Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G082969 Manihot esculenta HOM05D034492 ORTHO05D250068 2.7e-76 288.5 138 100.0
Manes.05G197350 Manihot esculenta HOM05D034492 ORTHO05D250430 5.3e-72 274.2 131 100.0
Manes.11G092040 Manihot esculenta HOM05D034492 ORTHO05D250890 1.1e-40 170.2 84 98.8
Manes.01G238000 Manihot esculenta HOM05D002523 ORTHO05D002951 3.0e-14 82.4 37 100.0
PSO063G7333 Papaver somniferum HOM05D002523 ORTHO05D002951 3.4e-10 68.9 71 53.5
PSO782G3313 Papaver somniferum HOM05D002523 ORTHO05D002951 7.5e-10 67.8 71 52.1
Manes.05G005400 Manihot esculenta HOM05D002523 ORTHO05D002951 4.9e-09 65.1 35 82.9
MD01G1230000 Malus domestica HOM05D002523 ORTHO05D002951 6.4e-09 64.7 55 54.5
MD01G1230100 Malus domestica HOM05D002523 ORTHO05D002951 6.4e-09 64.7 55 54.5
FAN01G3084 Fragaria x ananassa HOM05D002523 ORTHO05D002951 9.2e-08 60.8 36 75.0
FAN03G0988 Fragaria x ananassa HOM05D002523 ORTHO05D002951 9.2e-08 60.8 36 75.0
FAN10G1524 Fragaria x ananassa HOM05D002523 ORTHO05D002951 9.2e-08 60.8 36 75.0
FAN10G3000 Fragaria x ananassa HOM05D002523 ORTHO05D002951 9.2e-08 60.8 36 75.0
RcHm_v2.0_Chr1g0383111 Rosa chinensis HOM05D002523 ORTHO05D002951 9.2e-08 60.8 36 75.0
FvH4_7g33080 Fragaria vesca HOM05D002523 ORTHO05D002951 1.6e-07 60.1 36 75.0
Thecc.03G210800 Theobroma cacao HOM05D002523 ORTHO05D002951 1.6e-07 60.1 35 74.3
Haze_00317 Corylus avellana HOM05D002523 ORTHO05D002951 2.1e-07 59.7 55 52.7
SGA_v2.0_scaffold1362G53926 Striga asiatica HOM05D002523 ORTHO05D002951 2.1e-07 59.7 55 50.9
TAR374G1195 Trochodendron aralioides HOM05D002523 ORTHO05D002951 2.1e-07 59.7 36 72.2
Nitab4.5_0000021g0040 Nicotiana tabacum HOM05D002523 ORTHO05D002951 2.7e-07 59.3 36 72.2
Nitab4.5_0010776g0010 Nicotiana tabacum HOM05D002523 ORTHO05D002951 2.7e-07 59.3 36 72.2
TAR375G0808 Trochodendron aralioides HOM05D002523 ORTHO05D002951 2.7e-07 59.3 36 72.2
MSTRG.8598 Avicennia marina HOM05D002523 ORTHO05D002951 3.5e-07 58.9 55 49.1
Solyc03g080080.4 Solanum lycopersicum HOM05D002523 ORTHO05D002951 3.5e-07 58.9 36 72.2
Sopen03g021810 Solanum pennellii HOM05D002523 ORTHO05D002951 3.5e-07 58.9 36 72.2
PGSC0003DMG401000554 Solanum tuberosum HOM05D002523 ORTHO05D002951 3.5e-07 58.9 36 72.2
MELO3C024866.2 Cucumis melo HOM05D002523 ORTHO05D002951 4.6e-07 58.5 36 72.2
Peaxi162Scf00542g00038 Petunia axillaris HOM05D002523 ORTHO05D002951 4.6e-07 58.5 36 72.2
Cpa.g.sc3.171 Carica papaya HOM05D002523 ORTHO05D002951 6.0e-07 58.2 55 50.9
Cfa016142 Carpinus fangiana HOM05D002523 ORTHO05D002951 6.0e-07 58.2 55 50.9
Atru.chr5.802 Acer truncatum HOM05D002523 ORTHO05D002951 7.8e-07 57.8 77 42.9
Nn3g18758 Nelumbo nucifera HOM05D002523 ORTHO05D002951 7.8e-07 57.8 43 62.8
Peaxi162Scf01447g00022 Petunia axillaris HOM05D002523 ORTHO05D002951 7.8e-07 57.8 36 69.4
Cc02_g00690 Coffea canephora HOM05D002523 ORTHO05D002951 1.0e-06 57.4 62 46.8
Gohir.D04G000010 Gossypium hirsutum HOM05D002523 ORTHO05D002951 1.0e-06 57.4 35 74.3
Gohir.D04G000600 Gossypium hirsutum HOM05D002523 ORTHO05D002951 1.0e-06 57.4 35 74.3
Gorai.012G001600 Gossypium raimondii HOM05D002523 ORTHO05D002951 1.0e-06 57.4 35 74.3
Oeu029331.1 Olea europaea HOM05D002523 ORTHO05D002951 1.3e-06 57.0 36 69.4
Prupe.2G320700 Prunus persica HOM05D002523 ORTHO05D002951 1.3e-06 57.0 36 72.2
Ah.13g070910 Amaranthus hybridus HOM05D002523 ORTHO05D002951 1.7e-06 56.6 41 63.4
Duzib068G1190 Durio zibethinus HOM05D002523 ORTHO05D002951 1.7e-06 56.6 35 74.3
Duzib084G1409 Durio zibethinus HOM05D002523 ORTHO05D002951 1.7e-06 56.6 35 74.3
SGA_v2.0_scaffold18G08481 Striga asiatica HOM05D002523 ORTHO05D002951 1.7e-06 56.6 55 50.9
CSS0049255 Camellia sinensis var. sinensis HOM05D002523 ORTHO05D002951 2.3e-06 56.2 55 49.1
ClCG07G009670 Citrullus lanatus HOM05D002523 ORTHO05D002951 2.3e-06 56.2 36 69.4
CsaV3_4G008700 Cucumis sativus L. HOM05D002523 ORTHO05D002951 2.3e-06 56.2 36 69.4
Duzib268G1611 Durio zibethinus HOM05D002523 ORTHO05D002951 2.3e-06 56.2 36 69.4
MBI04_g27763_MAGBIO Magnolia biondii HOM05D002523 ORTHO05D002951 2.3e-06 56.2 35 68.6
Oeu017366.1 Olea europaea HOM05D002523 ORTHO05D002951 2.3e-06 56.2 36 69.4
Sed0017970 Sechium edule HOM05D002523 ORTHO05D002951 2.3e-06 56.2 36 69.4
Migut.F00135 Erythranthe guttata HOM05D002523 ORTHO05D002951 3.0e-06 55.8 36 69.4
Hund09728 Selenicereus undatus HOM05D002523 ORTHO05D002951 3.0e-06 55.8 34 73.5
Actinidia34279 Actinidia chinensis HOM05D002523 ORTHO05D002951 3.9e-06 55.5 55 49.1
CSS0009553 Camellia sinensis var. sinensis HOM05D002523 ORTHO05D002951 3.9e-06 55.5 36 69.4
Ciclev10020049m.g Citrus clementina HOM05D002523 ORTHO05D002951 3.9e-06 55.5 35 74.3
CANSAT56G0944 Cannabis sativa HOM05D002523 ORTHO05D002951 5.1e-06 55.1 72 44.4
QL09p006507 Quercus lobata HOM05D002523 ORTHO05D002951 5.1e-06 55.1 55 47.3
Thecc.01G330500 Theobroma cacao HOM05D002523 ORTHO05D002951 5.1e-06 55.1 36 66.7
TAR376G0262 Trochodendron aralioides HOM05D002523 ORTHO05D022880 5.1e-06 55.1 35 65.7
CiPaw.05G207200 Carya illinoinensis HOM05D002523 ORTHO05D002951 6.6e-06 54.7 36 66.7
COL.COLO4_23073 Corchorus olitorius HOM05D002523 ORTHO05D002951 6.6e-06 54.7 36 66.7
TWI39G0415 Tripterygium wilfordii HOM05D002523 ORTHO05D002951 6.6e-06 54.7 57 47.4
MD07G1301900 Malus domestica HOM05D002523 ORTHO05D002951 8.6e-06 54.3 55 47.3


User provided reference genes

Program Settings