Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 1.1e-215 753.1 394 100.0
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 1.4e-165 586.6 396 78.3
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 1.1e-157 560.5 392 76.5
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 5.8e-156 554.7 392 75.8
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 5.4e-154 548.1 392 74.7
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 2.5e-151 539.3 405 72.1
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 7.1e-146 521.2 399 70.2
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 7.1e-146 521.2 392 72.4
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 9.3e-146 520.8 394 73.6
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 9.3e-146 520.8 398 70.4
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 3.5e-145 518.8 399 69.9
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 1.0e-144 517.3 393 71.5
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 1.6e-142 510.0 399 68.9
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 3.7e-142 508.8 399 68.9
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 3.7e-142 508.8 392 72.4
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 6.2e-142 508.1 396 70.7
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 1.1e-141 507.3 393 69.7
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 1.1e-141 507.3 396 70.2
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 2.1e-137 493.0 396 68.2
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 2.3e-136 489.6 396 68.2
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 3.0e-136 489.2 389 67.9
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 1.3e-134 483.8 398 68.3
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 2.1e-134 483.0 389 66.8
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 2.8e-134 482.6 399 66.9
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 2.8e-134 482.6 302 82.5
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 4.8e-134 481.9 412 65.8
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 4.0e-133 478.8 392 67.3
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 4.0e-133 478.8 391 68.3
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 5.3e-133 478.4 396 66.9
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 6.9e-133 478.0 390 65.4
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 1.5e-132 476.9 403 64.8
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 3.4e-132 475.7 403 64.3
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 3.4e-132 475.7 388 66.8
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 5.8e-132 474.9 394 66.0
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 7.6e-132 474.6 390 64.9
Manes.07G080900 Manihot esculenta HOM05D005160 ORTHO05D006127 1.0e-131 474.2 302 81.1
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 1.0e-131 474.2 390 65.9
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 2.2e-131 473.0 390 65.6
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 3.8e-131 472.2 375 68.3
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 4.9e-131 471.9 392 65.6
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 6.5e-131 471.5 399 64.9
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 8.4e-131 471.1 387 64.3
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 1.4e-130 470.3 398 64.6
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 2.5e-130 469.5 399 64.2
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 3.2e-130 469.2 387 65.1
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 9.3e-130 467.6 389 65.0
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 9.3e-130 467.6 397 64.5
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 2.7e-129 466.1 393 65.6
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 3.5e-129 465.7 400 63.2
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 4.6e-129 465.3 396 65.7
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 6.7e-128 461.5 397 65.5
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 6.7e-128 461.5 400 66.2
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 8.7e-128 461.1 396 65.9
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 2.5e-127 459.5 402 65.9
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 2.5e-127 459.5 402 65.9
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 2.5e-127 459.5 395 63.0
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 3.3e-127 459.1 393 64.4
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 4.3e-127 458.8 396 65.4
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 1.3e-126 457.2 393 64.9
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 2.8e-126 456.1 394 62.9
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 4.8e-126 455.3 394 65.0
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 8.2e-126 454.5 402 65.7
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 1.4e-125 453.8 411 62.3
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 1.8e-125 453.4 388 63.4
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 4.1e-125 452.2 402 65.2
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 4.1e-125 452.2 402 65.4
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 5.3e-125 451.8 379 64.9
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 1.2e-124 450.7 379 64.6
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 3.4e-124 449.1 394 62.7
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 4.5e-124 448.7 396 62.1
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 1.3e-123 447.2 379 64.1
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 1.3e-123 447.2 393 63.1
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 1.7e-123 446.8 393 63.1
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 2.9e-123 446.0 388 63.4
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 3.8e-123 445.7 427 60.4
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 3.8e-123 445.7 386 63.0
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 1.1e-122 444.1 390 62.3
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 1.1e-122 444.1 389 62.0
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 1.4e-122 443.7 394 62.4
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 1.2e-121 440.7 399 63.7
CANSAT54G2532 Cannabis sativa HOM05D005160 ORTHO05D006127 2.1e-121 439.9 356 68.5
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 6.1e-121 438.3 453 56.1
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 2.3e-120 436.4 399 60.2
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 2.3e-120 436.4 454 56.4
Cpa.g.sc37.161 Carica papaya HOM05D005160 ORTHO05D006127 3.3e-119 432.6 353 66.6
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 7.4e-119 431.4 404 62.1
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 9.7e-119 431.0 392 61.7
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 9.7e-119 431.0 424 59.2
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 1.7e-118 430.3 410 59.0
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 2.2e-118 429.9 394 62.7
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 6.3e-118 428.3 396 60.4
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 1.8e-117 426.8 420 59.5
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 2.2e-115 419.9 350 66.9
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 1.4e-114 417.2 385 63.1
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 4.7e-113 412.1 394 60.9
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 2.3e-112 409.8 390 60.0
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 2.3e-112 409.8 393 60.3
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 2.8e-110 402.9 307 70.4
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 1.4e-109 400.6 412 57.8
BraA08t34366Z Brassica rapa HOM05D005160 ORTHO05D006127 2.4e-109 399.8 340 64.1
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 6.9e-109 398.3 402 57.0
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 1.4e-104 384.0 345 60.9
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 3.7e-102 375.9 436 51.4
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 5.0e-99 365.5 379 53.0
arahy.Tifrunner.gnm1.ann1.JXV2U6 Arachis hypogaea HOM05D005160 ORTHO05D006127 4.2e-98 362.5 333 61.3
arahy.Tifrunner.gnm1.ann1.IE9R9X Arachis hypogaea HOM05D005160 ORTHO05D006127 3.6e-97 359.4 333 60.7
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 2.9e-91 339.7 431 47.6
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 4.2e-90 335.9 380 55.8
Lj9A392T36 Lonicera japonica HOM05D005160 ORTHO05D006127 2.6e-79 300.1 280 61.1
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 8.0e-73 278.5 399 46.4
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 9.8e-71 271.6 226 62.4
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 1.2e-63 248.1 356 42.1
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 6.6e-59 232.3 372 38.7
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 2.2e-54 217.2 259 50.6
Lalb_Chr01g0001781 Lupinus albus HOM05D005160 ORTHO05D006127 1.9e-50 204.1 263 49.0
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 8.1e-49 198.7 391 33.8
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 7.6e-47 192.2 139 70.5
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 6.0e-44 182.6 139 67.6
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 1.0e-43 181.8 395 31.9
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 6.6e-43 179.1 139 66.9
CDE02G2974 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 5.3e-24 116.3 156 48.7
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 2.6e-23 114.0 78 73.1
VMungo1080G0079 Vigna mungo HOM05D005160 ORTHO05D006127 1.3e-22 111.7 157 46.5
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 3.2e-21 107.1 349 26.9
CDE04G1166 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 2.1e-20 104.4 159 44.0
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 1.3e-14 85.1 193 26.9
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 6.5e-14 82.8 259 25.9
PRCOL_00003313 Prasinoderma coloniale HOM05D005160 ORTHO05D006127 2.3e-11 74.3 398 23.4
RcHm_v2.0_Chr7g0187121 Rosa chinensis HOM05D005160 ORTHO05D006127 1.8e-08 64.7 44 75.0
MCO08G169 Micromonas commoda HOM05D005160 ORTHO05D006127 5.3e-08 63.2 218 26.6
MD08G1139200 Malus domestica HOM05D005160 ORTHO05D006127 2.9e-06 57.4 91 47.3
Glyma.08G315000 Glycine max HOM05D005160 ORTHO05D006127 3.8e-06 57.0 51 56.9


User provided reference genes

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