2
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 1.7e-80 303.5 293 57.0
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 2.2e-80 303.1 297 56.6
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 2.9e-80 302.8 287 57.1
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 3.8e-80 302.4 288 57.3
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 3.8e-80 302.4 298 57.0
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 6.4e-80 301.6 259 62.2
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.1e-79 300.8 259 62.2
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 1.4e-79 300.4 286 56.3
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 4.2e-79 298.9 337 51.0
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.9e-76 290.0 385 46.2
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 3.3e-76 289.3 291 54.6
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 4.3e-76 288.9 287 56.1
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 7.4e-76 288.1 287 56.1
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 9.6e-76 287.7 288 57.6
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 1.3e-75 287.3 259 60.2
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 1.2e-73 280.8 289 55.7
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.2e-73 280.8 398 44.0
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 2.0e-73 280.0 299 54.2
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 2.0e-73 280.0 268 57.1
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.4e-71 273.1 314 50.3
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.4e-71 273.1 314 50.3
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 5.5e-71 271.9 287 53.3
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 1.2e-70 270.8 291 56.7
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 6.0e-70 268.5 290 52.4
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 9.6e-68 261.2 304 50.7
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 4.8e-67 258.8 287 53.0
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 2.4e-66 256.5 212 67.5
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 3.1e-66 256.1 290 54.8
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 6.9e-66 255.0 290 54.5
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 1.2e-65 254.2 290 51.0
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 1.5e-65 253.8 287 51.6
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 2.9e-64 249.6 207 65.7
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 6.5e-64 248.4 259 54.4
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 1.2e-62 244.2 299 50.5
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 1.1e-58 231.1 232 54.7
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 3.1e-58 229.6 299 47.5
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 6.9e-58 228.4 294 44.6
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 6.9e-58 228.4 306 44.4
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 1.5e-57 227.3 287 48.4
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 3.4e-57 226.1 287 48.4
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 4.5e-57 225.7 284 47.9
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 1.3e-56 224.2 287 48.4
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 1.3e-56 224.2 287 48.4
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 2.2e-56 223.4 287 48.1
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 1.1e-55 221.1 294 45.2
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 1.4e-55 220.7 204 59.3
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 2.5e-55 219.9 302 46.4
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 4.2e-55 219.2 279 49.8
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 1.2e-54 217.6 245 51.0
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 1.6e-54 217.2 296 47.0
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 2.3e-53 213.4 238 51.3
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 5.1e-53 212.2 209 56.9
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 1.9e-52 210.3 288 46.5
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 1.9e-52 210.3 271 50.6
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 3.3e-52 209.5 225 54.2
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 5.7e-52 208.8 295 46.1
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 2.2e-51 206.8 290 45.2
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 3.7e-51 206.1 291 45.0
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 4.8e-51 205.7 171 62.0
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 4.8e-51 205.7 295 44.7
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.1e-50 204.5 221 51.1
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 1.8e-50 203.8 306 44.8
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 3.4e-49 199.5 240 48.8
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 5.0e-48 195.7 324 42.3
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 5.0e-48 195.7 324 41.0
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 3.6e-46 189.5 301 43.9
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 3.6e-46 189.5 288 44.8
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 6.1e-46 188.7 293 41.6
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 7.9e-46 188.3 179 58.1
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 1.8e-45 187.2 300 43.3
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 3.9e-45 186.0 156 62.8
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 8.8e-45 184.9 289 40.8
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 2.6e-44 183.3 230 46.1
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 9.7e-44 181.4 378 35.4
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 1.3e-43 181.0 289 40.5
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 1.8e-42 177.2 273 40.7
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 1.8e-42 177.2 287 40.4
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 9.1e-42 174.9 303 40.6
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 4.5e-41 172.6 275 42.5
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 1.3e-40 171.0 307 40.7
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 5.0e-40 169.1 237 44.3
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 2.5e-39 166.8 303 38.6
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 3.2e-39 166.4 294 39.1
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 3.6e-38 162.9 349 34.4
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 3.9e-37 159.5 326 36.5
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 6.7e-37 158.7 205 43.9
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 7.4e-36 155.2 280 37.1
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 1.3e-35 154.5 257 41.6
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 3.7e-35 152.9 212 42.5
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 5.3e-34 149.1 186 50.5
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 3.8e-32 142.9 166 54.2
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 6.1e-30 135.6 300 33.7
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 3.0e-29 133.3 256 38.7
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 8.8e-29 131.7 230 42.6
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 1.5e-28 131.0 252 37.7
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 4.4e-28 129.4 309 31.4
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.3e-27 127.9 283 36.7
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.4e-26 124.4 274 35.0
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 2.7e-25 120.2 331 33.2
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 1.9e-23 114.0 293 32.8
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 4.2e-23 112.8 122 53.3
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 1.8e-21 107.5 170 44.7
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 6.8e-21 105.5 170 44.1
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 2.0e-20 104.0 93 58.1
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 1.7e-19 100.9 185 35.7
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 2.2e-19 100.5 309 31.4
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 3.7e-19 99.8 308 30.5
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.8e-18 97.4 264 33.7
Sed0023885 Sechium edule HOM05D005413 ORTHO05D006536 4.1e-18 96.3 83 59.0
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 5.4e-18 95.9 208 35.6
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 9.1e-18 95.1 120 45.0
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 2.2e-16 90.5 118 46.6
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 3.8e-16 89.7 245 32.2
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 6.5e-16 89.0 172 37.8
Dinv03808 Davidia involucrata HOM05D005413 ORTHO05D006536 1.9e-15 87.4 94 45.7
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 2.1e-14 84.0 87 49.4
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 9.8e-12 75.1 53 71.7
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 2.7e-09 67.0 150 33.3
AUR62005612 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.1e-07 61.6 62 45.2
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 2.5e-07 60.5 69 46.4
Haze_15139 Corylus avellana HOM05D005413 ORTHO05D006536 3.3e-07 60.1 86 37.2


User provided reference genes

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