Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 0.0e+00 1712.2 1106 100.0
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 0.0e+00 1687.9 1106 99.4
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 3.1e-239 832.8 1156 54.6
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 1.2e-235 820.8 1151 59.9
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 3.6e-227 792.7 1118 60.2
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 1.8e-218 763.8 1120 58.7
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 4.5e-214 749.2 1084 59.7
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 1.2e-211 741.1 1158 55.4
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 1.8e-207 727.2 1073 59.1
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 6.5e-205 718.8 1116 57.3
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 7.0e-199 698.7 1197 53.4
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 2.1e-195 687.2 1129 54.7
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 2.6e-193 680.2 1129 55.7
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 3.4e-193 679.9 1197 52.5
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 1.1e-191 674.9 1108 56.4
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 5.4e-191 672.5 1180 52.8
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 2.8e-184 650.2 1134 53.9
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 1.0e-181 641.7 1106 55.3
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 1.7e-181 641.0 1123 54.4
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 5.6e-180 636.0 1120 55.9
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 1.6e-179 634.4 1120 55.9
Dinv41983 Davidia involucrata HOM05D005996 ORTHO05D007507 1.0e-178 631.7 1062 56.8
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 3.4e-177 626.7 1136 54.3
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 1.3e-176 624.8 1138 48.5
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 1.3e-176 624.8 1133 50.0
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 2.2e-176 624.0 1116 55.5
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 1.1e-175 621.7 1033 57.9
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 6.6e-173 612.5 1114 54.3
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 1.5e-172 611.3 1095 54.5
Sed0023130 Sechium edule HOM05D005996 ORTHO05D007507 3.3e-172 610.1 1086 53.3
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 1.3e-168 598.2 1112 52.7
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 7.8e-166 589.0 1114 52.7
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.5e-164 584.7 1112 52.2
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 4.3e-164 583.2 1116 52.3
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 8.1e-163 578.9 1140 51.0
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 1.4e-162 578.2 1137 50.7
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 1.8e-162 577.8 1129 51.9
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 8.9e-162 575.5 1135 50.2
Atru.chr5.3202 Acer truncatum HOM05D005996 ORTHO05D007507 5.8e-161 572.8 1148 53.4
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 8.3e-160 568.9 1138 51.1
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 1.3e-157 561.6 1168 50.1
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 1.5e-156 558.1 1131 51.8
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 7.6e-153 545.8 1192 48.1
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 1.7e-152 544.7 1145 51.4
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 2.9e-152 543.9 1193 48.0
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 1.4e-151 541.6 1127 50.4
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 4.2e-151 540.0 960 49.7
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 5.4e-151 539.7 1130 50.5
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 7.1e-151 539.3 1125 53.1
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 6.6e-149 532.7 1144 49.9
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 1.5e-148 531.6 1111 51.1
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 2.8e-147 527.3 1132 49.5
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 6.2e-147 526.2 1116 50.0
Medtr4g072990 Medicago truncatula HOM05D005996 ORTHO05D007507 8.1e-147 525.8 1134 50.2
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 1.4e-146 525.0 1147 50.4
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 1.5e-145 521.5 1120 50.4
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 2.6e-145 520.8 1078 51.4
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 3.8e-144 516.9 897 54.3
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 4.2e-143 513.5 1132 49.2
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 9.3e-143 512.3 1116 50.1
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 4.6e-142 510.0 1091 50.0
TPR.G39263 Trifolium pratense HOM05D005996 ORTHO05D007507 1.3e-141 508.4 1146 48.7
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 2.8e-139 500.7 1112 50.9
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 8.1e-139 499.2 1115 49.6
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 3.1e-138 497.3 1160 48.6
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 3.1e-138 497.3 1111 49.9
Lj3g0021328 Lotus japonicus HOM05D005996 ORTHO05D007507 3.1e-138 497.3 1111 49.6
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 1.2e-137 495.4 1119 49.8
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 2.0e-137 494.6 723 65.6
Psat7g180560 Pisum sativum HOM05D005996 ORTHO05D007507 7.1e-135 486.1 1123 49.2
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 1.3e-133 481.9 1153 49.6
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 6.7e-133 479.6 928 51.9
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 6.7e-133 479.6 1124 47.7
Lj5C186G10 Lonicera japonica HOM05D005996 ORTHO05D007507 1.1e-132 478.8 1100 50.0
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 2.5e-132 477.6 1166 49.3
Lalb_Chr01g0001941 Lupinus albus HOM05D005996 ORTHO05D007507 1.3e-131 475.3 836 59.2
THA.LOC104807280 Tarenaya hassleriana HOM05D005996 ORTHO05D007507 3.1e-130 470.7 1125 49.2
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 4.0e-130 470.3 505 68.9
Thhalv10024275m.g Eutrema salsugineum HOM05D005996 ORTHO05D007507 6.9e-130 469.5 1108 49.9
A01p03690 Brassica napus HOM05D005996 ORTHO05D007507 1.1e-127 462.2 1142 47.5
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 1.8e-125 454.9 1104 48.6
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 2.5e-124 451.1 869 51.1
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 5.6e-124 449.9 1159 47.1
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 4.0e-122 443.7 1145 47.0
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 9.0e-122 442.6 1187 46.8
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 1.3e-120 438.7 858 56.9
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 2.2e-120 438.0 1159 46.7
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 2.9e-120 437.6 918 52.4
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 3.2e-119 434.1 753 61.1
Nitab4.5_0000980g0320 Nicotiana tabacum HOM05D005996 ORTHO05D007507 7.1e-119 433.0 1125 46.7
HanXRQChr10g0296321 Helianthus annuus HOM05D005996 ORTHO05D007507 1.1e-114 419.1 1077 48.7
Carub.0007s0547 Capsella rubella HOM05D005996 ORTHO05D007507 3.8e-112 410.6 932 52.3
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 3.2e-111 407.5 797 52.3
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 3.6e-102 377.5 717 50.2
TAR628G0048 Trochodendron aralioides HOM05D005996 ORTHO05D007507 6.1e-102 376.7 731 52.9
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 3.1e-98 364.4 1032 48.9
BcaNung04307 Brassica carinata HOM05D005996 ORTHO05D007507 8.8e-77 293.1 269 56.9
CDE09G0530 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 6.1e-62 243.8 336 73.2
TWI75G0933 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 4.0e-61 241.1 255 54.9
AUR62016883 Chenopodium quinoa HOM05D005996 ORTHO05D007507 5.2e-61 240.7 721 45.4
Hma1.2p1_0032F.1_g019730 Hydrangea macrophylla HOM05D005996 ORTHO05D007507 2.3e-56 225.3 288 82.3
TAR628G0092 Trochodendron aralioides HOM05D005996 ORTHO05D007507 3.6e-54 218.0 172 65.7
CARHR243120 Cardamine hirsuta HOM05D005996 ORTHO05D007507 6.2e-54 217.2 651 47.3
PGSC0003DMG400001599 Solanum tuberosum HOM05D005996 ORTHO05D007507 6.8e-45 187.2 743 42.4
Zm00001eb027100 Zea mays HOM05D005996 ORTHO05D007507 8.9e-45 186.8 306 65.7
AagrBONN_evm.TU.Sc2ySwM_228.2051 Anthoceros agrestis HOM05D005996 ORTHO05D007507 4.4e-44 184.5 704 49.6
Nitab4.5_0000980g0280 Nicotiana tabacum HOM05D005996 ORTHO05D007507 1.5e-39 169.5 130 66.2
ATR0913G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 4.7e-38 164.5 310 71.3
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 8.1e-38 163.7 712 37.8
Pp3c10_19570 Physcomitrium patens HOM05D005996 ORTHO05D007507 7.6e-36 157.1 708 48.0
Pp3c12_14320 Physcomitrium patens HOM05D005996 ORTHO05D007507 3.8e-35 154.8 254 39.0
CDE09G0218 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 1.4e-34 152.9 128 64.1
Mapoly0039s0079 Marchantia polymorpha HOM05D005996 ORTHO05D007507 4.6e-33 147.9 975 40.9
CDE09G0259 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 3.3e-31 141.7 177 46.3
ATR0074G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 2.1e-30 139.0 107 63.6
MBI09_g44523_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 3.6e-30 138.3 138 52.2
Mapoly0039s0078 Marchantia polymorpha HOM05D005996 ORTHO05D007507 2.6e-28 132.1 1036 38.2
SEGI_22573 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 3.9e-24 118.2 117 53.0
CBR_g66762 Chara braunii HOM05D005996 ORTHO05D007507 1.1e-23 116.7 302 30.1
Pp3c7_22430 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.6e-22 112.8 684 42.0
SMO240G0032 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 5.8e-20 104.4 94 51.1
CDE09G0717 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 5.4e-18 97.8 99 72.7
SMO106G0001 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 4.2e-10 71.6 75 46.7
Ciclev10028828m.g Citrus clementina HOM05D005996 ORTHO05D007507 9.3e-10 70.5 355 31.3
MCO09G858 Micromonas commoda HOM05D005996 ORTHO05D007507 1.2e-09 70.1 243 28.0
SEGI_25615 Sequoiadendron giganteum HOM05D006258 ORTHO05D007961 1.1e-07 63.5 111 29.7
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 3.3e-07 62.0 109 28.4
QL11p047023 Quercus lobata HOM05D005996 ORTHO05D007507 3.3e-07 62.0 131 37.4
SMO286G0011 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 9.6e-07 60.5 59 50.8
SEGI_16644 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 1.3e-06 60.1 41 65.9
SMO301G0041 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 1.6e-06 59.7 80 41.2
SMO245G0010 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 3.7e-06 58.5 75 44.0
SMO245G0001 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 6.2e-06 57.8 59 50.8


User provided reference genes

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