Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G091000 Manihot esculenta HOM05D008028 ORTHO05D010005 3.7e-48 194.5 96 100.0
Manes.04G086850 Manihot esculenta HOM05D008028 ORTHO05D010005 3.3e-28 128.3 82 78.0
QL11p045140 Quercus lobata HOM05D008028 ORTHO05D010005 2.7e-22 108.6 85 65.9
QL11p045265 Quercus lobata HOM05D008028 ORTHO05D010005 2.7e-22 108.6 85 65.9
Sabra09G0092600 Salix brachista HOM05D008028 ORTHO05D010005 4.6e-22 107.8 86 61.6
Sabra04G0106000 Salix brachista HOM05D000041 ORTHO05D010005 6.0e-22 107.5 82 64.6
CiPaw.05G070000 Carya illinoinensis HOM05D008028 ORTHO05D010005 1.0e-21 106.7 83 65.1
Potri.009G120300 Populus trichocarpa HOM05D008028 ORTHO05D010005 1.7e-21 105.9 83 62.7
COL.COLO4_25993 Corchorus olitorius HOM05D008028 ORTHO05D010005 3.0e-21 105.1 82 62.2
Thecc.02G080100 Theobroma cacao HOM05D008028 ORTHO05D010005 5.1e-21 104.4 83 61.4
Cfa005059 Carpinus fangiana HOM05D008028 ORTHO05D010005 6.6e-21 104.0 78 67.9
Haze_02324 Corylus avellana HOM05D008028 ORTHO05D010005 6.6e-21 104.0 85 64.7
Hma1.2p1_0066F.1_g036100 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 1.9e-20 102.4 85 63.5
Dinv42036 Davidia involucrata HOM05D008028 ORTHO05D010005 4.3e-20 101.3 83 62.7
Eucgr.G01698 Eucalyptus grandis HOM05D008028 ORTHO05D010005 2.8e-19 98.6 76 67.1
ClCG02G004770 Citrullus lanatus HOM05D008028 ORTHO05D010005 3.6e-19 98.2 73 64.4
MD10G1068400 Malus domestica HOM05D008028 ORTHO05D010005 4.7e-19 97.8 76 67.1
RcHm_v2.0_Chr6g0266031 Rosa chinensis HOM05D008028 ORTHO05D010005 6.2e-19 97.4 87 59.8
FvH4_2g09740 Fragaria vesca HOM05D008028 ORTHO05D010005 8.1e-19 97.1 79 63.3
FAN15G3565 Fragaria x ananassa HOM05D008028 ORTHO05D010005 8.1e-19 97.1 79 63.3
FAN24G2608 Fragaria x ananassa HOM05D008028 ORTHO05D010005 8.1e-19 97.1 79 63.3
FAN24G3146 Fragaria x ananassa HOM05D008028 ORTHO05D010005 8.1e-19 97.1 79 63.3
MD05G1060500 Malus domestica HOM05D008028 ORTHO05D010005 1.1e-18 96.7 76 65.8
Prupe.8G090300 Prunus persica HOM05D008028 ORTHO05D010005 1.4e-18 96.3 77 66.2
FAN20G2021 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.8e-18 95.9 78 64.1
Sed0023664 Sechium edule HOM05D008028 ORTHO05D010005 1.8e-18 95.9 75 62.7
FAN27G0523 Fragaria x ananassa HOM05D008028 ORTHO05D010005 3.1e-18 95.1 79 64.6
Atru.chr5.3084 Acer truncatum HOM05D008028 ORTHO05D010005 5.2e-18 94.4 85 58.8
CsaV3_7G000150 Cucumis sativus L. HOM05D008028 ORTHO05D010005 5.2e-18 94.4 75 62.7
Lj1g0026701 Lotus japonicus HOM05D008028 ORTHO05D010005 5.2e-18 94.4 82 62.2
Actinidia00552 Actinidia chinensis HOM05D008028 ORTHO05D010005 6.8e-18 94.0 84 59.5
CSS0001295 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 8.9e-18 93.6 85 62.4
Phvul.009G004900 Phaseolus vulgaris HOM05D008028 ORTHO05D010005 2.0e-17 92.4 83 59.0
CSS0038379 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 2.6e-17 92.0 85 61.2
TAR628G0762 Trochodendron aralioides HOM05D008028 ORTHO05D010005 3.4e-17 91.7 76 61.8
Gohir.A01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 4.4e-17 91.3 85 56.5
Nn1g05797 Nelumbo nucifera HOM05D008028 ORTHO05D010005 4.4e-17 91.3 77 62.3
Ciclev10029664m.g Citrus clementina HOM05D008028 ORTHO05D010005 5.8e-17 90.9 86 55.8
Medtr3g117240 Medicago truncatula HOM05D008028 ORTHO05D010005 5.8e-17 90.9 84 59.5
Glyma.04G009700 Glycine max HOM05D008028 ORTHO05D010005 1.7e-16 89.4 84 59.5
GSVIVG01023830001 Vitis vinifera HOM05D008028 ORTHO05D010005 1.7e-16 89.4 82 57.3
TPR.G32190 Trifolium pratense HOM05D008028 ORTHO05D010005 4.9e-16 87.8 82 58.5
arahy.Tifrunner.gnm1.ann1.JRR1U5 Arachis hypogaea HOM05D008028 ORTHO05D010005 6.4e-16 87.4 83 57.8
Glyma.06G009600 Glycine max HOM05D008028 ORTHO05D010005 6.4e-16 87.4 84 58.3
Gohir.D01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 6.4e-16 87.4 85 54.1
Gorai.002G005100 Gossypium raimondii HOM05D008028 ORTHO05D010005 6.4e-16 87.4 85 54.1
CANSAT11G2137 Cannabis sativa HOM05D008028 ORTHO05D010005 1.1e-15 86.7 67 70.1
Potri.004G158800 Populus trichocarpa HOM05D008028 ORTHO05D010005 1.9e-15 85.9 60 66.7
Actinidia07487 Actinidia chinensis HOM05D008028 ORTHO05D010005 2.4e-15 85.5 83 59.0
Rhsim11G0180600 Rhododendron simsii HOM05D008028 ORTHO05D010005 1.2e-14 83.2 74 56.8
MELO3C029051.2 Cucumis melo HOM05D008028 ORTHO05D010005 2.1e-14 82.4 60 68.3
Nn5g29713 Nelumbo nucifera HOM05D008028 ORTHO05D010005 2.1e-14 82.4 84 54.8
CDE06G1698 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 3.5e-14 81.6 68 61.8
arahy.Tifrunner.gnm1.ann1.04TBQJ Arachis hypogaea HOM05D008028 ORTHO05D010005 4.6e-14 81.3 69 60.9
EL10Ac9g21688 Beta vulgaris HOM05D008028 ORTHO05D010005 6.0e-14 80.9 80 55.0
PSO541G4922 Papaver somniferum HOM05D008028 ORTHO05D010005 1.0e-13 80.1 76 55.3
CDE03G0367 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 1.3e-13 79.7 68 60.3
Psat5g005320 Pisum sativum HOM05D008028 ORTHO05D010005 2.3e-13 79.0 83 51.8
BcaNung01280 Brassica carinata HOM05D008028 ORTHO05D010005 2.5e-12 75.5 54 64.8
A01p00220 Brassica napus HOM05D008028 ORTHO05D010005 2.5e-12 75.5 54 64.8
C01p00330 Brassica napus HOM05D008028 ORTHO05D010005 2.5e-12 75.5 54 64.8
BolC1t00039H Brassica oleracea HOM05D008028 ORTHO05D010005 2.5e-12 75.5 54 64.8
BraA01t00029Z Brassica rapa HOM05D008028 ORTHO05D010005 2.5e-12 75.5 54 64.8
CDE06G2835 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 2.5e-12 75.5 69 58.0
vmacro17456 Vaccinium macrocarpon HOM05D008028 ORTHO05D010005 2.5e-12 75.5 83 55.4
PSO675G1135 Papaver somniferum HOM05D008028 ORTHO05D010005 5.6e-12 74.3 81 51.9
AUR62011282 Chenopodium quinoa HOM05D008028 ORTHO05D010005 2.8e-11 72.0 63 60.3
Sp7g36720 Schrenkiella parvula HOM05D008028 ORTHO05D010005 2.8e-11 72.0 54 64.8
Hma1.2p1_2203F.1_g317070 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 1.8e-10 69.3 75 53.3
BcaC01g00281 Brassica carinata HOM05D001347 ORTHO05D001198 2.4e-10 68.9 50 64.0
A08p23830 Brassica napus HOM05D001347 ORTHO05D001198 2.4e-10 68.9 50 64.0
C03p77600 Brassica napus HOM05D001347 ORTHO05D001198 2.4e-10 68.9 50 64.0
BolC3t20017H Brassica oleracea HOM05D001347 ORTHO05D001198 2.4e-10 68.9 50 64.0
BraA08t34335Z Brassica rapa HOM05D001347 ORTHO05D001198 2.4e-10 68.9 50 64.0
Thhalv10027119m.g Eutrema salsugineum HOM05D008028 ORTHO05D010005 2.4e-10 68.9 98 45.9
BcaB03g12242 Brassica carinata HOM05D001347 ORTHO05D001198 3.1e-10 68.6 50 66.0
Hma1.2p1_0851F.1_g228390 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 4.0e-10 68.2 65 56.9
AL7G11040 Arabidopsis lyrata HOM05D008028 ORTHO05D010005 8.9e-10 67.0 50 66.0
Aqoxy5G01545 Aquilegia oxysepala HOM05D008028 ORTHO05D010005 2.9e-08 62.0 76 51.3
Zm00001eb153780 Zea mays HOM05D002019 ORTHO05D010005 2.9e-08 62.0 67 49.3
Os01g0739500 Oryza sativa ssp. japonica HOM05D002019 ORTHO05D010005 3.8e-08 61.6 68 47.1
Carub.0007s0098 Capsella rubella HOM05D008028 ORTHO05D010005 4.9e-08 61.2 39 71.8
TAR622G0329 Trochodendron aralioides HOM05D002019 ORTHO05D002150 4.9e-08 61.2 88 40.9
Zm00001eb293570 Zea mays HOM05D002019 ORTHO05D010005 1.1e-07 60.1 51 52.9
Lalb_Chr23g0265241 Lupinus albus HOM05D008028 ORTHO05D010005 3.2e-07 58.5 87 42.5
CiPaw.03G078600 Carya illinoinensis HOM05D002019 ORTHO05D002150 5.4e-07 57.8 87 42.5
Zm00001eb353580 Zea mays HOM05D002019 ORTHO05D010005 5.4e-07 57.8 43 62.8
DCAR_014138 Daucus carota HOM05D002019 ORTHO05D002150 7.1e-07 57.4 60 51.7
Os05g0524100 Oryza sativa ssp. japonica HOM05D002019 ORTHO05D010005 7.1e-07 57.4 43 62.8
TAR629G3490 Trochodendron aralioides HOM05D002019 ORTHO05D002150 7.1e-07 57.4 89 39.3
Actinidia17154 Actinidia chinensis HOM05D002019 ORTHO05D002150 9.3e-07 57.0 56 51.8
MSTRG.15624 Avicennia marina HOM05D002019 ORTHO05D002150 9.3e-07 57.0 90 41.1
Atru.chr1.3547 Acer truncatum HOM05D002019 ORTHO05D002150 1.2e-06 56.6 58 50.0
Dinv36721 Davidia involucrata HOM05D002019 ORTHO05D002150 1.2e-06 56.6 58 51.7
Actinidia40403 Actinidia chinensis HOM05D002019 ORTHO05D002150 1.6e-06 56.2 56 51.8
Dinv19090 Davidia involucrata HOM05D002019 ORTHO05D002150 2.1e-06 55.8 50 54.0
Lj4P371T13 Lonicera japonica HOM05D002019 ORTHO05D002150 2.7e-06 55.5 73 41.1
SEGI_32080 Sequoiadendron giganteum HOM05D002019 ORTHO05D002150 2.7e-06 55.5 89 37.1
GSVIVG01035279001 Vitis vinifera HOM05D002019 ORTHO05D002150 2.7e-06 55.5 49 59.2
CSS0034970 Camellia sinensis var. sinensis HOM05D002019 ORTHO05D002150 4.6e-06 54.7 50 54.0
Dinv42258 Davidia involucrata HOM05D002019 ORTHO05D002150 4.6e-06 54.7 58 50.0
Medtr1g045430 Medicago truncatula HOM05D004099 ORTHO05D004777 4.6e-06 54.7 65 44.6
TAR383G0675 Trochodendron aralioides HOM05D002019 ORTHO05D002150 4.6e-06 54.7 51 51.0
Ah.09g230520 Amaranthus hybridus HOM05D002019 ORTHO05D002150 6.0e-06 54.3 60 48.3
Cfa007741 Carpinus fangiana HOM05D002019 ORTHO05D002150 6.0e-06 54.3 85 41.2
Psat5g145360 Pisum sativum HOM05D002019 ORTHO05D002150 6.0e-06 54.3 59 52.5
HPP92_017131 Vanilla planifolia HOM05D004099 ORTHO05D004777 6.0e-06 54.3 89 39.3
Atru.chr1.1979 Acer truncatum HOM05D002019 ORTHO05D002150 7.8e-06 53.9 50 52.0


User provided reference genes

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