Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G100600 Manihot esculenta HOM05D006255 ORTHO05D008014 8.2e-102 374.0 230 100.0
Ciclev10029213m.g Citrus clementina HOM05D006255 ORTHO05D008014 2.0e-84 316.2 230 83.5
vmacro02304 Vaccinium macrocarpon HOM05D006255 ORTHO05D008014 1.7e-83 313.2 227 81.5
Lj9A402T69 Lonicera japonica HOM05D006255 ORTHO05D008014 1.1e-82 310.5 227 81.9
TWI31G0945 Tripterygium wilfordii HOM05D006255 ORTHO05D008014 4.2e-82 308.5 230 83.0
Sed0016506 Sechium edule HOM05D006255 ORTHO05D008014 1.2e-81 307.0 227 71.4
Duzib248G1128 Durio zibethinus HOM05D006255 ORTHO05D008014 2.3e-80 302.8 230 79.6
Nn5g30887 Nelumbo nucifera HOM05D006255 ORTHO05D008014 2.3e-80 302.8 230 77.8
Eucgr.I01476 Eucalyptus grandis HOM05D006255 ORTHO05D008014 3.0e-80 302.4 227 79.3
CsaV3_7G001410 Cucumis sativus L. HOM05D006255 ORTHO05D008014 5.2e-80 301.6 227 77.5
CSS0039919 Camellia sinensis var. sinensis HOM05D006255 ORTHO05D008014 8.8e-80 300.8 230 77.0
MELO3C013309.2 Cucumis melo HOM05D006255 ORTHO05D008014 2.0e-79 299.7 227 80.6
Gohir.A12G035500 Gossypium hirsutum HOM05D006255 ORTHO05D008014 5.7e-79 298.1 230 80.4
TAR625G0439 Trochodendron aralioides HOM05D006255 ORTHO05D008014 1.7e-78 296.6 230 74.3
Atru.chr5.3479 Acer truncatum HOM05D006255 ORTHO05D008014 2.8e-78 295.8 230 79.1
PGR142G2886 Punica granatum HOM05D006255 ORTHO05D008014 8.2e-78 294.3 230 77.4
arahy.Tifrunner.gnm1.ann1.K7U5ID Arachis hypogaea HOM05D006255 ORTHO05D008014 1.8e-77 293.1 231 77.5
arahy.Tifrunner.gnm1.ann1.5E63QU Arachis hypogaea HOM05D006255 ORTHO05D008014 3.1e-77 292.4 231 77.5
THA.LOC104804084 Tarenaya hassleriana HOM05D006255 ORTHO05D008014 2.0e-76 289.7 230 76.5
ClCG02G003730 Citrullus lanatus HOM05D006255 ORTHO05D008014 7.7e-76 287.7 229 74.2
Gohir.D01G162900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 2.9e-75 285.8 230 77.0
Gorai.002G202100 Gossypium raimondii HOM05D006255 ORTHO05D008014 2.9e-75 285.8 230 77.0
Actinidia20544 Actinidia chinensis HOM05D006255 ORTHO05D008014 3.8e-75 285.4 227 74.9
MBI05_g35101_MAGBIO Magnolia biondii HOM05D006255 ORTHO05D008014 1.9e-74 283.1 226 75.2
Potri.009G140200 Populus trichocarpa HOM05D006255 ORTHO05D008014 2.5e-74 282.7 230 78.7
Sed0013069 Sechium edule HOM05D006255 ORTHO05D008014 7.2e-74 281.2 227 69.6
MSTRG.19958 Avicennia marina HOM05D006255 ORTHO05D008014 3.6e-73 278.9 227 76.2
ATR0661G177 Amborella trichopoda HOM05D006255 ORTHO05D008014 1.0e-72 277.3 226 78.3
Aqoxy5G01073 Aquilegia oxysepala HOM05D006255 ORTHO05D008014 1.0e-72 277.3 231 77.1
Prupe.8G172600 Prunus persica HOM05D006255 ORTHO05D008014 2.3e-72 276.2 230 75.7
MSTRG.16938 Avicennia marina HOM05D006255 ORTHO05D008014 8.8e-72 274.2 227 75.3
Thecc.02G052300 Theobroma cacao HOM05D006255 ORTHO05D008014 8.8e-72 274.2 230 75.7
Hma1.2p1_0163F.1_g072870 Hydrangea macrophylla HOM05D006255 ORTHO05D008014 9.8e-71 270.8 228 75.0
Gohir.D12G037200 Gossypium hirsutum HOM05D006255 ORTHO05D008014 3.7e-70 268.9 230 75.2
Nitab4.5_0003603g0130 Nicotiana tabacum HOM05D006255 ORTHO05D008014 2.4e-69 266.2 225 75.6
Gorai.008G038300 Gossypium raimondii HOM05D006255 ORTHO05D008014 7.0e-69 264.6 230 74.8
COL.COLO4_18000 Corchorus olitorius HOM05D006255 ORTHO05D008014 1.6e-68 263.5 226 73.9
PGSC0003DMG401018633 Solanum tuberosum HOM05D006255 ORTHO05D008014 2.7e-68 262.7 223 71.7
ECA233G3172 Erigeron canadensis HOM05D006255 ORTHO05D008014 4.5e-68 261.9 228 71.9
Cc09_g10450 Coffea canephora HOM05D006255 ORTHO05D008014 1.3e-67 260.4 223 70.0
Cfa005320 Carpinus fangiana HOM05D006255 ORTHO05D010524 1.7e-67 260.0 222 77.5
Oeu029013.1 Olea europaea HOM05D006255 ORTHO05D008014 1.7e-67 260.0 226 72.6
Solyc01g111940.4 Solanum lycopersicum HOM05D006255 ORTHO05D008014 1.7e-67 260.0 227 70.0
Actinidia18024 Actinidia chinensis HOM05D006255 ORTHO05D008014 2.3e-67 259.6 227 70.5
CANSAT25G2216 Cannabis sativa HOM05D006255 ORTHO05D008014 3.8e-67 258.8 230 74.8
Sopen01g053990 Solanum pennellii HOM05D006255 ORTHO05D008014 3.8e-67 258.8 227 69.6
Dinv14143 Davidia involucrata HOM05D006255 ORTHO05D008014 6.6e-67 258.1 230 73.0
Nitab4.5_0001506g0010 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.5e-66 256.9 226 73.0
Medtr3g118350 Medicago truncatula HOM05D006255 ORTHO05D008014 1.9e-66 256.5 227 71.8
Phvul.009G117000 Phaseolus vulgaris HOM05D006255 ORTHO05D008014 1.9e-66 256.5 230 73.0
Nn6g31846 Nelumbo nucifera HOM05D006255 ORTHO05D008014 2.5e-66 256.1 230 72.2
Cpa.g.sc20.136 Carica papaya HOM05D006255 ORTHO05D008014 7.2e-66 254.6 227 69.6
Nitab4.5_0001215g0050 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.4e-64 250.4 227 72.7
Carub.0001s1596 Capsella rubella HOM05D006255 ORTHO05D008014 1.8e-64 250.0 226 69.0
Peaxi162Scf00362g00349 Petunia axillaris HOM05D006255 ORTHO05D008014 2.3e-64 249.6 227 72.2
HanXRQChr16g0527781 Helianthus annuus HOM05D006255 ORTHO05D008014 4.0e-64 248.8 229 69.4
Lsat_1_v5_gn_8_122201 Lactuca sativa HOM05D006255 ORTHO05D008014 4.0e-64 248.8 225 70.7
Aa31LG7G15760 Aethionema arabicum HOM05D007460 ORTHO05D009396 5.2e-64 248.4 245 66.1
SGA_v2.0_scaffold32G13327 Striga asiatica HOM05D006255 ORTHO05D008014 8.9e-64 247.7 227 71.4
Nitab4.5_0001629g0040 Nicotiana tabacum HOM05D006255 ORTHO05D008014 2.6e-63 246.1 227 71.4
Glyma.06G001200 Glycine max HOM05D006255 ORTHO05D008014 5.7e-63 245.0 230 71.3
Os04g0561600 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 7.5e-63 244.6 235 67.2
Sabra09G0108900 Salix brachista HOM05D006255 ORTHO05D008014 1.7e-62 243.4 259 66.0
CiPaw.05G087400 Carya illinoinensis HOM05D006255 ORTHO05D008014 4.9e-62 241.9 230 71.7
Aa31LG9G40 Aethionema arabicum HOM05D006255 ORTHO05D008014 8.3e-62 241.1 249 63.1
CDE02G2216 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 4.1e-61 238.8 230 68.7
AL1G28330 Arabidopsis lyrata HOM05D006255 ORTHO05D008014 9.2e-61 237.7 226 66.4
MD10G1131800 Malus domestica HOM05D006255 ORTHO05D008014 9.2e-61 237.7 230 67.4
QL11p053294 Quercus lobata HOM05D006255 ORTHO05D008014 9.2e-61 237.7 228 71.9
SalBow1G8078 Salvia bowleyana HOM05D006255 ORTHO05D010524 9.2e-61 237.7 226 69.9
Lj4g0004587 Lotus japonicus HOM05D006255 ORTHO05D008014 4.5e-60 235.3 231 69.7
TPR.G38579 Trifolium pratense HOM05D006255 ORTHO05D008014 4.5e-60 235.3 227 67.4
unitig_0.g812 Utricularia gibba HOM05D006255 ORTHO05D008014 1.3e-59 233.8 223 65.9
Ah.01g007960 Amaranthus hybridus HOM05D006255 ORTHO05D008014 2.9e-59 232.6 230 67.4
EL10Ac9g21307 Beta vulgaris HOM05D006255 ORTHO05D008014 1.1e-58 230.7 228 62.3
PSO675G3819 Papaver somniferum HOM05D006255 ORTHO05D008014 2.8e-57 226.1 230 65.7
Sc08g0002620 Simmondsia chinensis HOM05D006255 ORTHO05D008014 2.8e-57 226.1 230 65.2
CBR_g61263 Chara braunii HOM05D006255 ORTHO05D008014 1.0e-56 224.2 226 60.2
Glyma.04G001700 Glycine max HOM05D006255 ORTHO05D008014 2.3e-56 223.0 230 67.0
Psat5g000920 Pisum sativum HOM05D006255 ORTHO05D008014 2.3e-56 223.0 226 65.0
HPP92_025891 Vanilla planifolia HOM05D006255 ORTHO05D008014 2.3e-56 223.0 227 59.0
BcaB03g14828 Brassica carinata HOM05D006255 ORTHO05D008014 3.1e-56 222.6 226 64.6
CARHR016680 Cardamine hirsuta HOM05D006255 ORTHO05D008014 6.8e-56 221.5 226 64.6
Gohir.A01G171900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 6.8e-56 221.5 155 74.2
Lalb_Chr08g0246771 Lupinus albus HOM05D006255 ORTHO05D008014 6.8e-56 221.5 231 66.7
MD05G1128500 Malus domestica HOM05D006255 ORTHO05D008014 6.8e-56 221.5 230 66.5
Mapoly0058s0055 Marchantia polymorpha HOM05D006255 ORTHO05D008014 6.8e-56 221.5 226 65.0
Os03g0131800 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 1.2e-55 220.7 230 67.4
Ca_15278_v3 Cicer arietinum L. HOM05D006255 ORTHO05D008014 3.4e-55 219.2 227 67.0
HPP92_022389 Vanilla planifolia HOM05D006255 ORTHO05D008014 7.5e-55 218.0 223 55.6
SMO119G0083 Selaginella moellendorffii HOM05D006255 ORTHO05D008014 1.7e-54 216.9 230 54.3
Zm00001eb074070 Zea mays HOM05D006255 ORTHO05D008014 3.7e-54 215.7 233 66.5
AT1G16210 Arabidopsis thaliana HOM05D006255 ORTHO05D008014 6.4e-54 214.9 226 61.1
FAN15G2553 Fragaria x ananassa HOM05D006255 ORTHO05D008014 8.3e-54 214.5 226 65.0
PSO541G1652 Papaver somniferum HOM05D006255 ORTHO05D008014 1.9e-53 213.4 230 63.9
Haze_02065 Corylus avellana HOM05D006255 ORTHO05D008014 5.4e-53 211.8 329 51.4
AagrBONN_evm.TU.Sc2ySwM_368.1212 Anthoceros agrestis HOM05D006255 ORTHO05D008014 6.0e-52 208.4 228 61.4
FAN27G1328 Fragaria x ananassa HOM05D006255 ORTHO05D008014 1.5e-50 203.8 228 62.7
FAN24G2083 Fragaria x ananassa HOM05D006255 ORTHO05D008014 1.9e-50 203.4 228 63.2
FvH4_2g15950 Fragaria vesca HOM05D006255 ORTHO05D008014 4.3e-50 202.2 226 63.3
RcHm_v2.0_Chr6g0279491 Rosa chinensis HOM05D006255 ORTHO05D008014 9.5e-50 201.1 226 63.3
VMungo1309G1654 Vigna mungo HOM05D006255 ORTHO05D008014 1.2e-49 200.7 230 63.9
C06p44610 Brassica napus HOM05D002002 ORTHO05D008711 1.1e-48 197.6 226 61.9
BolC6t39525H Brassica oleracea HOM05D006255 ORTHO05D008014 1.1e-48 197.6 226 61.9
Duzib132G0230 Durio zibethinus HOM05D006255 ORTHO05D008014 2.3e-48 196.4 230 63.9
Pp3c11_730 Physcomitrium patens HOM05D006255 ORTHO05D008014 3.4e-47 192.6 228 55.7
A07p37050 Brassica napus HOM05D002002 ORTHO05D008711 4.4e-47 192.2 226 61.5
Pp3c11_731 Physcomitrium patens HOM05D006255 ORTHO05D008014 5.8e-47 191.8 228 55.7
BraA07t31267Z Brassica rapa HOM05D006255 ORTHO05D008014 9.8e-47 191.0 226 61.1
BcaB03g14827 Brassica carinata HOM05D002002 ORTHO05D008711 2.9e-46 189.5 226 61.1
AUR62009986 Chenopodium quinoa HOM05D006255 ORTHO05D008014 5.4e-45 185.3 226 58.8
Pp3c7_26990 Physcomitrium patens HOM05D006255 ORTHO05D008014 7.0e-45 184.9 228 48.7
Sp4g00050 Schrenkiella parvula HOM05D006255 ORTHO05D008014 6.0e-44 181.8 229 58.1
Ah.01g023450 Amaranthus hybridus HOM05D000939 ORTHO05D000745 7.8e-44 181.4 211 63.5
Lj5C174T15 Lonicera japonica HOM05D006255 ORTHO05D008014 2.3e-43 179.9 226 61.9
CAN.G1235.32 Capsicum annuum HOM05D006255 ORTHO05D008014 1.2e-41 174.1 188 63.3
CDE09G0466 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 3.5e-36 156.0 96 76.0
Gohir.A03G206650 Gossypium hirsutum HOM05D006255 ORTHO05D008014 6.8e-32 141.7 231 45.0
Gorai.005G255900 Gossypium raimondii HOM05D006255 ORTHO05D008014 7.1e-29 131.7 231 42.4
AUR62012975 Chenopodium quinoa HOM05D006255 ORTHO05D008014 9.2e-29 131.3 226 48.2
GSVIVG01023898001 Vitis vinifera HOM05D006255 ORTHO05D008014 3.5e-28 129.4 66 90.9
Peaxi162Scf00875g00037 Petunia axillaris HOM05D006255 ORTHO05D008014 1.1e-24 117.9 95 63.2
C06p36040 Brassica napus HOM05D006255 ORTHO05D008014 3.1e-24 116.3 105 61.0
BolC6t38725H Brassica oleracea HOM05D006255 ORTHO05D008014 5.8e-23 112.1 68 76.5
PRCOL_00005063 Prasinoderma coloniale HOM05D006255 ORTHO05D008014 8.4e-22 108.2 233 37.3
Migut.H01073 Erythranthe guttata HOM05D006255 ORTHO05D008014 1.9e-21 107.1 226 46.5
Cre14.g629500 Chlamydomonas reinhardtii HOM05D006255 ORTHO05D008014 7.1e-21 105.1 222 38.3
MCO11G585 Micromonas commoda HOM05D006255 ORTHO05D008014 3.0e-11 73.2 157 37.6
BcaC08g45811 Brassica carinata HOM05D006255 ORTHO05D008014 7.4e-10 68.6 40 77.5
PSO541G1702 Papaver somniferum HOM05D006255 ORTHO05D008014 1.8e-08 63.9 175 40.0
Cfa024524 Carpinus fangiana HOM05D006255 ORTHO05D008014 2.9e-06 56.6 78 39.7


User provided reference genes

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