Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G092006 Manihot esculenta HOM05D000586 ORTHO05D008681 4.4e-116 421.4 226 100.0
Potri.004G164200 Populus trichocarpa HOM05D000586 ORTHO05D008681 1.7e-80 303.1 228 76.3
Sabra04G0110300 Salix brachista HOM05D000586 ORTHO05D008681 7.3e-79 297.7 230 75.7
Thecc.02G073100 Theobroma cacao HOM05D000586 ORTHO05D008681 1.3e-75 287.0 216 75.9
Ciclev10029227m.g Citrus clementina HOM05D000586 ORTHO05D008681 1.7e-75 286.6 228 72.4
Duzib052G0483 Durio zibethinus HOM05D000586 ORTHO05D008681 8.4e-75 284.3 204 77.5
Cpa.g.sc150.2 Carica papaya HOM05D000586 ORTHO05D008681 1.1e-74 283.9 221 74.7
FAN20G2293 Fragaria x ananassa HOM05D000586 ORTHO05D008681 1.9e-74 283.1 209 76.1
THA.LOC104807288 Tarenaya hassleriana HOM05D000586 ORTHO05D008681 1.6e-73 280.0 219 74.0
FAN24G2793 Fragaria x ananassa HOM05D000586 ORTHO05D008681 2.1e-73 279.6 209 75.6
Gorai.001G244200 Gossypium raimondii HOM05D000586 ORTHO05D008681 4.6e-73 278.5 203 76.4
Gohir.D13G090500 Gossypium hirsutum HOM05D000586 ORTHO05D008681 7.9e-73 277.7 203 76.4
FvH4_2g10740 Fragaria vesca HOM05D000586 ORTHO05D008681 2.3e-72 276.2 209 75.1
RcHm_v2.0_Chr6g0268531 Rosa chinensis HOM05D000586 ORTHO05D008681 5.1e-72 275.0 209 74.2
TAR381G1606 Trochodendron aralioides HOM05D000586 ORTHO05D008681 2.5e-71 272.7 228 71.5
QL11p046751 Quercus lobata HOM05D000586 ORTHO05D008681 4.3e-71 271.9 215 72.6
Nn6g32309 Nelumbo nucifera HOM05D000586 ORTHO05D008681 7.3e-71 271.2 240 67.1
Carub.0007s0556 Capsella rubella HOM05D000586 ORTHO05D008681 1.3e-70 270.4 218 70.6
MD00G1066800 Malus domestica HOM05D000586 ORTHO05D008681 1.3e-70 270.4 209 72.7
BolC7t46503H Brassica oleracea HOM05D000586 ORTHO05D008681 2.8e-70 269.2 219 71.2
AL7G16470 Arabidopsis lyrata HOM05D000586 ORTHO05D008681 4.8e-70 268.5 218 71.1
PGR042G2570 Punica granatum HOM05D000586 ORTHO05D008681 6.2e-70 268.1 224 70.1
CARHR243030 Cardamine hirsuta HOM05D000586 ORTHO05D008681 8.1e-70 267.7 217 70.5
CiPaw.05G074600 Carya illinoinensis HOM05D000586 ORTHO05D008681 8.1e-70 267.7 222 70.7
Sp7g32510 Schrenkiella parvula HOM05D000586 ORTHO05D008681 8.1e-70 267.7 218 71.6
C07p60740 Brassica napus HOM05D000586 ORTHO05D001010 1.4e-69 266.9 218 70.2
FAN15G3000 Fragaria x ananassa HOM05D000586 ORTHO05D008681 5.3e-69 265.0 167 85.6
AT4G34730 Arabidopsis thaliana HOM05D000586 ORTHO05D008681 6.9e-69 264.6 203 73.9
Prupe.8G082300 Prunus persica HOM05D000586 ORTHO05D008681 1.5e-68 263.5 219 69.4
Dinv41988 Davidia involucrata HOM05D000586 ORTHO05D008681 2.0e-68 263.1 226 69.9
BcaNung04297 Brassica carinata HOM05D000586 ORTHO05D008681 4.5e-68 261.9 219 69.9
BcaNung00666 Brassica carinata HOM05D000586 ORTHO05D008681 5.8e-68 261.5 219 69.9
Haze_02225 Corylus avellana HOM05D000586 ORTHO05D008681 7.6e-68 261.2 224 68.3
Thhalv10026220m.g Eutrema salsugineum HOM05D000586 ORTHO05D008681 7.6e-68 261.2 218 69.7
Aa31LG2G15790 Aethionema arabicum HOM05D000586 ORTHO05D008681 1.7e-67 260.0 218 70.2
Actinidia20476 Actinidia chinensis HOM05D000586 ORTHO05D008681 4.9e-67 258.5 216 71.8
A01p03780 Brassica napus HOM05D000586 ORTHO05D003356 4.9e-67 258.5 217 68.7
C01p04060 Brassica napus HOM05D000586 ORTHO05D003356 4.9e-67 258.5 217 69.1
BraA01t00363Z Brassica rapa HOM05D000586 ORTHO05D008681 8.4e-67 257.7 219 68.5
BolC1t00397H Brassica oleracea HOM05D000586 ORTHO05D003356 1.1e-66 257.3 216 69.4
Sed0014971 Sechium edule HOM05D000586 ORTHO05D008681 1.1e-66 257.3 222 68.0
ClCG11G003770 Citrullus lanatus HOM05D000586 ORTHO05D008681 7.1e-66 254.6 228 67.5
Eucgr.G01743 Eucalyptus grandis HOM05D000586 ORTHO05D008681 7.1e-66 254.6 226 66.8
CsaV3_2G015360 Cucumis sativus L. HOM05D000586 ORTHO05D008681 3.5e-65 252.3 231 65.4
A03p63110 Brassica napus HOM05D000586 ORTHO05D001010 7.9e-65 251.1 217 67.7
BraA03t15387Z Brassica rapa HOM05D000586 ORTHO05D008681 7.9e-65 251.1 217 67.7
Nitab4.5_0010885g0020 Nicotiana tabacum HOM05D000586 ORTHO05D008681 1.0e-64 250.8 171 82.5
SalBow6G4654 Salvia bowleyana HOM05D000586 ORTHO05D008681 1.8e-64 250.0 175 79.4
Dinv23444 Davidia involucrata HOM05D000586 ORTHO05D008681 6.7e-64 248.1 225 64.9
MBI05_g26502_MAGBIO Magnolia biondii HOM05D000586 ORTHO05D008681 6.7e-64 248.1 224 66.5
Aqoxy5G01445 Aquilegia oxysepala HOM05D000586 ORTHO05D008681 3.3e-63 245.7 184 73.9
Nitab4.5_0002096g0050 Nicotiana tabacum HOM05D000586 ORTHO05D008681 5.6e-63 245.0 235 66.4
Lsat_1_v5_gn_4_67621 Lactuca sativa HOM05D000586 ORTHO05D008681 2.1e-62 243.0 170 78.2
Gohir.A13G086800 Gossypium hirsutum HOM05D000586 ORTHO05D008681 6.2e-62 241.5 204 70.6
MSTRG.20023 Avicennia marina HOM05D000586 ORTHO05D008681 1.1e-61 240.7 216 67.6
VMungo1309G1236 Vigna mungo HOM05D000586 ORTHO05D008681 1.4e-61 240.4 170 74.7
Peaxi162Scf00362g01176 Petunia axillaris HOM05D000586 ORTHO05D008681 1.8e-61 240.0 229 66.8
Lj1g0002953 Lotus japonicus HOM05D000586 ORTHO05D008681 2.4e-61 239.6 171 77.8
Phvul.009G002100 Phaseolus vulgaris HOM05D000586 ORTHO05D008681 2.4e-61 239.6 179 72.1
EL10Ac9g21609 Beta vulgaris HOM05D000586 ORTHO05D008681 4.0e-61 238.8 177 74.6
PGSC0003DMG400001616 Solanum tuberosum HOM05D000586 ORTHO05D008681 4.0e-61 238.8 171 80.1
Ah.01g018630 Amaranthus hybridus HOM05D000586 ORTHO05D008681 1.2e-60 237.3 177 74.0
MELO3C020750.2 Cucumis melo HOM05D000586 ORTHO05D008681 1.5e-60 236.9 251 59.8
arahy.Tifrunner.gnm1.ann1.89FNHL Arachis hypogaea HOM05D000586 ORTHO05D008681 3.4e-60 235.7 206 68.4
DCAR_022927 Daucus carota HOM05D000586 ORTHO05D008681 3.4e-60 235.7 171 77.2
Glyma.06G007300 Glycine max HOM05D000586 ORTHO05D008681 3.4e-60 235.7 170 77.1
arahy.Tifrunner.gnm1.ann1.I5P0FU Arachis hypogaea HOM05D000586 ORTHO05D008681 5.8e-60 235.0 203 69.0
ECA234G3975 Erigeron canadensis HOM05D000586 ORTHO05D008681 5.8e-60 235.0 159 81.8
CDE01G0237 Ceratophyllum demersum HOM05D000586 ORTHO05D008681 1.0e-59 234.2 229 65.5
Solyc01g110550.3 Solanum lycopersicum HOM05D000586 ORTHO05D008681 3.8e-59 232.3 170 79.4
COL.COLO4_10614 Corchorus olitorius HOM05D000586 ORTHO05D008681 4.9e-59 231.9 182 74.2
Sc08g0000980 Simmondsia chinensis HOM05D000586 ORTHO05D008681 4.9e-59 231.9 185 70.8
Lalb_Chr16g0391381 Lupinus albus HOM05D000586 ORTHO05D008681 6.5e-59 231.5 171 76.6
Oeu020677.1 Olea europaea HOM05D000586 ORTHO05D008681 8.4e-59 231.1 171 77.2
HanXRQChr10g0294191 Helianthus annuus HOM05D000586 ORTHO05D008681 1.1e-58 230.7 172 75.0
Sopen01g052670 Solanum pennellii HOM05D000586 ORTHO05D008681 3.2e-58 229.2 213 69.0
PSO170G6416 Papaver somniferum HOM05D000586 ORTHO05D008681 4.2e-58 228.8 232 59.9
PSO210G2611 Papaver somniferum HOM05D000586 ORTHO05D008681 3.5e-57 225.7 231 59.7
Migut.B00127 Erythranthe guttata HOM05D000586 ORTHO05D008681 6.0e-57 224.9 234 61.5
Hund06294 Selenicereus undatus HOM05D000586 ORTHO05D008681 1.0e-56 224.2 189 65.1
CAN.G1329.7 Capsicum annuum HOM05D000586 ORTHO05D008681 3.0e-56 222.6 219 64.4
Ca_15328_v3 Cicer arietinum L. HOM05D000586 ORTHO05D008681 3.0e-56 222.6 180 69.4
Medtr3g117600 Medicago truncatula HOM05D000586 ORTHO05D008681 3.0e-56 222.6 181 68.5
Zm00001eb377790 Zea mays HOM05D000586 ORTHO05D008681 6.7e-56 221.5 204 64.2
GSVIVG01024154001 Vitis vinifera HOM05D000586 ORTHO05D008681 8.7e-56 221.1 149 85.2
Duzib132G1196 Durio zibethinus HOM05D000586 ORTHO05D008681 1.1e-55 220.7 238 60.1
AUR62010365 Chenopodium quinoa HOM05D000586 ORTHO05D008681 1.6e-54 216.9 173 71.7
Hma1.2p1_0032F.1_g019990 Hydrangea macrophylla HOM05D000586 ORTHO05D008681 2.8e-54 216.1 124 91.1
AUR62016853 Chenopodium quinoa HOM05D000586 ORTHO05D008681 4.8e-54 215.3 227 61.2
Lj9A383T66 Lonicera japonica HOM05D000586 ORTHO05D008681 8.2e-54 214.5 199 64.3
HPP92_020672 Vanilla planifolia HOM05D000586 ORTHO05D008681 1.8e-53 213.4 178 70.2
Cc02_g16800 Coffea canephora HOM05D000586 ORTHO05D008681 3.1e-53 212.6 151 81.5
Os06g0137600 Oryza sativa ssp. japonica HOM05D000586 ORTHO05D008681 6.9e-53 211.5 207 60.4
unitig_60.g25431 Utricularia gibba HOM05D000586 ORTHO05D008681 6.9e-53 211.5 162 75.3
Psat5g000280 Pisum sativum HOM05D000586 ORTHO05D008681 1.2e-52 210.7 184 65.8
CANSAT11G1696 Cannabis sativa HOM05D000586 ORTHO05D008681 4.5e-52 208.8 185 69.2
VMungo1309G1424 Vigna mungo HOM05D000586 ORTHO05D008681 3.5e-49 199.1 121 84.3
Lj9A385G33 Lonicera japonica HOM05D000586 ORTHO05D008681 4.6e-49 198.7 187 63.6
Oeu046110.1 Olea europaea HOM05D000586 ORTHO05D008681 4.6e-49 198.7 159 75.5
SMO337G0057 Selaginella moellendorffii HOM05D000586 ORTHO05D008681 1.0e-48 197.6 167 62.3
vmacro02046 Vaccinium macrocarpon HOM05D000586 ORTHO05D008681 2.3e-48 196.4 122 84.4
vmacro22695 Vaccinium macrocarpon HOM05D000586 ORTHO05D008681 2.3e-48 196.4 122 84.4
SGA_v2.0_scaffold58G20435 Striga asiatica HOM05D000586 ORTHO05D008681 4.3e-47 192.2 262 49.6
AagrBONN_evm.TU.Sc2ySwM_228.435 Anthoceros agrestis HOM05D000586 ORTHO05D008681 3.4e-44 182.6 148 61.5
Rhsim11G0184900 Rhododendron simsii HOM05D000586 ORTHO05D008681 1.7e-43 180.3 243 51.4
CBR_g38914 Chara braunii HOM05D000586 ORTHO05D008681 4.2e-42 175.6 134 65.7
Pp3c12_16410 Physcomitrium patens HOM05D000586 ORTHO05D008681 1.6e-41 173.7 164 57.9
TPR.G32182 Trifolium pratense HOM05D000586 ORTHO05D008681 6.1e-41 171.8 149 63.8
Mapoly0005s0278 Marchantia polymorpha HOM05D000586 ORTHO05D008681 3.3e-39 166.0 194 50.0
CSS0047409 Camellia sinensis var. sinensis HOM05D000586 ORTHO05D008681 2.2e-35 153.3 108 78.7
Sed0014045 Sechium edule HOM05D000586 ORTHO05D008681 9.4e-34 147.9 167 56.3
Atru.chr5.3178 Acer truncatum HOM05D000586 ORTHO05D008681 8.8e-32 141.4 98 76.5
MCO15G163 Micromonas commoda HOM05D000586 ORTHO05D008681 1.1e-31 141.0 170 46.5
ATR0910G002 Amborella trichopoda HOM05D000586 ORTHO05D008681 2.0e-28 130.2 119 64.7
SEGI_30788 Sequoiadendron giganteum HOM05D000586 ORTHO05D008681 4.2e-26 122.5 98 63.3
Cre02.g145000 Chlamydomonas reinhardtii HOM05D000586 ORTHO05D008681 9.4e-26 121.3 171 44.4
VMungo0720G0167 Vigna mungo HOM05D000028 ORTHO05D001812 7.5e-23 111.7 90 66.7
Nn017s41473 Nelumbo nucifera HOM05D000586 ORTHO05D008681 8.2e-22 108.2 84 75.0
PRCOL_00004217 Prasinoderma coloniale HOM05D000586 ORTHO05D008681 2.4e-21 106.7 156 39.1
BcaB07g33434 Brassica carinata HOM05D000586 ORTHO05D008681 2.9e-19 99.8 71 78.9
MD10G1061600 Malus domestica HOM05D000586 ORTHO05D008681 3.2e-18 96.3 147 43.5


User provided reference genes

Program Settings