Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 0.0e+00 1723.8 942 100.0
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 1.7e-124 451.4 1019 37.9
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 3.7e-116 423.7 1030 37.1
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 1.9e-104 384.8 785 38.3
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 1.2e-101 375.6 998 34.6
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 4.8e-100 370.2 938 35.8
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 8.3e-100 369.4 798 40.2
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 2.3e-94 351.3 776 38.0
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 3.5e-90 337.4 716 38.4
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 1.5e-88 332.0 802 35.4
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 4.3e-88 330.5 797 36.0
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 4.3e-88 330.5 762 36.2
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 3.7e-84 317.4 766 36.6
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 3.5e-82 310.8 754 36.3
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 7.8e-82 309.7 719 37.0
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 2.5e-80 304.7 717 35.3
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 4.3e-80 303.9 711 35.4
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 3.6e-79 300.8 741 36.7
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 1.8e-78 298.5 640 38.0
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 4.0e-78 297.4 787 35.2
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 4.0e-78 297.4 739 36.1
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 8.9e-78 296.2 776 33.6
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 2.7e-74 284.6 746 34.7
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 4.6e-74 283.9 719 35.7
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 8.6e-73 279.6 748 34.2
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 2.8e-71 274.6 772 32.8
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 3.6e-71 274.2 822 32.7
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.2e-69 269.2 702 36.3
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 2.0e-69 268.5 736 32.9
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 2.6e-69 268.1 731 35.2
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 4.4e-69 267.3 723 35.0
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 1.3e-68 265.8 720 35.7
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 2.2e-68 265.0 782 33.1
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 1.3e-65 255.8 890 30.3
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 5.1e-65 253.8 725 34.2
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.9e-64 251.9 712 32.7
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 4.7e-63 247.3 785 31.6
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 6.2e-63 246.9 561 35.8
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.4e-61 241.1 705 34.5
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 7.6e-61 240.0 596 35.9
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 1.4e-59 235.7 764 31.0
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 3.2e-59 234.6 581 34.8
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 4.1e-59 234.2 862 30.6
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 2.1e-58 231.9 784 30.9
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 1.0e-57 229.6 763 31.5
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 1.5e-56 225.7 744 34.9
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 2.5e-56 224.9 726 32.5
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.5e-56 224.9 739 32.5
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 3.3e-56 224.6 716 33.2
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 7.3e-56 223.4 713 32.8
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.2e-55 222.6 722 32.8
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 3.6e-55 221.1 626 32.4
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 3.1e-54 218.0 922 28.1
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 4.0e-54 217.6 328 45.7
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 4.4e-53 214.2 413 42.1
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 4.2e-51 207.6 621 35.3
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 3.5e-50 204.5 403 41.4
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 2.3e-49 201.8 692 31.5
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 2.3e-49 201.8 940 31.3
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 2.5e-48 198.4 764 30.6
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 2.8e-47 194.9 744 29.8
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 6.2e-47 193.7 959 26.6
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 8.1e-47 193.4 251 45.4
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 7.6e-45 186.8 361 42.7
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 7.6e-45 186.8 408 36.0
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 2.9e-44 184.9 844 31.5
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 8.4e-44 183.3 496 34.5
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 1.4e-43 182.6 768 27.9
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 2.4e-43 181.8 598 34.1
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 7.1e-43 180.3 585 29.9
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 3.5e-42 177.9 705 29.1
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 4.6e-42 177.6 160 60.0
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 7.9e-42 176.8 468 35.9
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 1.5e-40 172.6 627 29.7
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 4.3e-40 171.0 726 28.7
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 7.4e-40 170.2 614 31.6
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 7.4e-40 170.2 554 30.1
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 2.8e-39 168.3 745 30.5
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 4.8e-39 167.5 348 37.4
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 4.8e-39 167.5 339 40.4
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 6.2e-39 167.2 756 29.2
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 1.1e-38 166.4 819 28.4
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 4.0e-38 164.5 264 39.0
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 5.3e-38 164.1 554 30.3
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 1.3e-36 159.5 696 27.2
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 2.2e-36 158.7 477 33.1
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 2.9e-36 158.3 406 35.7
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 1.4e-35 156.0 145 57.9
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 3.2e-35 154.8 687 30.7
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 5.5e-35 154.1 461 32.8
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 1.6e-34 152.5 697 27.0
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 1.6e-34 152.5 829 28.5
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.3e-33 149.4 311 37.0
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 3.0e-33 148.3 359 35.1
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 2.5e-32 145.2 268 38.1
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 8.2e-31 140.2 444 32.4
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 1.8e-30 139.0 451 31.9
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 4.0e-30 137.9 271 36.2
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 5.3e-30 137.5 308 35.4
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 9.0e-30 136.7 279 40.1
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 1.5e-29 136.0 266 40.6
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 2.6e-29 135.2 264 40.2
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 2.6e-29 135.2 229 41.0
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.0e-28 133.3 171 45.6
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 1.0e-28 133.3 227 38.8
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 2.2e-28 132.1 259 36.3
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 2.9e-28 131.7 279 37.3
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 2.9e-28 131.7 279 37.3
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 3.8e-28 131.3 458 32.1
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 3.8e-28 131.3 280 35.0
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 4.9e-28 131.0 194 42.3
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 6.5e-28 130.6 216 38.4
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.5e-27 128.6 469 30.9
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 7.1e-27 127.1 258 35.3
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 1.2e-26 126.3 236 36.4
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 1.6e-26 125.9 737 24.8
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 4.6e-26 124.4 265 36.2
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 6.0e-26 124.0 234 38.9
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 7.9e-26 123.6 229 38.9
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 7.9e-26 123.6 260 34.6
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 6.7e-25 120.6 204 39.2
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 1.9e-24 119.0 763 27.0
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 1.9e-24 119.0 288 35.1
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 5.7e-24 117.5 217 39.6
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 1.6e-23 115.9 358 33.2
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 2.8e-23 115.2 174 41.4
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 6.3e-23 114.0 617 28.4
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 1.1e-22 113.2 171 42.7
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 1.8e-22 112.5 259 33.6
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 2.4e-22 112.1 137 43.8
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 6.9e-22 110.5 148 38.5
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 2.2e-20 105.5 119 44.5
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 2.2e-20 105.5 119 44.5
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 1.9e-19 102.4 227 33.0
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 4.2e-19 101.3 457 28.0
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 1.6e-18 99.4 182 35.7
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 4.6e-18 97.8 370 28.6
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 7.9e-18 97.1 119 46.2
Atru.chr5.3066 Acer truncatum HOM05D003739 ORTHO05D003996 1.8e-17 95.9 219 36.5
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.8e-17 95.9 61 70.5
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 2.0e-16 92.4 157 34.4
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 9.7e-16 90.1 93 41.9
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 2.8e-15 88.6 56 80.4
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.4e-14 86.3 230 29.6
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 1.8e-14 85.9 449 25.8
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 3.1e-14 85.1 163 37.4
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 6.9e-14 84.0 108 40.7
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 4.5e-13 81.3 253 27.3
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 1.9e-11 75.9 105 33.3
Sc19g0000570 Simmondsia chinensis HOM05D003739 ORTHO05D003996 1.9e-11 75.9 584 25.0
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 3.2e-11 75.1 537 24.6
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 9.4e-11 73.6 173 32.9
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 3.9e-09 68.2 55 58.2
SMO293G0020 Selaginella moellendorffii HOM05D027797 ORTHO05D003996 3.9e-09 68.2 90 43.3
Glyma.16G093750 Glycine max HOM05D003739 ORTHO05D003996 1.5e-08 66.2 99 42.4
FAN24G0282 Fragaria x ananassa HOM05D003739 ORTHO05D003996 7.4e-08 63.9 83 47.0
Hma1.2p1_0088F.1_g045220 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 5.3e-06 57.8 52 57.7
Actinidia05492 Actinidia chinensis HOM05D003739 ORTHO05D003996 9.1e-06 57.0 90 41.1
Cfa024558 Carpinus fangiana HOM05D003739 ORTHO05D003996 9.1e-06 57.0 54 48.1
FAN20G1594 Fragaria x ananassa HOM05D003739 ORTHO05D003996 9.1e-06 57.0 92 41.3


User provided reference genes

Program Settings