Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G101400 Manihot esculenta HOM05D006712 ORTHO05D008219 6.3e-208 727.2 380 100.0
Potri.001G216500 Populus trichocarpa HOM05D006712 ORTHO05D008219 1.8e-117 426.8 381 65.1
Thecc.09G272000 Theobroma cacao HOM05D006712 ORTHO05D008219 6.7e-109 398.3 365 62.2
Duzib168G2384 Durio zibethinus HOM05D006712 ORTHO05D008219 9.1e-106 387.9 376 58.8
CiPaw.13G129200 Carya illinoinensis HOM05D006712 ORTHO05D008219 2.6e-105 386.3 364 59.9
Gohir.A09G099400 Gossypium hirsutum HOM05D006712 ORTHO05D008219 5.9e-105 385.2 364 60.4
Gorai.006G115800 Gossypium raimondii HOM05D006712 ORTHO05D008219 8.5e-104 381.3 380 58.9
COL.COLO4_25432 Corchorus olitorius HOM05D006712 ORTHO05D008219 1.9e-103 380.2 366 60.7
Atru.chr3.3110 Acer truncatum HOM05D006712 ORTHO05D008219 7.2e-103 378.3 385 58.2
TWI31G0890 Tripterygium wilfordii HOM05D006712 ORTHO05D008219 6.1e-102 375.2 378 58.2
Cfa010172 Carpinus fangiana HOM05D006712 ORTHO05D008219 4.4e-100 369.0 367 58.0
FAN16G2749 Fragaria x ananassa HOM05D006712 ORTHO05D008219 9.7e-100 367.9 372 55.9
Ciclev10028702m.g Citrus clementina HOM05D006712 ORTHO05D008219 1.3e-99 367.5 383 57.4
FAN11G0164 Fragaria x ananassa HOM05D006712 ORTHO05D008219 6.3e-99 365.2 372 55.9
RcHm_v2.0_Chr5g0048501 Rosa chinensis HOM05D006712 ORTHO05D008219 2.4e-98 363.2 373 56.6
CSS0013127 Camellia sinensis var. sinensis HOM05D006712 ORTHO05D008219 7.0e-98 361.7 368 56.8
AL6G33100 Arabidopsis lyrata HOM05D006712 ORTHO05D008219 1.5e-97 360.5 370 55.1
Sp6g23080 Schrenkiella parvula HOM05D006712 ORTHO05D008219 1.0e-96 357.8 379 54.6
Lj1A268G10 Lonicera japonica HOM05D006712 ORTHO05D008219 1.7e-96 357.1 377 56.5
Eucgr.B03815 Eucalyptus grandis HOM05D006712 ORTHO05D008219 5.0e-96 355.5 372 54.0
ClCG03G012180 Citrullus lanatus HOM05D006712 ORTHO05D008219 1.1e-95 354.4 409 52.3
Hma1.2p1_0101F.1_g049480 Hydrangea macrophylla HOM05D006712 ORTHO05D008219 1.9e-95 353.6 369 55.3
CARHR191410 Cardamine hirsuta HOM05D006712 ORTHO05D008219 3.2e-95 352.8 379 52.5
arahy.Tifrunner.gnm1.ann1.4CVW1F Arachis hypogaea HOM05D006712 ORTHO05D008219 2.7e-94 349.7 393 54.5
MELO3C015061.2 Cucumis melo HOM05D006712 ORTHO05D008219 2.7e-94 349.7 372 54.3
AT5G22120 Arabidopsis thaliana HOM05D006712 ORTHO05D008219 1.0e-93 347.8 371 54.4
Dinv18839 Davidia involucrata HOM05D006712 ORTHO05D008219 2.3e-93 346.7 364 56.9
CAN.G919.48 Capsicum annuum HOM05D006712 ORTHO05D008219 3.9e-93 345.9 370 54.3
CsaV3_1G043820 Cucumis sativus L. HOM05D006712 ORTHO05D008219 3.9e-93 345.9 372 54.0
Sopen06g030560 Solanum pennellii HOM05D006712 ORTHO05D008219 6.7e-93 345.1 366 54.9
Lalb_Chr19g0136261 Lupinus albus HOM05D006712 ORTHO05D008219 1.1e-92 344.4 388 54.4
Carub.0006s1976 Capsella rubella HOM05D006712 ORTHO05D008219 3.3e-92 342.8 375 53.3
THA.LOC104810933 Tarenaya hassleriana HOM05D006712 ORTHO05D008219 7.4e-92 341.7 368 54.9
PGSC0003DMG400005929 Solanum tuberosum HOM05D006712 ORTHO05D008219 8.2e-91 338.2 372 54.0
Nitab4.5_0008897g0020 Nicotiana tabacum HOM05D006712 ORTHO05D008219 2.4e-90 336.7 372 53.8
Aa31LG1G13310 Aethionema arabicum HOM05D006712 ORTHO05D008219 7.0e-90 335.1 383 50.1
Hund20948 Selenicereus undatus HOM05D006712 ORTHO05D008219 9.1e-90 334.7 386 51.6
MSTRG.17680 Avicennia marina HOM05D006712 ORTHO05D008219 2.6e-89 333.2 381 52.2
Lalb_Chr03g0028431 Lupinus albus HOM05D006712 ORTHO05D008219 2.6e-89 333.2 370 54.1
Rhsim13G0196500 Rhododendron simsii HOM05D006712 ORTHO05D008219 1.0e-88 331.3 462 46.5
Glyma.11G178255 Glycine max HOM05D006712 ORTHO05D008219 1.3e-88 330.9 382 53.7
Glyma.12G094900 Glycine max HOM05D006712 ORTHO05D008219 2.2e-88 330.1 370 54.9
TAR623G0680 Trochodendron aralioides HOM05D006712 ORTHO05D008219 3.8e-88 329.3 367 53.4
C03p12200 Brassica napus HOM05D006712 ORTHO05D008219 5.0e-88 328.9 384 51.6
BolC3t13693H Brassica oleracea HOM05D006712 ORTHO05D008219 1.1e-87 327.8 384 51.3
BcaC01g06601 Brassica carinata HOM05D006712 ORTHO05D008219 2.5e-87 326.6 378 51.1
AUR62020228 Chenopodium quinoa HOM05D006712 ORTHO05D008219 2.5e-87 326.6 373 52.3
BcaB01g04741 Brassica carinata HOM05D006712 ORTHO05D008219 5.5e-87 325.5 384 50.8
A03p10600 Brassica napus HOM05D006712 ORTHO05D008219 1.6e-86 323.9 385 51.2
VMungo1127G0962 Vigna mungo HOM05D006712 ORTHO05D008219 3.6e-86 322.8 384 53.4
BraA03t10372Z Brassica rapa HOM05D006712 ORTHO05D008219 6.1e-86 322.0 386 51.0
AUR62001554 Chenopodium quinoa HOM05D006712 ORTHO05D008219 1.0e-85 321.2 373 52.3
Gohir.D09G098800 Gossypium hirsutum HOM05D006712 ORTHO05D008219 1.4e-85 320.9 277 62.5
arahy.Tifrunner.gnm1.ann1.UJS8TC Arachis hypogaea HOM05D006712 ORTHO05D008219 6.7e-85 318.5 395 51.4
Phvul.011G099200 Phaseolus vulgaris HOM05D006712 ORTHO05D008219 2.0e-84 317.0 368 52.7
Aqoxy1G00652 Aquilegia oxysepala HOM05D006712 ORTHO05D008219 3.3e-84 316.2 367 52.3
Nitab4.5_0000380g0060 Nicotiana tabacum HOM05D006712 ORTHO05D008219 7.5e-84 315.1 405 49.6
SalBow3G4582 Salvia bowleyana HOM05D006712 ORTHO05D008219 7.5e-84 315.1 377 52.0
Sed0013977 Sechium edule HOM05D006712 ORTHO05D008219 7.5e-84 315.1 369 52.8
Sc21g0006790 Simmondsia chinensis HOM05D006712 ORTHO05D008219 2.8e-83 313.2 364 50.5
Cc01_g07690 Coffea canephora HOM05D006712 ORTHO05D008219 3.7e-83 312.8 377 51.7
DCAR_014052 Daucus carota HOM05D006712 ORTHO05D008219 4.8e-83 312.4 368 51.1
EL10Ac7g16293 Beta vulgaris HOM05D006712 ORTHO05D008219 8.2e-83 311.6 407 48.9
PSO384G4991 Papaver somniferum HOM05D006712 ORTHO05D008219 2.4e-82 310.1 380 51.1
Lj3g0027754 Lotus japonicus HOM05D006712 ORTHO05D008219 3.1e-82 309.7 392 50.8
GSVIVG01037582001 Vitis vinifera HOM05D006712 ORTHO05D008219 7.0e-82 308.5 249 63.5
Peaxi162Scf00098g00079 Petunia axillaris HOM05D006712 ORTHO05D008219 1.2e-81 307.8 362 49.7
PSO339G1919 Papaver somniferum HOM05D006712 ORTHO05D008219 3.8e-80 302.8 380 51.3
Oeu009041.1 Olea europaea HOM05D006712 ORTHO05D008219 2.7e-78 296.6 395 48.4
Sabra16G0127200 Salix brachista HOM05D006712 ORTHO05D008219 1.4e-77 294.3 278 60.4
GSVIVG01024643001 Vitis vinifera HOM05D006712 ORTHO05D008219 1.5e-76 290.8 249 61.8
Cpa.g.sc103.11 Carica papaya HOM05D006712 ORTHO05D008219 9.8e-76 288.1 329 53.8
Ca_19473_v3 Cicer arietinum L. HOM05D006712 ORTHO05D008219 2.3e-72 276.9 375 48.0
MD14G1087800 Malus domestica HOM05D006712 ORTHO05D008219 2.8e-70 270.0 232 61.6
Thhalv10013868m.g Eutrema salsugineum HOM05D006712 ORTHO05D008219 3.0e-69 266.5 344 46.2
FvH4_3g26410 Fragaria vesca HOM05D006712 ORTHO05D008219 3.0e-69 266.5 367 46.6
Actinidia24254 Actinidia chinensis HOM05D006712 ORTHO05D008219 4.0e-69 266.2 365 48.8
Migut.N02451 Erythranthe guttata HOM05D006712 ORTHO05D008219 2.2e-67 260.4 262 53.1
vmacro03955 Vaccinium macrocarpon HOM05D006712 ORTHO05D008219 1.1e-66 258.1 468 41.2
Actinidia07277 Actinidia chinensis HOM05D006712 ORTHO05D008219 7.3e-63 245.4 301 51.5
ECA238G0730 Erigeron canadensis HOM05D006712 ORTHO05D008219 1.2e-60 238.0 230 53.9
Medtr4g051518 Medicago truncatula HOM05D006712 ORTHO05D008219 2.6e-60 236.9 245 51.0
BcaB08g36451 Brassica carinata HOM05D002527 ORTHO05D008219 9.8e-60 235.0 274 50.0
Lsat_1_v5_gn_2_34521 Lactuca sativa HOM05D006712 ORTHO05D008219 1.7e-59 234.2 260 51.5
MBI17_g02433_MAGBIO Magnolia biondii HOM05D006712 ORTHO05D008219 1.7e-59 234.2 414 39.6
HPP92_002650 Vanilla planifolia HOM05D006712 ORTHO05D008219 2.2e-59 233.8 377 45.1
Zm00001eb282230 Zea mays HOM05D006712 ORTHO05D008219 2.2e-59 233.8 375 43.2
unitig_27.g25124 Utricularia gibba HOM05D006712 ORTHO05D008219 4.9e-59 232.6 387 41.3
HanXRQChr04g0096771 Helianthus annuus HOM05D006712 ORTHO05D008219 3.2e-58 229.9 229 55.0
Hma1.2p1_0101F.1_g049490 Hydrangea macrophylla HOM05D006712 ORTHO05D008219 3.2e-58 229.9 229 57.6
SGA_v2.0_scaffold92G28138 Striga asiatica HOM05D006712 ORTHO05D008219 7.0e-58 228.8 346 43.6
QL01p019587 Quercus lobata HOM05D006712 ORTHO05D008219 2.0e-57 227.3 146 76.0
Haze_23559 Corylus avellana HOM05D006712 ORTHO05D008219 2.3e-56 223.8 281 49.5
Psat7g204400 Pisum sativum HOM05D006712 ORTHO05D008219 3.0e-56 223.4 245 52.7
Ah.15g099020 Amaranthus hybridus HOM05D006712 ORTHO05D008219 1.5e-52 211.1 276 49.3
CDE06G0581 Ceratophyllum demersum HOM05D006712 ORTHO05D008219 2.0e-52 210.7 389 39.3
TPR.G4637 Trifolium pratense HOM05D006712 ORTHO05D008219 2.2e-51 207.2 284 45.1
SHI25255 Sapria himalayana HOM05D000265 ORTHO05D000161 7.8e-49 198.7 342 40.1
BcaC04g19542 Brassica carinata HOM05D006712 ORTHO05D008219 1.0e-48 198.4 273 46.2
Nn6g34683 Nelumbo nucifera HOM05D006712 ORTHO05D008219 4.3e-47 193.0 389 38.3
Os01g0965600 Oryza sativa ssp. japonica HOM05D006712 ORTHO05D008219 1.1e-45 188.3 242 48.8
Prupe.7G038700 Prunus persica HOM05D006712 ORTHO05D008219 6.6e-40 169.1 234 44.9
SEGI_35195 Sequoiadendron giganteum HOM05D006712 ORTHO05D008219 1.4e-37 161.4 231 43.7
Mapoly0027s0100 Marchantia polymorpha HOM05D006712 ORTHO05D008219 2.0e-36 157.5 383 32.9
ATR0772G163 Amborella trichopoda HOM05D006712 ORTHO05D008219 1.7e-35 154.5 293 42.0
QL01p019597 Quercus lobata HOM05D006712 ORTHO05D008219 2.9e-35 153.7 212 48.1
Thecc.09G272200 Theobroma cacao HOM05D006712 ORTHO05D008219 2.9e-35 153.7 157 54.1
Pp3c7_620 Physcomitrium patens HOM05D006712 ORTHO05D008219 8.4e-35 152.1 395 32.2
BraA10t43946Z Brassica rapa HOM05D006712 ORTHO05D008219 2.3e-32 144.1 204 45.1
C09p54580 Brassica napus HOM05D006712 ORTHO05D008219 2.8e-30 137.1 144 51.4
BolC9t58325H Brassica oleracea HOM05D006712 ORTHO05D008219 2.8e-30 137.1 144 51.4
A10p18660 Brassica napus HOM05D002527 ORTHO05D002865 1.8e-29 134.4 190 44.2
SMO119G0218 Selaginella moellendorffii HOM05D006712 ORTHO05D008219 2.6e-28 130.6 333 31.5
BcaC04g19541 Brassica carinata HOM05D002527 ORTHO05D002865 8.1e-22 109.0 90 60.0
ATR0772G219 Amborella trichopoda HOM05D006712 ORTHO05D008219 3.8e-19 100.1 91 58.2
FAN21G2251 Fragaria x ananassa HOM05D006712 ORTHO05D008219 1.4e-18 98.2 64 73.4
Medtr4g051435 Medicago truncatula HOM05D000445 ORTHO05D000314 1.4e-18 98.2 111 46.8
AagrBONN_evm.TU.Sc2ySwM_117.1746 Anthoceros agrestis HOM05D006712 ORTHO05D008219 1.9e-18 97.8 205 36.1
Sabra16G0127300 Salix brachista HOM05D006712 ORTHO05D008219 7.1e-18 95.9 61 80.3
Duzib170G0178 Durio zibethinus HOM05D006712 ORTHO05D008219 2.8e-14 84.0 95 52.6
CBR_g40336 Chara braunii HOM05D006712 ORTHO05D008219 7.6e-12 75.9 224 29.0
C09p54560 Brassica napus HOM05D000021 ORTHO05D000010 1.3e-11 75.1 68 60.3
BolC9t58324H Brassica oleracea HOM05D000021 ORTHO05D000010 1.7e-11 74.7 68 60.3
CDE07G1644 Ceratophyllum demersum HOM05D006712 ORTHO05D008219 4.2e-10 70.1 60 60.0
BcaC01g06603 Brassica carinata HOM05D006712 ORTHO05D008219 3.5e-09 67.0 71 52.1
BcaC04g19543 Brassica carinata HOM05D006712 ORTHO05D008219 5.7e-07 59.7 37 70.3
Cre08.g362850 Chlamydomonas reinhardtii HOM05D006712 ORTHO05D008219 1.6e-06 58.2 144 27.1


User provided reference genes

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