Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G090678 Manihot esculenta HOM05D034836 ORTHO05D013281 4.3e-112 407.9 193 100.0
Nn1g00575 Nelumbo nucifera HOM05D034836 ORTHO05D013281 2.8e-34 149.4 94 71.3
CSS0007557 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.7e-29 132.9 196 38.8
Nn4g25633 Nelumbo nucifera HOM05D034836 ORTHO05D013281 8.6e-28 127.9 92 65.2
CSS0049798 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 5.8e-24 115.2 152 42.1
Nn2g12379 Nelumbo nucifera HOM05D000004 ORTHO05D000002 7.0e-22 108.2 150 38.7
QL02p059512 Quercus lobata HOM05D000004 ORTHO05D000002 9.5e-19 97.8 155 32.9
COL.COLO4_33476 Corchorus olitorius HOM05D000004 ORTHO05D000002 1.6e-18 97.1 181 33.7
Manes.11G082735 Manihot esculenta HOM05D000004 ORTHO05D000002 3.6e-18 95.9 190 31.6
Sabra09G0078600 Salix brachista HOM05D000004 ORTHO05D000002 5.2e-17 92.0 195 27.7
Sabra10G0166600 Salix brachista HOM05D000004 ORTHO05D000002 5.2e-17 92.0 195 27.7
Manes.06G033812 Manihot esculenta HOM05D000004 ORTHO05D000002 6.8e-17 91.7 155 35.5
QL12p011078 Quercus lobata HOM05D000432 ORTHO05D000002 1.2e-16 90.9 176 31.2
Manes.17G118357 Manihot esculenta HOM05D000004 ORTHO05D000002 2.0e-16 90.1 155 36.1
Nn2g12383 Nelumbo nucifera HOM05D000004 ORTHO05D000002 2.0e-16 90.1 84 59.5
Manes.09G027033 Manihot esculenta HOM05D000004 ORTHO05D000002 4.4e-16 89.0 172 32.0
Sabra19G0002000 Salix brachista HOM05D000004 ORTHO05D000002 4.4e-16 89.0 187 28.3
Atru.chr11.883 Acer truncatum HOM05D000004 ORTHO05D000002 5.8e-16 88.6 146 37.0
CAN.G824.35 Capsicum annuum HOM05D000004 ORTHO05D000002 5.8e-16 88.6 167 32.9
CAN.G845.6 Capsicum annuum HOM05D000004 ORTHO05D000002 5.8e-16 88.6 167 32.9
QL10p043279 Quercus lobata HOM05D000004 ORTHO05D000002 5.8e-16 88.6 192 27.6
Atru.chr2.2548 Acer truncatum HOM05D003506 ORTHO05D004063 7.5e-16 88.2 148 36.5
QL01p053992 Quercus lobata HOM05D000004 ORTHO05D000002 7.5e-16 88.2 159 34.0
QL04p085052 Quercus lobata HOM05D000004 ORTHO05D000002 7.5e-16 88.2 159 34.0
QL08p043961 Quercus lobata HOM05D000004 ORTHO05D000002 7.5e-16 88.2 159 34.0
TPR.G6317 Trifolium pratense HOM05D000004 ORTHO05D000002 9.8e-16 87.8 152 34.2
Manes.12G088990 Manihot esculenta HOM05D000004 ORTHO05D000002 1.3e-15 87.4 155 34.2
QL10p040115 Quercus lobata HOM05D000004 ORTHO05D000002 1.3e-15 87.4 155 31.0
Manes.17G007266 Manihot esculenta HOM05D000004 ORTHO05D000002 2.2e-15 86.7 155 34.2
TPR.G7895 Trifolium pratense HOM05D000004 ORTHO05D000048 2.9e-15 86.3 176 33.0
Atru.chr2.1912 Acer truncatum HOM05D000004 ORTHO05D000002 3.7e-15 85.9 149 37.6
Atru.chr4.870 Acer truncatum HOM05D000004 ORTHO05D000002 3.7e-15 85.9 150 34.7
Manes.11G130716 Manihot esculenta HOM05D000004 ORTHO05D000002 4.9e-15 85.5 191 29.8
Manes.17G016004 Manihot esculenta HOM05D000004 ORTHO05D000002 4.9e-15 85.5 155 34.2
Sabra10G0044500 Salix brachista HOM05D000075 ORTHO05D000002 4.9e-15 85.5 164 29.3
QL05p032758 Quercus lobata HOM05D000004 ORTHO05D000002 6.4e-15 85.1 156 32.1
Manes.03G138751 Manihot esculenta HOM05D000004 ORTHO05D000002 1.9e-14 83.6 192 30.7
SHI24712 Sapria himalayana HOM05D000004 ORTHO05D000002 1.9e-14 83.6 203 30.0
SHI48351 Sapria himalayana HOM05D000004 ORTHO05D000002 1.9e-14 83.6 190 31.1
Sabra06G0095200 Salix brachista HOM05D002585 ORTHO05D002917 2.4e-14 83.2 157 28.7
PSO063G0403 Papaver somniferum HOM05D000004 ORTHO05D000002 4.1e-14 82.4 138 31.9
Atru.chr1.2388 Acer truncatum HOM05D000004 ORTHO05D000002 5.4e-14 82.0 152 30.3
BolC4t24363H Brassica oleracea HOM05D000050 ORTHO05D000771 5.4e-14 82.0 175 29.7
Sabra07G0076600 Salix brachista HOM05D000004 ORTHO05D000002 9.2e-14 81.3 181 27.6
Atru.chr6.521 Acer truncatum HOM05D000004 ORTHO05D000002 1.6e-13 80.5 135 37.0
Manes.08G059801 Manihot esculenta HOM05D000004 ORTHO05D000002 2.1e-13 80.1 155 31.6
ECA232G1984 Erigeron canadensis HOM05D000004 ORTHO05D000002 6.0e-13 78.6 152 31.6
Sabra13G0065800 Salix brachista HOM05D004645 ORTHO05D005693 1.7e-12 77.0 195 25.6
ECA236G3521 Erigeron canadensis HOM05D000004 ORTHO05D000002 3.0e-12 76.3 153 30.7
ECA240G3042 Erigeron canadensis HOM05D000004 ORTHO05D000002 3.0e-12 76.3 153 30.7
Lalb_Chr06g0168691 Lupinus albus HOM05D000004 ORTHO05D000002 3.9e-12 75.9 152 30.3
Nn6g31876 Nelumbo nucifera HOM05D000004 ORTHO05D000002 3.9e-12 75.9 167 27.5
TWI09G0741 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 3.9e-12 75.9 167 29.3
PSO478G3301 Papaver somniferum HOM05D000004 ORTHO05D000002 5.1e-12 75.5 154 29.9
TWI36G1188 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 6.6e-12 75.1 148 27.7
Psat7g017240 Pisum sativum HOM05D000004 ORTHO05D000002 8.6e-12 74.7 153 35.3
PSO675G0046 Papaver somniferum HOM05D000004 ORTHO05D000002 1.1e-11 74.3 147 30.6
TAR351G0002 Trochodendron aralioides HOM05D000004 ORTHO05D000002 1.1e-11 74.3 113 40.7
COL.COLO4_12322 Corchorus olitorius HOM05D015139 ORTHO05D013281 1.5e-11 73.9 96 39.6
Psat5g099160 Pisum sativum HOM05D000004 ORTHO05D000002 2.5e-11 73.2 153 35.3
PSO478G1420 Papaver somniferum HOM05D000004 ORTHO05D000002 3.3e-11 72.8 170 28.2
Psat2g059760 Pisum sativum HOM05D000004 ORTHO05D000002 4.3e-11 72.4 153 32.7
TWI39G0003 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 5.6e-11 72.0 153 32.0
ECA246G0443 Erigeron canadensis HOM05D000004 ORTHO05D000002 7.3e-11 71.6 152 30.3
Oeu015199.1 Olea europaea HOM05D000004 ORTHO05D000002 7.3e-11 71.6 154 28.6
Cpa.g.sc2.254 Carica papaya HOM05D000004 ORTHO05D000002 9.5e-11 71.2 92 43.5
ECA234G2434 Erigeron canadensis HOM05D000004 ORTHO05D000002 9.5e-11 71.2 152 30.3
ECA247G3996 Erigeron canadensis HOM05D000004 ORTHO05D000002 9.5e-11 71.2 152 30.3
Phvul.004G050550 Phaseolus vulgaris HOM05D000004 ORTHO05D000002 9.5e-11 71.2 167 30.5
Sabra16G0137300 Salix brachista HOM05D000004 ORTHO05D000002 9.5e-11 71.2 137 27.0
Actinidia13475 Actinidia chinensis HOM05D000004 ORTHO05D000002 1.2e-10 70.9 148 29.7
Hma1.2p1_0540F.1_g174670 Hydrangea macrophylla HOM05D000004 ORTHO05D000002 1.2e-10 70.9 151 29.1
SHI02827 Sapria himalayana HOM05D000004 ORTHO05D000002 1.2e-10 70.9 158 30.4
TWI77G0663 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 1.2e-10 70.9 155 25.8
ECA246G3805 Erigeron canadensis HOM05D000004 ORTHO05D000002 2.1e-10 70.1 152 30.3
CSS0005910 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.8e-10 69.7 148 29.1
Atru.chr6.164 Acer truncatum HOM05D000544 ORTHO05D000002 4.7e-10 68.9 153 25.5
CiPaw.09G207300 Carya illinoinensis HOM05D000004 ORTHO05D000002 4.7e-10 68.9 150 30.0
SHI27944 Sapria himalayana HOM05D034591 ORTHO05D013281 4.7e-10 68.9 54 51.9
TWI60G0240 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 4.7e-10 68.9 152 25.7
TAR643G0001 Trochodendron aralioides HOM05D000004 ORTHO05D000002 6.2e-10 68.6 110 30.0
ECA233G5755 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.1e-09 67.8 153 29.4
COL.COLO4_22673 Corchorus olitorius HOM05D000004 ORTHO05D000002 1.8e-09 67.0 152 28.9
vmacro19668 Vaccinium macrocarpon HOM05D000792 ORTHO05D004195 1.8e-09 67.0 137 28.5
COL.COLO4_20628 Corchorus olitorius HOM05D000004 ORTHO05D000002 2.3e-09 66.6 152 29.6
PSO170G5011 Papaver somniferum HOM05D000004 ORTHO05D000002 2.3e-09 66.6 137 29.2
SpUn0005_0210 Schrenkiella parvula HOM05D000004 ORTHO05D000002 2.3e-09 66.6 77 45.5
PSO675G9204 Papaver somniferum HOM05D000004 ORTHO05D000002 4.0e-09 65.9 151 29.1
PSO675G1874 Papaver somniferum HOM05D000004 ORTHO05D000002 5.2e-09 65.5 112 36.6
Cpa.g.sc448.2 Carica papaya HOM05D008870 ORTHO05D010906 6.8e-09 65.1 138 31.9
Manes.02G178250 Manihot esculenta HOM05D000004 ORTHO05D013281 6.8e-09 65.1 85 40.0
PSO478G0834 Papaver somniferum HOM05D000004 ORTHO05D000002 6.8e-09 65.1 143 28.0
Psat0s3433g0040 Pisum sativum HOM05D000004 ORTHO05D000002 8.9e-09 64.7 153 32.7
Nn5g31040 Nelumbo nucifera HOM05D000004 ORTHO05D000002 1.2e-08 64.3 149 26.8
RcHm_v2.0_Chr5g0078031 Rosa chinensis HOM05D000004 ORTHO05D000002 1.5e-08 63.9 152 29.6
TWI56G0901 Tripterygium wilfordii HOM05D000004 ORTHO05D000048 1.5e-08 63.9 161 29.8
ECA233G4222 Erigeron canadensis HOM05D000004 ORTHO05D000002 2.0e-08 63.5 156 30.1
Manes.10G083422 Manihot esculenta HOM05D000004 ORTHO05D013281 2.0e-08 63.5 59 45.8
PSO170G3746 Papaver somniferum HOM05D000004 ORTHO05D000002 2.6e-08 63.2 83 33.7
TWI31G1488 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 2.6e-08 63.2 85 34.1
TWI34G0287 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 2.6e-08 63.2 85 34.1
TWI38G0029 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 2.6e-08 63.2 85 34.1
TWI81G0785 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 2.6e-08 63.2 85 34.1
Cpa.g.sc18.30 Carica papaya HOM05D008870 ORTHO05D010906 3.4e-08 62.8 60 43.3
ECA232G3463 Erigeron canadensis HOM05D000924 ORTHO05D001209 3.4e-08 62.8 148 27.7
ECA246G2187 Erigeron canadensis HOM05D000004 ORTHO05D000002 4.4e-08 62.4 165 27.9
Hma1.2p1_0812F.1_g222280 Hydrangea macrophylla HOM05D000004 ORTHO05D000002 4.4e-08 62.4 94 35.1
Nn1g06168 Nelumbo nucifera HOM05D034591 ORTHO05D013281 4.4e-08 62.4 54 46.3
SHI33292 Sapria himalayana HOM05D000004 ORTHO05D000002 4.4e-08 62.4 96 38.5
CSS0032753 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 5.8e-08 62.0 151 29.1
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 9.9e-08 61.2 70 32.9
Nn6g33994 Nelumbo nucifera HOM05D000004 ORTHO05D000002 1.3e-07 60.8 111 36.0
PSO541G3547 Papaver somniferum HOM05D000004 ORTHO05D000002 1.3e-07 60.8 148 27.0
PSO160G0001 Papaver somniferum HOM05D000004 ORTHO05D000002 1.7e-07 60.5 153 28.8
PSO339G1491 Papaver somniferum HOM05D000004 ORTHO05D000002 1.7e-07 60.5 151 26.5
PSO754G0085 Papaver somniferum HOM05D000004 ORTHO05D000002 1.7e-07 60.5 153 28.8
PSO832G0807 Papaver somniferum HOM05D000004 ORTHO05D000002 1.7e-07 60.5 107 34.6
Manes.01G065550 Manihot esculenta HOM05D008870 ORTHO05D010906 2.9e-07 59.7 90 32.2
Os04g0191000 Oryza sativa ssp. japonica HOM05D000004 ORTHO05D000002 3.7e-07 59.3 152 27.0
Nn2g14946 Nelumbo nucifera HOM05D067151 ORTHO05D000002 4.9e-07 58.9 105 29.5
PSO170G4176 Papaver somniferum HOM05D000004 ORTHO05D000002 4.9e-07 58.9 164 28.7
Cpa.g.sc79.23 Carica papaya HOM05D008870 ORTHO05D010906 6.4e-07 58.5 102 34.3
Nn1g03780 Nelumbo nucifera HOM05D000004 ORTHO05D000002 6.4e-07 58.5 196 27.6
Nn5g27771 Nelumbo nucifera HOM05D000004 ORTHO05D000002 1.1e-06 57.8 81 33.3
PSO675G0192 Papaver somniferum HOM05D000004 ORTHO05D000002 1.1e-06 57.8 79 36.7
SHI48738 Sapria himalayana HOM05D000004 ORTHO05D000002 1.1e-06 57.8 89 36.0
SHI21418 Sapria himalayana HOM05D025262 ORTHO05D000002 1.9e-06 57.0 80 31.2
Sopen08g016280 Solanum pennellii HOM05D000004 ORTHO05D000002 1.9e-06 57.0 154 26.0
Psat3g025360 Pisum sativum HOM05D000004 ORTHO05D000002 2.4e-06 56.6 117 35.9
PSO675G5638 Papaver somniferum HOM05D000004 ORTHO05D000002 3.2e-06 56.2 154 27.3
PGSC0003DMG400001170 Solanum tuberosum HOM05D015139 ORTHO05D013281 4.1e-06 55.8 49 42.9
Rhsim13G0163600 Rhododendron simsii HOM05D000004 ORTHO05D000224 5.4e-06 55.5 147 30.6
Atru.chr2.2472 Acer truncatum HOM05D000004 ORTHO05D000002 7.1e-06 55.1 52 48.1
ECA232G0168 Erigeron canadensis HOM05D000004 ORTHO05D000002 7.1e-06 55.1 171 26.9
FvH4_4g06573 Fragaria vesca HOM05D000004 ORTHO05D000002 7.1e-06 55.1 152 26.3
Sopen07g005380 Solanum pennellii HOM05D000004 ORTHO05D000048 7.1e-06 55.1 152 25.7
Cpa.g.sc112.15 Carica papaya HOM05D000004 ORTHO05D000002 9.2e-06 54.7 139 28.1
Nn1g00297 Nelumbo nucifera HOM05D000004 ORTHO05D000002 9.2e-06 54.7 100 27.0
Nn5g28532 Nelumbo nucifera HOM05D000004 ORTHO05D000002 9.2e-06 54.7 40 70.0


User provided reference genes

Program Settings