Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G092164 Manihot esculenta HOM05D004818 ORTHO05D005444 3.0e-47 191.4 93 100.0
Lsat_1_v5_gn_4_67521 Lactuca sativa HOM05D004818 ORTHO05D005444 3.5e-11 71.6 43 81.4
Manes.04G082300 Manihot esculenta HOM05D004818 ORTHO05D005444 1.0e-10 70.1 44 81.8
BcaC01g04504 Brassica carinata HOM05D004818 ORTHO05D005444 3.9e-10 68.2 57 59.6
HanXRQChr17g0551041 Helianthus annuus HOM05D004818 ORTHO05D005444 3.9e-10 68.2 40 85.0
PGR142G0584 Punica granatum HOM05D004818 ORTHO05D005444 5.1e-10 67.8 43 79.1
A03p32690 Brassica napus HOM05D004818 ORTHO05D005444 6.6e-10 67.4 40 80.0
A05p44830 Brassica napus HOM05D004818 ORTHO05D005444 6.6e-10 67.4 40 80.0
C03p39790 Brassica napus HOM05D004818 ORTHO05D005444 6.6e-10 67.4 40 80.0
BolC3t16243H Brassica oleracea HOM05D004818 ORTHO05D005444 6.6e-10 67.4 40 80.0
BraA03t12437Z Brassica rapa HOM05D004818 ORTHO05D005444 6.6e-10 67.4 40 80.0
Ciclev10029771m.g Citrus clementina HOM05D004818 ORTHO05D005444 6.6e-10 67.4 43 79.1
Lsat_1_v5_gn_8_127140 Lactuca sativa HOM05D004818 ORTHO05D005444 6.6e-10 67.4 40 85.0
TWI79G1427 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 6.6e-10 67.4 43 79.1
Aa31LG11G14220 Aethionema arabicum HOM05D004818 ORTHO05D005444 8.7e-10 67.0 46 71.7
Aa31LG5G12500 Aethionema arabicum HOM05D004818 ORTHO05D005444 1.1e-09 66.6 40 80.0
CANSAT11G1677 Cannabis sativa HOM05D004818 ORTHO05D005444 1.1e-09 66.6 44 75.0
CiPaw.06G127200 Carya illinoinensis HOM05D004818 ORTHO05D005444 1.1e-09 66.6 44 75.0
Cfa005123 Carpinus fangiana HOM05D004818 ORTHO05D005444 1.5e-09 66.2 44 75.0
CiPaw.05G074500 Carya illinoinensis HOM05D004818 ORTHO05D005444 1.5e-09 66.2 40 80.0
Gohir.A04G123300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 1.5e-09 66.2 43 76.7
AL3G11130 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 1.9e-09 65.9 40 77.5
BcaC05g30492 Brassica carinata HOM05D004818 ORTHO05D005444 1.9e-09 65.9 40 77.5
Oeu020676.1 Olea europaea HOM05D004818 ORTHO05D005444 1.9e-09 65.9 53 66.0
Potri.004G164066 Populus trichocarpa HOM05D004818 ORTHO05D005444 1.9e-09 65.9 43 76.7
Potri.009G125832 Populus trichocarpa HOM05D004818 ORTHO05D005444 1.9e-09 65.9 43 76.7
CSS0029185 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 2.5e-09 65.5 46 69.6
CSS0030409 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 2.5e-09 65.5 52 61.5
Carub.0003s0104 Capsella rubella HOM05D004818 ORTHO05D005444 2.5e-09 65.5 40 77.5
MD00G1066700 Malus domestica HOM05D004818 ORTHO05D005444 2.5e-09 65.5 43 76.7
C09p75420 Brassica napus HOM05D004818 ORTHO05D005444 3.3e-09 65.1 40 77.5
PGR042G0239 Punica granatum HOM05D004818 ORTHO05D005444 3.3e-09 65.1 40 77.5
Sabra09G0096800 Salix brachista HOM05D004818 ORTHO05D005444 3.3e-09 65.1 43 76.7
TWI31G1300 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 3.3e-09 65.1 43 76.7
TWI75G0908 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 3.3e-09 65.1 43 76.7
Atru.chr5.3177 Acer truncatum HOM05D004818 ORTHO05D005444 4.3e-09 64.7 44 72.7
AL6G26200 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 4.3e-09 64.7 43 74.4
AT5G15320 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 4.3e-09 64.7 43 74.4
Carub.0006s1351 Capsella rubella HOM05D004818 ORTHO05D005444 4.3e-09 64.7 43 74.4
Glyma.12G036000 Glycine max HOM05D004818 ORTHO05D005444 4.3e-09 64.7 44 72.7
BraA05t23174Z Brassica rapa HOM05D004818 ORTHO05D005444 5.6e-09 64.3 41 73.2
Gohir.A12G040700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 5.6e-09 64.3 43 74.4
Gohir.D04G165300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 5.6e-09 64.3 43 74.4
Lj3g0020574 Lotus japonicus HOM05D004818 ORTHO05D005444 5.6e-09 64.3 43 74.4
Prupe.8G082400 Prunus persica HOM05D004818 ORTHO05D005444 5.6e-09 64.3 43 74.4
BcaC05g30384 Brassica carinata HOM05D004818 ORTHO05D005444 7.3e-09 63.9 40 75.0
CAN.G1329.6 Capsicum annuum HOM05D004818 ORTHO05D005444 7.3e-09 63.9 44 70.5
Eucgr.I01336 Eucalyptus grandis HOM05D004818 ORTHO05D005444 7.3e-09 63.9 43 72.1
MD10G1061700 Malus domestica HOM05D004818 ORTHO05D005444 7.3e-09 63.9 43 74.4
Manes.18G015600 Manihot esculenta HOM05D004818 ORTHO05D005444 7.3e-09 63.9 44 72.7
SalBow3G2817 Salvia bowleyana HOM05D004818 ORTHO05D005444 7.3e-09 63.9 43 72.1
Sp3g00990 Schrenkiella parvula HOM05D004818 ORTHO05D005444 7.3e-09 63.9 40 75.0
COL.COLO4_10615 Corchorus olitorius HOM05D004818 ORTHO05D005444 9.6e-09 63.5 43 72.1
Duzib132G0136 Durio zibethinus HOM05D004818 ORTHO05D005444 9.6e-09 63.5 40 77.5
Thhalv10015231m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 9.6e-09 63.5 43 74.4
Medtr4g072130 Medicago truncatula HOM05D004818 ORTHO05D005444 9.6e-09 63.5 44 70.5
MELO3C013404.2 Cucumis melo HOM05D004818 ORTHO05D005444 1.3e-08 63.2 44 75.0
CsaV3_7G000550 Cucumis sativus L. HOM05D004818 ORTHO05D005444 1.3e-08 63.2 44 75.0
Rhsim05G0067400 Rhododendron simsii HOM05D004818 ORTHO05D005444 1.3e-08 63.2 38 78.9
Sed0018748 Sechium edule HOM05D004818 ORTHO05D005444 1.3e-08 63.2 44 75.0
TAR381G0131 Trochodendron aralioides HOM05D004818 ORTHO05D005444 1.3e-08 63.2 44 70.5
TAR625G1092 Trochodendron aralioides HOM05D004818 ORTHO05D005444 1.3e-08 63.2 44 70.5
Eucgr.G01742 Eucalyptus grandis HOM05D004818 ORTHO05D005444 1.6e-08 62.8 43 72.1
Lalb_Chr03g0025281 Lupinus albus HOM05D004818 ORTHO05D005444 1.6e-08 62.8 44 72.7
Sp6g28750 Schrenkiella parvula HOM05D004818 ORTHO05D005444 1.6e-08 62.8 43 74.4
Thecc.02G073200 Theobroma cacao HOM05D004818 ORTHO05D005444 1.6e-08 62.8 43 72.1
AT3G01130 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 2.1e-08 62.4 38 76.3
arahy.Tifrunner.gnm1.ann1.LS9ND1 Arachis hypogaea HOM05D004818 ORTHO05D005444 2.1e-08 62.4 38 78.9
BcaB08g36903 Brassica carinata HOM05D004818 ORTHO05D005444 2.1e-08 62.4 39 76.9
BcaC04g18956 Brassica carinata HOM05D004818 ORTHO05D005444 2.1e-08 62.4 39 76.9
C09p61780 Brassica napus HOM05D004818 ORTHO05D005444 2.1e-08 62.4 39 76.9
BolC9t59016H Brassica oleracea HOM05D004818 ORTHO05D005444 2.1e-08 62.4 39 76.9
Cpa.g.sc150.3 Carica papaya HOM05D004818 ORTHO05D005444 2.1e-08 62.4 43 74.4
Phvul.011G038100 Phaseolus vulgaris HOM05D004818 ORTHO05D005444 2.1e-08 62.4 44 70.5
Sed0015314 Sechium edule HOM05D004818 ORTHO05D005444 2.1e-08 62.4 44 70.5
THA.LOC104821019 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 2.1e-08 62.4 43 72.1
Duzib248G1544 Durio zibethinus HOM05D004818 ORTHO05D005444 2.8e-08 62.0 38 78.9
FvH4_2g40204 Fragaria vesca HOM05D004818 ORTHO05D005444 2.8e-08 62.0 50 64.0
Gohir.A13G086700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 2.8e-08 62.0 43 72.1
Potri.002G024900 Populus trichocarpa HOM05D004818 ORTHO05D005444 2.8e-08 62.0 43 72.1
vmacro17409 Vaccinium macrocarpon HOM05D004818 ORTHO05D005444 2.8e-08 62.0 39 76.9
A10p23550 Brassica napus HOM05D004818 ORTHO05D005444 3.6e-08 61.6 39 74.4
BraA10t44421Z Brassica rapa HOM05D004818 ORTHO05D005444 3.6e-08 61.6 39 74.4
CARHR197990 Cardamine hirsuta HOM05D004818 ORTHO05D005444 3.6e-08 61.6 40 70.0
Ca_09579_v3 Cicer arietinum L. HOM05D004818 ORTHO05D005444 3.6e-08 61.6 43 69.8
Duzib052G0912 Durio zibethinus HOM05D004818 ORTHO05D005444 3.6e-08 61.6 43 72.1
FAN15G2220 Fragaria x ananassa HOM05D012912 ORTHO05D005444 3.6e-08 61.6 40 75.0
Rhsim11G0184800 Rhododendron simsii HOM05D004818 ORTHO05D005444 3.6e-08 61.6 45 71.1
VMungo1127G0843 Vigna mungo HOM05D004818 ORTHO05D005444 3.6e-08 61.6 44 68.2
CARHR075920 Cardamine hirsuta HOM05D004818 ORTHO05D005444 4.8e-08 61.2 37 78.4
Ciclev10003088m.g Citrus clementina HOM05D004818 ORTHO05D005444 4.8e-08 61.2 40 72.5
Gohir.D13G090600 Gossypium hirsutum HOM05D004818 ORTHO05D005444 4.8e-08 61.2 43 72.1
Gorai.001G244100 Gossypium raimondii HOM05D004818 ORTHO05D005444 4.8e-08 61.2 43 72.1
Nn5g29275 Nelumbo nucifera HOM05D004818 ORTHO05D005444 4.8e-08 61.2 38 76.3
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 4.8e-08 61.2 40 75.0
Atru.chr13.327 Acer truncatum HOM05D004818 ORTHO05D005444 6.2e-08 60.8 39 76.9
BcaB08g36904 Brassica carinata HOM05D004818 ORTHO05D005444 6.2e-08 60.8 39 74.4
BolC5t35118H Brassica oleracea HOM05D004818 ORTHO05D005444 6.2e-08 60.8 40 70.0
Thhalv10021899m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 6.2e-08 60.8 40 72.5
Nn6g32305 Nelumbo nucifera HOM05D004818 ORTHO05D005444 6.2e-08 60.8 38 76.3
TAR628G1422 Trochodendron aralioides HOM05D004818 ORTHO05D005444 6.2e-08 60.8 44 68.2
ClCG05G018500 Citrullus lanatus HOM05D004818 ORTHO05D005444 8.1e-08 60.5 44 65.9
FAN15G1739 Fragaria x ananassa HOM05D004818 ORTHO05D005444 8.1e-08 60.5 44 68.2
Sed0003347 Sechium edule HOM05D004818 ORTHO05D005444 8.1e-08 60.5 44 70.5
Sed0012644 Sechium edule HOM05D004818 ORTHO05D005444 8.1e-08 60.5 44 68.2
CiPaw.09G132900 Carya illinoinensis HOM05D004818 ORTHO05D005444 1.1e-07 60.1 44 68.2
MELO3C003769.2 Cucumis melo HOM05D004818 ORTHO05D005444 1.1e-07 60.1 38 76.3
Sc18g0005450 Simmondsia chinensis HOM05D004818 ORTHO05D005444 1.1e-07 60.1 40 70.0
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 1.4e-07 59.7 39 74.4
Prupe.1G368600 Prunus persica HOM05D004818 ORTHO05D005444 1.4e-07 59.7 44 65.9
Solyc01g110540.3 Solanum lycopersicum HOM05D004818 ORTHO05D005444 1.4e-07 59.7 44 68.2
PGSC0003DMG400001656 Solanum tuberosum HOM05D004818 ORTHO05D005444 1.4e-07 59.7 44 68.2
GSVIVG01009863001 Vitis vinifera HOM05D004818 ORTHO05D005444 1.4e-07 59.7 40 72.5
CDE02G1235 Ceratophyllum demersum HOM05D004818 ORTHO05D005444 1.8e-07 59.3 39 74.4
Cc09_g06640 Coffea canephora HOM05D000190 ORTHO05D005444 1.8e-07 59.3 38 76.3
CsaV3_3G045680 Cucumis sativus L. HOM05D004818 ORTHO05D005444 1.8e-07 59.3 38 76.3
FvH4_2g40200 Fragaria vesca HOM05D004818 ORTHO05D005444 1.8e-07 59.3 50 62.0
THA.LOC109116196 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 1.8e-07 59.3 50 60.0
Peaxi162Scf00362g01160 Petunia axillaris HOM05D004818 ORTHO05D005444 2.4e-07 58.9 42 71.4
Gohir.D12G031701 Gossypium hirsutum HOM05D004818 ORTHO05D005444 4.0e-07 58.2 43 67.4
RcHm_v2.0_Chr6g0268521 Rosa chinensis HOM05D004818 ORTHO05D005444 4.0e-07 58.2 44 65.9
Hund06293 Selenicereus undatus HOM05D004818 ORTHO05D005444 4.0e-07 58.2 39 71.8
A03p07110 Brassica napus HOM05D004818 ORTHO05D005444 5.3e-07 57.8 39 71.8
C03p08100 Brassica napus HOM05D004818 ORTHO05D005444 5.3e-07 57.8 39 71.8
BolC3t13307H Brassica oleracea HOM05D004818 ORTHO05D005444 5.3e-07 57.8 39 71.8
BraA03t10033Z Brassica rapa HOM05D004818 ORTHO05D005444 5.3e-07 57.8 39 71.8
FAN20G1549 Fragaria x ananassa HOM05D004818 ORTHO05D005444 5.3e-07 57.8 39 71.8
Lalb_Chr01g0002101 Lupinus albus HOM05D004818 ORTHO05D005444 5.3e-07 57.8 44 68.2
Lalb_Chr19g0139031 Lupinus albus HOM05D004818 ORTHO05D005444 5.3e-07 57.8 44 68.2
Hund00173 Selenicereus undatus HOM05D004818 ORTHO05D005444 5.3e-07 57.8 39 74.4
Peaxi162Scf00538g00229 Petunia axillaris HOM05D004818 ORTHO05D005444 6.9e-07 57.4 43 65.1
ClCG02G004430 Citrullus lanatus HOM05D004818 ORTHO05D005444 9.0e-07 57.0 35 82.9
Hund00181 Selenicereus undatus HOM05D004818 ORTHO05D005444 9.0e-07 57.0 36 75.0
RcHm_v2.0_Chr6g0302511 Rosa chinensis HOM05D004818 ORTHO05D005444 1.2e-06 56.6 43 65.1
PGSC0003DMG400004424 Solanum tuberosum HOM05D004818 ORTHO05D005444 1.5e-06 56.2 43 67.4
Atru.chr10.813 Acer truncatum HOM05D004818 ORTHO05D005444 2.0e-06 55.8 44 65.9
Potri.005G236500 Populus trichocarpa HOM05D004818 ORTHO05D005444 2.0e-06 55.8 44 65.9
CAN.G104.4 Capsicum annuum HOM05D004818 ORTHO05D005444 2.6e-06 55.5 43 67.4
Migut.N01294 Erythranthe guttata HOM05D004818 ORTHO05D005444 2.6e-06 55.5 43 67.4
SalBow6G3605 Salvia bowleyana HOM05D004818 ORTHO05D005444 3.4e-06 55.1 39 69.2
THA.LOC104805479 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 7.6e-06 53.9 40 65.0
SMO358G0321 Selaginella moellendorffii HOM05D004818 ORTHO05D005444 9.9e-06 53.5 41 68.3


User provided reference genes

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