Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 4.4e-136 488.0 262 100.0
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 1.9e-126 456.1 262 93.5
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 1.1e-123 446.8 262 90.1
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 1.1e-121 440.3 262 89.3
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 2.4e-121 439.1 262 88.2
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 2.4e-121 439.1 262 88.9
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 3.1e-121 438.7 262 88.5
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.1e-121 438.7 262 88.2
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 3.1e-121 438.7 262 88.2
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 6.9e-121 437.6 262 87.8
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 6.9e-121 437.6 262 88.5
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 6.9e-121 437.6 262 88.5
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 6.9e-121 437.6 262 88.5
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 9.0e-121 437.2 262 87.8
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 9.0e-121 437.2 262 88.2
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 9.0e-121 437.2 262 88.2
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 9.0e-121 437.2 262 87.8
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 2.6e-120 435.6 262 87.8
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 2.6e-120 435.6 262 87.8
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 2.9e-119 432.2 262 86.6
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 2.9e-119 432.2 262 87.4
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 3.8e-119 431.8 262 86.6
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 1.1e-118 430.3 262 87.0
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.4e-118 429.9 262 86.6
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 2.4e-118 429.1 262 86.3
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 2.4e-118 429.1 262 84.4
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 2.4e-118 429.1 262 86.3
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 2.4e-118 429.1 262 86.6
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 4.2e-118 428.3 262 85.5
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 5.4e-118 427.9 262 86.6
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 1.2e-117 426.8 262 84.7
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 1.6e-117 426.4 262 84.7
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 1.6e-117 426.4 262 85.9
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 2.1e-117 426.0 262 85.1
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.1e-117 426.0 262 84.4
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 2.1e-117 426.0 262 85.1
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 3.5e-117 425.2 262 84.4
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 4.6e-117 424.9 259 87.6
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 4.6e-117 424.9 262 85.1
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 4.6e-117 424.9 262 84.4
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 6.0e-117 424.5 262 85.5
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 6.0e-117 424.5 261 83.9
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.0e-116 423.7 262 85.9
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 1.0e-116 423.7 262 84.7
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 84.4
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 85.9
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 84.4
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 85.5
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 85.5
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 83.6
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 3.0e-116 422.2 262 86.6
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 3.9e-116 421.8 263 85.9
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 5.1e-116 421.4 263 85.9
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 6.7e-116 421.0 262 83.2
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 6.7e-116 421.0 262 85.1
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 8.7e-116 420.6 262 85.5
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 84.4
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 2.5e-115 419.1 262 82.8
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 3.3e-115 418.7 262 84.7
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 3.3e-115 418.7 262 84.0
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 7.4e-115 417.5 263 85.2
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 7.4e-115 417.5 262 84.7
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 7.4e-115 417.5 262 84.7
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 9.6e-115 417.2 262 84.0
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 9.6e-115 417.2 262 83.6
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.3e-114 416.8 262 84.0
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 1.6e-114 416.4 262 85.5
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 1.6e-114 416.4 262 83.6
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 1.6e-114 416.4 262 84.0
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 2.1e-114 416.0 262 83.2
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 2.1e-114 416.0 262 83.6
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 2.1e-114 416.0 262 83.2
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 2.8e-114 415.6 263 84.8
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 3.7e-114 415.2 262 82.8
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 4.8e-114 414.8 262 83.6
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 4.8e-114 414.8 262 83.6
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 8.1e-114 414.1 262 83.2
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 8.1e-114 414.1 262 83.2
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 1.4e-113 413.3 262 83.6
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 3.1e-113 412.1 262 83.2
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 9.0e-113 410.6 262 82.1
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 9.0e-113 410.6 262 84.0
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 1.2e-112 410.2 262 82.1
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 1.5e-112 409.8 263 83.7
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 9.9e-112 407.1 262 84.0
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.7e-111 406.4 250 84.4
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 1.7e-111 406.4 262 84.0
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 1.7e-111 406.4 262 81.7
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 2.5e-110 402.5 239 88.7
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.2e-109 400.2 264 79.9
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 1.6e-109 399.8 262 81.3
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 1.6e-109 399.8 264 81.1
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 2.7e-109 399.1 262 80.2
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 2.7e-109 399.1 247 87.0
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 6.0e-109 397.9 247 86.2
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 1.3e-108 396.7 262 78.2
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 2.3e-108 396.0 264 80.7
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 3.0e-108 395.6 263 82.5
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 8.7e-108 394.0 263 82.1
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 1.5e-107 393.3 263 78.7
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 2.5e-107 392.5 239 87.9
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 3.7e-106 388.7 262 79.0
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 1.8e-105 386.3 262 77.5
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 3.1e-105 385.6 263 80.6
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 5.3e-105 384.8 263 81.7
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 1.2e-104 383.6 262 76.7
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 1.2e-104 383.6 262 76.7
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 1.2e-104 383.6 262 76.7
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 1.2e-104 383.6 262 76.7
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 1.5e-104 383.3 263 81.4
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 2.0e-104 382.9 262 76.7
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 2.0e-104 382.9 262 76.7
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 2.0e-104 382.9 262 77.1
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 3.4e-104 382.1 262 76.7
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 3.4e-104 382.1 262 76.3
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 3.4e-104 382.1 262 76.3
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 5.8e-104 381.3 262 76.7
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 7.6e-104 380.9 262 76.0
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 1.0e-103 380.6 262 76.3
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 1.3e-103 380.2 262 76.0
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 1.3e-103 380.2 262 76.3
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 1.3e-103 380.2 262 76.3
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 1.7e-103 379.8 263 79.1
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 3.8e-103 378.6 262 76.0
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 3.8e-103 378.6 248 82.3
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 8.4e-103 377.5 263 76.0
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 8.4e-103 377.5 263 76.0
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 8.4e-103 377.5 263 76.0
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 9.3e-102 374.0 270 75.2
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 6.0e-101 371.3 264 78.8
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 6.7e-100 367.9 270 73.7
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 9.7e-99 364.0 218 88.5
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.6e-98 363.2 262 76.0
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 1.5e-96 356.7 262 74.4
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 2.2e-95 352.8 226 81.0
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 2.9e-95 352.4 241 80.9
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 7.2e-94 347.8 210 85.7
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 2.7e-93 345.9 249 71.9
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 7.9e-93 344.4 238 74.8
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 3.0e-92 342.4 234 76.1
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 2.0e-91 339.7 214 84.1
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.8e-90 335.9 263 67.7
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 1.1e-89 334.0 223 76.7
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 1.2e-88 330.5 262 70.2
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 2.0e-88 329.7 218 78.4
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 2.4e-81 306.2 218 72.5
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 1.3e-79 300.4 247 69.6
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 1.7e-79 300.1 267 61.8
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 5.5e-78 295.0 229 65.1
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.7e-77 292.7 250 66.4
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 6.1e-77 291.6 204 78.9
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 2.8e-74 282.7 250 64.4
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 1.4e-73 280.4 208 70.7
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 3.2e-70 269.2 262 63.4
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 1.2e-69 267.3 270 57.8
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 8.8e-68 261.2 263 58.2
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 5.7e-67 258.5 209 66.5
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.7e-58 230.3 235 59.6
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 9.1e-57 224.6 246 52.0
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.1e-54 217.6 130 83.8
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 2.2e-50 203.4 120 85.8
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 3.7e-50 202.6 246 48.8
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 5.0e-47 192.2 138 75.4
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 7.3e-46 188.3 179 60.9
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 2.8e-45 186.4 118 84.7
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 4.7e-37 159.1 197 51.8
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 2.0e-35 153.7 141 63.8
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 1.4e-28 131.0 96 70.8
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 1.6e-24 117.5 69 88.4


User provided reference genes

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