Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G080700 Manihot esculenta HOM05D003206 ORTHO05D014283 2.7e-36 154.8 79 100.0
Manes.11G060045 Manihot esculenta HOM05D003206 ORTHO05D005207 8.6e-35 149.8 78 96.2
Manes.11G060600 Manihot esculenta HOM05D003206 ORTHO05D005207 8.6e-35 149.8 78 96.2
MELO3C023442.2 Cucumis melo HOM05D003206 ORTHO05D005207 1.4e-32 142.5 78 91.0
ClCG09G003080 Citrullus lanatus HOM05D003206 ORTHO05D005207 1.8e-32 142.1 78 89.7
Duzib160G0518 Durio zibethinus HOM05D003206 ORTHO05D005207 1.8e-32 142.1 78 89.7
Rhsim08G0211000 Rhododendron simsii HOM05D003206 ORTHO05D005207 1.8e-32 142.1 78 89.7
Thecc.06G031800 Theobroma cacao HOM05D003206 ORTHO05D005207 1.8e-32 142.1 78 89.7
Actinidia18218 Actinidia chinensis HOM05D003206 ORTHO05D005207 2.4e-32 141.7 78 89.7
Eucgr.F03908 Eucalyptus grandis HOM05D003206 ORTHO05D005207 2.4e-32 141.7 78 89.7
CSS0015374 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D005207 3.1e-32 141.4 78 87.2
Aqoxy7G02449 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 4.0e-32 141.0 78 88.5
Dinv30630 Davidia involucrata HOM05D003206 ORTHO05D005207 4.0e-32 141.0 78 88.5
ECA247G4132 Erigeron canadensis HOM05D003206 ORTHO05D005207 4.0e-32 141.0 78 87.2
GSVIVG01017422001 Vitis vinifera HOM05D003206 ORTHO05D005207 4.0e-32 141.0 78 88.5
QL05p032185 Quercus lobata HOM05D003206 ORTHO05D005207 5.2e-32 140.6 78 88.5
Lj5A75T45 Lonicera japonica HOM05D003206 ORTHO05D005207 6.8e-32 140.2 78 87.2
CiPaw.01G250100 Carya illinoinensis HOM05D003206 ORTHO05D005207 8.9e-32 139.8 78 88.5
MD17G1215600 Malus domestica HOM05D003206 ORTHO05D005207 8.9e-32 139.8 78 88.5
vmacro19016 Vaccinium macrocarpon HOM05D003206 ORTHO05D005207 8.9e-32 139.8 78 87.2
Hma1.2p1_0461F.1_g157780 Hydrangea macrophylla HOM05D003206 ORTHO05D005207 1.2e-31 139.4 78 87.2
SalBow6G0819 Salvia bowleyana HOM05D003206 ORTHO05D005207 1.2e-31 139.4 78 87.2
Sed0019835 Sechium edule HOM05D003206 ORTHO05D005207 1.2e-31 139.4 78 88.5
Ah.01g020430 Amaranthus hybridus HOM05D003206 ORTHO05D005207 1.5e-31 139.0 78 87.2
Cpa.g.sc10.151 Carica papaya HOM05D003206 ORTHO05D005207 1.5e-31 139.0 78 88.5
Cc04_g04590 Coffea canephora HOM05D003206 ORTHO05D005207 1.5e-31 139.0 78 87.2
CsaV3_7G032210 Cucumis sativus L. HOM05D003206 ORTHO05D005207 1.5e-31 139.0 78 89.7
COL.COLO4_11866 Corchorus olitorius HOM05D003206 ORTHO05D005207 2.0e-31 138.7 78 85.9
Nn8g39607 Nelumbo nucifera HOM05D003206 ORTHO05D005207 2.0e-31 138.7 78 87.2
PGR102G2366 Punica granatum HOM05D003206 ORTHO05D005207 2.0e-31 138.7 78 85.9
QL05p032218 Quercus lobata HOM05D003206 ORTHO05D005207 2.0e-31 138.7 78 87.2
RcHm_v2.0_Chr2g0134571 Rosa chinensis HOM05D003206 ORTHO05D005207 2.0e-31 138.7 78 85.9
Migut.I00744 Erythranthe guttata HOM05D003206 ORTHO05D005207 2.6e-31 138.3 78 87.2
Gohir.A06G115200 Gossypium hirsutum HOM05D003206 ORTHO05D005207 2.6e-31 138.3 78 87.2
Oeu004210.1 Olea europaea HOM05D003206 ORTHO05D005207 2.6e-31 138.3 78 85.9
CANSAT56G2846 Cannabis sativa HOM05D003206 ORTHO05D005207 3.4e-31 137.9 78 85.9
AUR62011496 Chenopodium quinoa HOM05D003206 ORTHO05D005207 3.4e-31 137.9 78 87.2
AUR62016312 Chenopodium quinoa HOM05D003206 ORTHO05D005207 3.4e-31 137.9 78 87.2
Eucgr.J03080 Eucalyptus grandis HOM05D003206 ORTHO05D005207 4.4e-31 137.5 78 87.2
unitig_27.g24952 Utricularia gibba HOM05D003206 ORTHO05D002964 4.4e-31 137.5 78 85.9
EL10Ac9g21895 Beta vulgaris HOM05D003206 ORTHO05D005207 5.8e-31 137.1 78 85.9
HanXRQChr02g0034821 Helianthus annuus HOM05D003206 ORTHO05D005207 5.8e-31 137.1 78 84.6
FvH4_6g29330 Fragaria vesca HOM05D003206 ORTHO05D005207 7.6e-31 136.7 78 84.6
FAN02G2065 Fragaria x ananassa HOM05D003206 ORTHO05D005207 7.6e-31 136.7 78 84.6
FAN02G2439 Fragaria x ananassa HOM05D003206 ORTHO05D005207 7.6e-31 136.7 78 84.6
FAN05G2875 Fragaria x ananassa HOM05D003206 ORTHO05D005207 7.6e-31 136.7 78 84.6
FAN09G0310 Fragaria x ananassa HOM05D003206 ORTHO05D005207 7.6e-31 136.7 78 84.6
FAN14G4723 Fragaria x ananassa HOM05D003206 ORTHO05D005207 7.6e-31 136.7 78 84.6
MD09G1222300 Malus domestica HOM05D003206 ORTHO05D005207 7.6e-31 136.7 78 84.6
TAR626G1759 Trochodendron aralioides HOM05D003206 ORTHO05D005207 7.6e-31 136.7 78 85.9
Cfa001939 Carpinus fangiana HOM05D003206 ORTHO05D005207 9.9e-31 136.3 77 88.3
Os04g0647800 Oryza sativa ssp. japonica HOM05D003206 ORTHO05D005207 9.9e-31 136.3 78 85.9
MSTRG.4700 Avicennia marina HOM05D003206 ORTHO05D005207 1.3e-30 136.0 78 87.2
Prupe.3G091800 Prunus persica HOM05D003206 ORTHO05D005207 1.7e-30 135.6 78 87.2
TAR383G0666 Trochodendron aralioides HOM05D003206 ORTHO05D005207 1.7e-30 135.6 78 85.9
Gorai.010G138000 Gossypium raimondii HOM05D003206 ORTHO05D005207 2.2e-30 135.2 78 85.9
Zm00001eb068580 Zea mays HOM05D003206 ORTHO05D005207 2.9e-30 134.8 78 84.6
Duzib192G0877 Durio zibethinus HOM05D003206 ORTHO05D005207 3.8e-30 134.4 78 85.9
Sc10g0006040 Simmondsia chinensis HOM05D003206 ORTHO05D005207 4.9e-30 134.0 78 83.3
PSO017G7051 Papaver somniferum HOM05D003206 ORTHO05D005207 6.4e-30 133.7 78 82.1
PSO170G1430 Papaver somniferum HOM05D003206 ORTHO05D005207 6.4e-30 133.7 78 82.1
Peaxi162Scf00553g00628 Petunia axillaris HOM05D003206 ORTHO05D005207 6.4e-30 133.7 78 84.6
CAN.G407.13 Capsicum annuum HOM05D003206 ORTHO05D005207 8.4e-30 133.3 78 84.6
unitig_699.g19091 Utricularia gibba HOM05D003206 ORTHO05D005207 8.4e-30 133.3 78 80.8
Duzib235G0619 Durio zibethinus HOM05D003206 ORTHO05D005207 1.1e-29 132.9 78 84.6
Aqoxy133s001 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 1.4e-29 132.5 78 82.1
Aqoxy7G03604 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 1.4e-29 132.5 78 82.1
Nn2g12167 Nelumbo nucifera HOM05D003206 ORTHO05D005207 1.4e-29 132.5 78 80.8
AT1G80460 Arabidopsis thaliana HOM05D003206 ORTHO05D005207 1.9e-29 132.1 77 84.4
Hund06548 Selenicereus undatus HOM05D003206 ORTHO05D005207 1.9e-29 132.1 78 83.3
BcaB02g08684 Brassica carinata HOM05D003206 ORTHO05D005207 2.4e-29 131.7 77 84.4
SGA_v2.0_scaffold5G02725 Striga asiatica HOM05D003206 ORTHO05D005207 3.2e-29 131.3 78 84.6
AL2G41040 Arabidopsis lyrata HOM05D003206 ORTHO05D005207 4.1e-29 131.0 77 84.4
Carub.0002s2712 Capsella rubella HOM05D003206 ORTHO05D005207 4.1e-29 131.0 77 84.4
BcaC08g47591 Brassica carinata HOM05D003206 ORTHO05D014283 5.4e-29 130.6 77 83.1
A07p45230 Brassica napus HOM05D003206 ORTHO05D005207 5.4e-29 130.6 77 83.1
C06p54070 Brassica napus HOM05D003206 ORTHO05D005207 5.4e-29 130.6 77 83.1
BolC6t40420H Brassica oleracea HOM05D003206 ORTHO05D005207 5.4e-29 130.6 77 83.1
BraA07t32026Z Brassica rapa HOM05D003206 ORTHO05D005207 5.4e-29 130.6 77 83.1
BcaB05g25268 Brassica carinata HOM05D003206 ORTHO05D005207 7.1e-29 130.2 77 83.1
A07p26680 Brassica napus HOM05D003206 ORTHO05D005207 7.1e-29 130.2 77 83.1
Lsat_1_v5_gn_1_31380 Lactuca sativa HOM05D003206 ORTHO05D005207 7.1e-29 130.2 74 86.5
A02p23540 Brassica napus HOM05D003206 ORTHO05D005207 9.2e-29 129.8 77 83.1
C02p37310 Brassica napus HOM05D003206 ORTHO05D005207 9.2e-29 129.8 77 83.1
BolC2t09741H Brassica oleracea HOM05D003206 ORTHO05D005207 9.2e-29 129.8 77 83.1
BraA02t07347Z Brassica rapa HOM05D003206 ORTHO05D005207 9.2e-29 129.8 77 83.1
Sopen03g036390 Solanum pennellii HOM05D003206 ORTHO05D005207 1.2e-28 129.4 78 82.1
CARHR074790 Cardamine hirsuta HOM05D003206 ORTHO05D005207 1.6e-28 129.0 77 83.1
BcaC08g45315 Brassica carinata HOM05D003206 ORTHO05D005207 2.1e-28 128.6 77 81.8
C06p29160 Brassica napus HOM05D003206 ORTHO05D005207 2.1e-28 128.6 77 81.8
BolC6t38080H Brassica oleracea HOM05D003206 ORTHO05D005207 2.1e-28 128.6 77 81.8
BraA07t30311Z Brassica rapa HOM05D003206 ORTHO05D005207 2.1e-28 128.6 77 81.8
Nitab4.5_0003072g0120 Nicotiana tabacum HOM05D003206 ORTHO05D005207 2.1e-28 128.6 78 80.8
Sp5g35360 Schrenkiella parvula HOM05D003206 ORTHO05D005207 2.1e-28 128.6 77 83.1
Solyc03g117490.4 Solanum lycopersicum HOM05D003206 ORTHO05D005207 2.1e-28 128.6 78 82.1
Ciclev10025360m.g Citrus clementina HOM05D003206 ORTHO05D005207 2.7e-28 128.3 78 80.8
Nitab4.5_0004013g0050 Nicotiana tabacum HOM05D003206 ORTHO05D005207 2.7e-28 128.3 78 80.8
BcaC03g15965 Brassica carinata HOM05D003206 ORTHO05D005207 4.6e-28 127.5 76 82.9
BcaC03g15966 Brassica carinata HOM05D003206 ORTHO05D005207 4.6e-28 127.5 76 82.9
BcaB02g07269 Brassica carinata HOM05D003206 ORTHO05D005207 6.0e-28 127.1 77 81.8
MSTRG.11155 Avicennia marina HOM05D003206 ORTHO05D005207 7.8e-28 126.7 78 76.9
Dinv38137 Davidia involucrata HOM05D003206 ORTHO05D005207 7.8e-28 126.7 78 82.1
PSO063G0253 Papaver somniferum HOM05D003206 ORTHO05D016781 7.8e-28 126.7 78 79.5
Aa31LG4G720 Aethionema arabicum HOM05D003206 ORTHO05D005207 1.7e-27 125.6 77 81.8
Ciclev10025756m.g Citrus clementina HOM05D003206 ORTHO05D005207 3.9e-27 124.4 78 79.5
FAN02G3805 Fragaria x ananassa HOM05D003206 ORTHO05D005207 3.9e-27 124.4 78 78.2
TAR626G0098 Trochodendron aralioides HOM05D003206 ORTHO05D005207 3.9e-27 124.4 88 73.9
Haze_20327 Corylus avellana HOM05D003206 ORTHO05D005207 5.1e-27 124.0 77 83.1
Oeu018801.1 Olea europaea HOM05D003206 ORTHO05D005207 8.7e-27 123.2 101 66.3
Sabra03G0017400 Salix brachista HOM05D003206 ORTHO05D005207 1.5e-26 122.5 78 83.3
TWI12G0864 Tripterygium wilfordii HOM05D003206 ORTHO05D005207 1.5e-26 122.5 78 79.5
Ciclev10024258m.g Citrus clementina HOM05D003206 ORTHO05D005207 4.3e-26 120.9 78 76.9
Oeu004214.1 Olea europaea HOM05D003206 ORTHO05D005207 4.3e-26 120.9 116 58.6
Glyma.07G028600 Glycine max HOM05D003206 ORTHO05D005207 5.6e-26 120.6 78 78.2
Ciclev10020202m.g Citrus clementina HOM05D003206 ORTHO05D005207 7.3e-26 120.2 78 78.2
Potri.003G030900 Populus trichocarpa HOM05D003206 ORTHO05D005207 7.3e-26 120.2 78 80.8
PGSC0003DMG400014144 Solanum tuberosum HOM05D003206 ORTHO05D005207 7.3e-26 120.2 78 80.8
CSS0035908 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D014283 9.6e-26 119.8 75 80.0
DCAR_025524 Daucus carota HOM05D003206 ORTHO05D005207 9.6e-26 119.8 78 78.2
SEGI_06294 Sequoiadendron giganteum HOM05D003206 ORTHO05D005207 1.2e-25 119.4 78 78.2
GSVIVG01017394001 Vitis vinifera HOM05D003206 ORTHO05D014283 1.2e-25 119.4 67 88.1
THA.LOC104812468 Tarenaya hassleriana HOM05D003206 ORTHO05D005207 1.6e-25 119.0 77 80.5
HPP92_026428 Vanilla planifolia HOM05D003206 ORTHO05D005207 1.6e-25 119.0 78 78.2
Lsat_1_v5_gn_5_8920 Lactuca sativa HOM05D003206 ORTHO05D005207 2.1e-25 118.6 78 73.1
CDE04G3165 Ceratophyllum demersum HOM05D003206 ORTHO05D005207 8.1e-25 116.7 78 78.2
CDE02G1563 Ceratophyllum demersum HOM05D003206 ORTHO05D005207 1.4e-24 115.9 78 78.2
MBI14_g04912_MAGBIO Magnolia biondii HOM05D003206 ORTHO05D005207 3.1e-24 114.8 77 75.3
TPR.G38649 Trifolium pratense HOM05D003206 ORTHO05D005207 4.0e-24 114.4 78 73.1
Glyma.08G214200 Glycine max HOM05D003206 ORTHO05D014283 5.2e-24 114.0 78 71.8
Ca_12518_v3 Cicer arietinum L. HOM05D003206 ORTHO05D005207 6.9e-24 113.6 78 71.8
Medtr4g009920 Medicago truncatula HOM05D003206 ORTHO05D005207 6.9e-24 113.6 78 74.4
Phvul.010G157400 Phaseolus vulgaris HOM05D003206 ORTHO05D005207 6.9e-24 113.6 78 74.4
Pp3c5_10000 Physcomitrium patens HOM05D003206 ORTHO05D005207 6.9e-24 113.6 78 76.9
TPR.G12167 Trifolium pratense HOM05D003206 ORTHO05D005207 6.9e-24 113.6 78 73.1
PSO478G0299 Papaver somniferum HOM05D003206 ORTHO05D005207 9.0e-24 113.2 78 66.7
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 2.6e-23 111.7 71 74.6
VMungo0331G1864 Vigna mungo HOM05D003206 ORTHO05D005207 4.4e-23 110.9 78 74.4
Cfa021276 Carpinus fangiana HOM05D003206 ORTHO05D014283 7.6e-23 110.2 77 76.6
Lalb_Chr01g0012271 Lupinus albus HOM05D003206 ORTHO05D005207 9.9e-23 109.8 78 70.5
TPR.G38684 Trifolium pratense HOM05D003206 ORTHO05D005207 9.9e-23 109.8 78 73.1
ATR0767G098 Amborella trichopoda HOM05D003206 ORTHO05D005207 1.3e-22 109.4 78 74.4
Lj3g0014011 Lotus japonicus HOM05D003206 ORTHO05D005207 2.2e-22 108.6 78 70.5
Psat7g257640 Pisum sativum HOM05D003206 ORTHO05D005207 4.9e-22 107.5 78 69.2
AagrBONN_evm.TU.Sc2ySwM_228.3101 Anthoceros agrestis HOM05D003206 ORTHO05D005207 8.4e-22 106.7 78 70.5
DCAR_016275 Daucus carota HOM05D003206 ORTHO05D005207 1.1e-21 106.3 78 66.7
Gohir.D06G120000 Gossypium hirsutum HOM05D003206 ORTHO05D005207 1.1e-21 106.3 78 73.1
Lalb_Chr25g0279091 Lupinus albus HOM05D003206 ORTHO05D005207 1.1e-21 106.3 78 70.5
Lalb_Chr04g0262301 Lupinus albus HOM05D003206 ORTHO05D005207 2.4e-21 105.1 78 69.2
SMO271G0060 Selaginella moellendorffii HOM05D003206 ORTHO05D005207 7.1e-21 103.6 78 73.1
GSVIVG01015945001 Vitis vinifera HOM05D003206 ORTHO05D014283 4.6e-20 100.9 68 79.4
Mapoly0004s0005 Marchantia polymorpha HOM05D003206 ORTHO05D005207 1.7e-19 99.0 78 65.4
arahy.Tifrunner.gnm1.ann1.GS37TA Arachis hypogaea HOM05D003206 ORTHO05D005207 2.3e-19 98.6 78 65.4
BcaC06g35262 Brassica carinata HOM05D003206 ORTHO05D016781 3.0e-19 98.2 72 69.4
BolC3t19546H Brassica oleracea HOM05D003206 ORTHO05D016781 3.0e-19 98.2 72 69.4
arahy.Tifrunner.gnm1.ann1.TT8CUF Arachis hypogaea HOM05D003206 ORTHO05D005207 3.9e-19 97.8 78 65.4
arahy.Tifrunner.gnm1.ann1.ZMG720 Arachis hypogaea HOM05D003206 ORTHO05D005207 3.9e-19 97.8 78 65.4
C07p18050 Brassica napus HOM05D003206 ORTHO05D016781 1.1e-18 96.3 72 68.1
A03p18490 Brassica napus HOM05D003206 ORTHO05D016781 4.3e-18 94.4 72 68.1
FvH4_6g29340 Fragaria vesca HOM05D003206 ORTHO05D005207 5.6e-18 94.0 64 75.0
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 1.3e-17 92.8 72 65.3
BcaC03g17488 Brassica carinata HOM05D003206 ORTHO05D016781 3.6e-17 91.3 72 63.9
BcaC07g39914 Brassica carinata HOM05D003206 ORTHO05D005207 3.6e-17 91.3 72 65.3
BolC2t11510H Brassica oleracea HOM05D003206 ORTHO05D016781 3.6e-17 91.3 72 63.9
Haze_12952 Corylus avellana HOM05D003206 ORTHO05D005207 1.3e-14 82.8 47 83.0
RcHm_v2.0_Chr2g0134741 Rosa chinensis HOM05D003206 ORTHO05D034830 2.2e-14 82.0 47 80.9
PRCOL_00002221 Prasinoderma coloniale HOM05D003206 ORTHO05D005207 1.9e-13 79.0 78 56.4
Actinidia03225 Actinidia chinensis HOM05D003206 ORTHO05D005207 2.4e-13 78.6 68 66.2
Thhalv10018399m.g Eutrema salsugineum HOM05D003206 ORTHO05D005207 3.2e-13 78.2 47 78.7
Cre04.g224150 Chlamydomonas reinhardtii HOM05D003206 ORTHO05D005207 7.1e-13 77.0 77 55.8
Cfa003309 Carpinus fangiana HOM05D003206 ORTHO05D005207 9.3e-13 76.6 44 81.8
CSS0045117 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D005207 1.6e-12 75.9 53 69.8
CBR_g30419 Chara braunii HOM05D003206 ORTHO05D005207 1.6e-12 75.9 95 45.3
CBR_g36912 Chara braunii HOM05D003206 ORTHO05D005207 1.6e-12 75.9 95 45.3
MCO09G056 Micromonas commoda HOM05D003206 ORTHO05D005207 2.7e-12 75.1 78 51.3
Hma1.2p1_0017F.1_g011400 Hydrangea macrophylla HOM05D003206 ORTHO05D014283 6.0e-12 73.9 78 53.8
Ciclev10027554m.g Citrus clementina HOM05D003206 ORTHO05D005207 2.3e-11 72.0 47 74.5
Pp3s42_220 Physcomitrium patens HOM05D003206 ORTHO05D310700 5.6e-10 67.4 76 51.3
Atru.chr1.2869 Acer truncatum HOM05D003206 ORTHO05D014283 1.4e-08 62.8 35 85.7
Cfa027331 Carpinus fangiana HOM05D003206 ORTHO05D122679 3.1e-08 61.6 77 44.2
Cfa012491 Carpinus fangiana HOM05D003206 ORTHO05D014283 4.0e-08 61.2 64 54.7
Manes.02G220810 Manihot esculenta HOM05D003206 ORTHO05D014283 1.5e-07 59.3 38 76.3
Atru.chr1.2868 Acer truncatum HOM05D003206 ORTHO05D005207 4.5e-07 57.8 38 78.9
Haze_16588 Corylus avellana HOM05D003206 ORTHO05D014283 9.9e-07 56.6 30 93.3
Haze_26767 Corylus avellana HOM05D003206 ORTHO05D005207 8.4e-06 53.5 78 39.7


User provided reference genes

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