Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G101800 Manihot esculenta HOM05D009305 ORTHO05D010439 1.0e-41 172.9 87 100.0
QL02p087437 Quercus lobata HOM05D009305 ORTHO05D010439 1.4e-17 92.8 81 55.6
Potri.008G015800 Populus trichocarpa HOM05D003010 ORTHO05D010439 1.5e-16 89.4 80 55.0
CiPaw.04G169500 Carya illinoinensis HOM05D009305 ORTHO05D010439 7.6e-16 87.0 81 56.8
Nn8g39368 Nelumbo nucifera HOM05D003010 ORTHO05D010439 1.7e-15 85.9 91 51.6
Potri.008G015100 Populus trichocarpa HOM05D003010 ORTHO05D010439 2.2e-15 85.5 72 58.3
TAR625G0712 Trochodendron aralioides HOM05D003010 ORTHO05D010439 2.2e-15 85.5 81 58.0
DCAR_009212 Daucus carota HOM05D000639 ORTHO05D005966 3.8e-15 84.7 81 50.6
Atru.chr7.1234 Acer truncatum HOM05D009305 ORTHO05D010439 8.4e-15 83.6 88 53.4
CsaV3_1G029730 Cucumis sativus L. HOM05D003010 ORTHO05D010439 8.4e-15 83.6 82 56.1
Haze_25626 Corylus avellana HOM05D003010 ORTHO05D010439 1.1e-14 83.2 88 51.1
RcHm_v2.0_Chr2g0089271 Rosa chinensis HOM05D009305 ORTHO05D010439 1.4e-14 82.8 88 51.1
Eucgr.C01116 Eucalyptus grandis HOM05D009305 ORTHO05D010439 7.1e-14 80.5 81 54.3
Sed0015404 Sechium edule HOM05D009305 ORTHO05D010439 1.2e-13 79.7 80 56.2
Cfa003337 Carpinus fangiana HOM05D003010 ORTHO05D010439 3.5e-13 78.2 84 53.6
Rhsim01G0078400 Rhododendron simsii HOM05D003010 ORTHO05D010439 6.0e-13 77.4 89 49.4
Thecc.09G121000 Theobroma cacao HOM05D029830 ORTHO05D010439 2.3e-12 75.5 78 55.1
CSS0005375 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 8.7e-12 73.6 92 51.1
CSS0010853 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 8.7e-12 73.6 92 51.1
CSS0012144 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 8.7e-12 73.6 92 51.1
Prupe.7G238200 Prunus persica HOM05D009305 ORTHO05D010439 8.7e-12 73.6 87 51.7
FAN26G0439 Fragaria x ananassa HOM05D009305 ORTHO05D010439 3.3e-11 71.6 87 48.3
CSS0003493 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 4.3e-11 71.2 92 48.9
Ciclev10010147m.g Citrus clementina HOM05D003010 ORTHO05D010439 4.3e-11 71.2 86 51.2
Aqoxy7G02055 Aquilegia oxysepala HOM05D003010 ORTHO05D003623 9.6e-11 70.1 83 44.6
TAR629G3508 Trochodendron aralioides HOM05D003010 ORTHO05D003623 1.1e-09 66.6 82 46.3
THA.LOC104811040 Tarenaya hassleriana HOM05D009305 ORTHO05D010439 2.4e-09 65.5 80 50.0
Lsat_1_v5_gn_5_97941 Lactuca sativa HOM05D003010 ORTHO05D003623 3.1e-09 65.1 76 47.4
CDE01G0248 Ceratophyllum demersum HOM05D003010 ORTHO05D003623 4.0e-09 64.7 86 44.2
Lj4g0006068 Lotus japonicus HOM05D003010 ORTHO05D010439 4.0e-09 64.7 88 44.3
Lj4g0025656 Lotus japonicus HOM05D003010 ORTHO05D010439 4.0e-09 64.7 88 44.3
AL6G31590 Arabidopsis lyrata HOM05D009305 ORTHO05D010439 5.3e-09 64.3 86 44.2
Atru.chr1.925 Acer truncatum HOM05D003010 ORTHO05D003623 6.9e-09 63.9 84 44.0
COL.COLO4_35181 Corchorus olitorius HOM05D018231 ORTHO05D010439 9.0e-09 63.5 87 44.8
FAN19G2542 Fragaria x ananassa HOM05D009305 ORTHO05D010439 9.0e-09 63.5 89 47.2
GSVIVG01013867001 Vitis vinifera HOM05D003010 ORTHO05D003623 9.0e-09 63.5 81 40.7
A03p09790 Brassica napus HOM05D009305 ORTHO05D010439 1.5e-08 62.8 84 45.2
CSS0046948 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 1.5e-08 62.8 96 45.8
C03p11370 Brassica napus HOM05D009305 ORTHO05D010439 2.0e-08 62.4 84 45.2
Lj8C48T14 Lonicera japonica HOM05D003010 ORTHO05D003623 2.0e-08 62.4 85 47.1
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 2.0e-08 62.4 82 45.1
AT5G20045 Arabidopsis thaliana HOM05D009305 ORTHO05D010439 2.6e-08 62.0 84 42.9
BcaB01g04814 Brassica carinata HOM05D009305 ORTHO05D010439 2.6e-08 62.0 84 45.2
Cc02_g04820 Coffea canephora HOM05D003010 ORTHO05D003623 2.6e-08 62.0 84 45.2
TAR636G0256 Trochodendron aralioides HOM05D003010 ORTHO05D003623 2.6e-08 62.0 85 43.5
ECA234G2671 Erigeron canadensis HOM05D003010 ORTHO05D010439 3.4e-08 61.6 81 43.2
Glyma.17G117900 Glycine max HOM05D003010 ORTHO05D010439 3.4e-08 61.6 85 42.4
HanXRQChr10g0316761 Helianthus annuus HOM05D003010 ORTHO05D003623 3.4e-08 61.6 77 48.1
Lalb_Chr13g0302051 Lupinus albus HOM05D009305 ORTHO05D010439 3.4e-08 61.6 85 48.2
A02p05990 Brassica napus HOM05D009305 ORTHO05D010439 4.4e-08 61.2 84 44.0
BraA02t05551Z Brassica rapa HOM05D009305 ORTHO05D010439 4.4e-08 61.2 84 44.0
CARHR192790 Cardamine hirsuta HOM05D009305 ORTHO05D010439 4.4e-08 61.2 84 44.0
Cc06_g08930 Coffea canephora HOM05D018231 ORTHO05D010439 4.4e-08 61.2 84 47.6
BolC3t13610H Brassica oleracea HOM05D009305 ORTHO05D010439 5.8e-08 60.8 84 44.0
Sc18g0000820 Simmondsia chinensis HOM05D003010 ORTHO05D010439 5.8e-08 60.8 90 38.9
BcaB05g22883 Brassica carinata HOM05D009305 ORTHO05D010439 9.9e-08 60.1 84 44.0
BcaC03g13728 Brassica carinata HOM05D009305 ORTHO05D010439 9.9e-08 60.1 84 42.9
BolC2t07005H Brassica oleracea HOM05D009305 ORTHO05D010439 9.9e-08 60.1 84 42.9
BraA03t10294Z Brassica rapa HOM05D009305 ORTHO05D010439 9.9e-08 60.1 84 44.0
PSO782G2859 Papaver somniferum HOM05D003010 ORTHO05D003623 1.7e-07 59.3 80 41.2
Gohir.A08G165900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 2.2e-07 58.9 85 40.0
Medtr1g090200 Medicago truncatula HOM05D003010 ORTHO05D003623 2.2e-07 58.9 81 43.2
CAN.G761.23 Capsicum annuum HOM05D003010 ORTHO05D003623 2.9e-07 58.5 83 44.6
COL.COLO4_21678 Corchorus olitorius HOM05D003010 ORTHO05D003623 2.9e-07 58.5 82 42.7
Duzib205G1418 Durio zibethinus HOM05D003010 ORTHO05D003623 2.9e-07 58.5 85 41.2
Gohir.A08G239500 Gossypium hirsutum HOM05D029830 ORTHO05D010439 2.9e-07 58.5 76 46.1
PSO339G5114 Papaver somniferum HOM05D003010 ORTHO05D010439 2.9e-07 58.5 91 41.8
PSO801G0586 Papaver somniferum HOM05D003010 ORTHO05D003623 2.9e-07 58.5 91 41.8
Hund14501 Selenicereus undatus HOM05D003010 ORTHO05D003623 2.9e-07 58.5 83 44.6
Gorai.004G194100 Gossypium raimondii HOM05D003010 ORTHO05D003623 3.8e-07 58.2 85 40.0
Gorai.004G278100 Gossypium raimondii HOM05D029830 ORTHO05D010439 3.8e-07 58.2 76 46.1
QL09p027705 Quercus lobata HOM05D003010 ORTHO05D003623 3.8e-07 58.2 85 41.2
Nn6g33810 Nelumbo nucifera HOM05D003010 ORTHO05D003623 4.9e-07 57.8 87 41.4
Sc01g0008150 Simmondsia chinensis HOM05D003010 ORTHO05D003623 4.9e-07 57.8 84 44.0
PSO063G3783 Papaver somniferum HOM05D003010 ORTHO05D003623 6.4e-07 57.4 80 40.0
HanXRQChr08g0229131 Helianthus annuus HOM05D003010 ORTHO05D003623 8.4e-07 57.0 87 42.5
Nitab4.5_0000500g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 8.4e-07 57.0 81 46.9
TWI81G0439 Tripterygium wilfordii HOM05D003010 ORTHO05D003623 8.4e-07 57.0 80 41.2
Haze_22213 Corylus avellana HOM05D000255 ORTHO05D000935 1.1e-06 56.6 51 52.9
Glyma.10G193700 Glycine max HOM05D003010 ORTHO05D003623 1.1e-06 56.6 83 38.6
SalBow3G0012 Salvia bowleyana HOM05D003010 ORTHO05D003623 1.1e-06 56.6 86 39.5
SalBow3G1605 Salvia bowleyana HOM05D003010 ORTHO05D003623 1.1e-06 56.6 86 39.5
Migut.D02016 Erythranthe guttata HOM05D003010 ORTHO05D010439 1.4e-06 56.2 93 40.9
Glyma.20G196700 Glycine max HOM05D003010 ORTHO05D003623 1.4e-06 56.2 83 38.6
Phvul.003G161400 Phaseolus vulgaris HOM05D009305 ORTHO05D010439 1.4e-06 56.2 81 40.7
Thecc.03G147400 Theobroma cacao HOM05D003010 ORTHO05D003623 1.4e-06 56.2 82 36.6
Thecc.03G243800 Theobroma cacao HOM05D003010 ORTHO05D003623 1.4e-06 56.2 85 38.8
BraA08t33266Z Brassica rapa HOM05D003010 ORTHO05D003623 1.9e-06 55.8 87 41.4
Cfa013595 Carpinus fangiana HOM05D000255 ORTHO05D000935 1.9e-06 55.8 51 51.0
Nitab4.5_0009955g0020 Nicotiana tabacum HOM05D003010 ORTHO05D003623 1.9e-06 55.8 81 45.7
PGR042G0596 Punica granatum HOM05D003010 ORTHO05D003623 1.9e-06 55.8 56 50.0
BcaC07g38027 Brassica carinata HOM05D001429 ORTHO05D001420 2.4e-06 55.5 87 41.4
A08p12780 Brassica napus HOM05D003010 ORTHO05D003623 2.4e-06 55.5 87 41.4
arahy.Tifrunner.gnm1.ann1.0EDZ2A Arachis hypogaea HOM05D009305 ORTHO05D010439 3.2e-06 55.1 88 36.4
Gohir.D08G184800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 3.2e-06 55.1 85 38.8
SGA_v2.0_scaffold90G27813 Striga asiatica HOM05D009305 ORTHO05D010439 3.2e-06 55.1 86 43.0
GSVIVG01007344001 Vitis vinifera HOM05D003010 ORTHO05D003623 3.2e-06 55.1 83 39.8
CANSAT56G3417 Cannabis sativa HOM05D003010 ORTHO05D003623 4.2e-06 54.7 81 40.7
Duzib205G1260 Durio zibethinus HOM05D003010 ORTHO05D003623 4.2e-06 54.7 83 43.4
Migut.F01206 Erythranthe guttata HOM05D003010 ORTHO05D003623 4.2e-06 54.7 85 35.3
Nn1g00825 Nelumbo nucifera HOM05D003010 ORTHO05D003623 4.2e-06 54.7 89 39.3
Sc07g0009120 Simmondsia chinensis HOM05D003010 ORTHO05D003623 5.4e-06 54.3 88 42.0
Dinv28854 Davidia involucrata HOM05D003010 ORTHO05D003623 7.1e-06 53.9 84 44.0
Thhalv10026660m.g Eutrema salsugineum HOM05D003010 ORTHO05D003623 7.1e-06 53.9 89 41.6
Nitab4.5_0002211g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 7.1e-06 53.9 90 40.0
Nitab4.5_0002236g0070 Nicotiana tabacum HOM05D003010 ORTHO05D003623 7.1e-06 53.9 90 40.0
Dinv16875 Davidia involucrata HOM05D003010 ORTHO05D003623 9.3e-06 53.5 88 38.6
Thhalv10015177m.g Eutrema salsugineum HOM05D009305 ORTHO05D010439 9.3e-06 53.5 84 39.3
Gohir.D09G249800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 9.3e-06 53.5 82 40.2
Gorai.006G274200 Gossypium raimondii HOM05D003010 ORTHO05D003623 9.3e-06 53.5 82 40.2
Manes.02G043601 Manihot esculenta HOM05D003010 ORTHO05D003623 9.3e-06 53.5 52 50.0
Sopen08g026560 Solanum pennellii HOM05D003010 ORTHO05D003623 9.3e-06 53.5 83 38.6
SGA_v2.0_scaffold60G20833 Striga asiatica HOM05D003010 ORTHO05D003623 9.3e-06 53.5 84 41.7
VMungo0720G1826 Vigna mungo HOM05D002495 ORTHO05D003623 9.3e-06 53.5 83 42.2


User provided reference genes

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