Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 2.0e-218 762.3 421 100.0
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 1.5e-181 639.8 427 82.0
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 2.4e-160 569.3 426 73.2
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 1.6e-159 566.6 432 76.6
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 1.3e-158 563.5 433 70.2
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 5.1e-158 561.6 391 74.7
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 2.1e-156 556.2 435 69.2
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 2.4e-155 552.7 383 73.4
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 1.5e-154 550.1 388 74.7
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 2.0e-154 549.7 396 74.2
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 9.9e-154 547.4 401 69.8
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 1.1e-152 543.9 401 70.6
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 4.2e-152 542.0 438 69.6
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 3.9e-150 535.4 437 69.3
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 1.1e-149 533.9 435 70.3
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 4.3e-149 531.9 435 68.5
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 4.8e-148 528.5 433 69.5
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 1.1e-147 527.3 435 69.9
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 1.4e-147 526.9 434 66.8
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 2.4e-147 526.2 437 66.6
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 5.8e-146 521.5 393 69.0
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 4.9e-145 518.5 433 64.4
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 1.4e-144 516.9 404 69.1
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 5.4e-144 515.0 434 67.5
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 1.2e-143 513.8 433 62.8
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 1.6e-143 513.5 433 67.7
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 1.6e-143 513.5 440 65.5
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 2.1e-143 513.1 391 69.1
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 2.1e-143 513.1 439 67.2
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 3.5e-143 512.3 437 68.0
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 1.0e-142 510.8 435 67.1
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.0e-142 510.8 440 67.5
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 1.0e-142 510.8 435 65.7
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.8e-142 510.0 388 72.4
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.3e-142 509.6 439 67.0
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 3.0e-142 509.2 424 67.5
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 5.1e-142 508.4 439 67.2
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 8.7e-142 507.7 442 64.0
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 1.1e-141 507.3 441 67.8
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.9e-141 506.5 422 68.2
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 2.5e-141 506.1 433 66.5
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 4.3e-141 505.4 406 67.5
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 7.4e-141 504.6 434 61.3
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 9.6e-141 504.2 424 68.2
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 9.6e-141 504.2 433 61.4
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 1.6e-140 503.4 401 66.6
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 2.8e-140 502.7 421 67.5
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 3.7e-140 502.3 434 66.1
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 4.8e-140 501.9 385 71.2
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 4.8e-140 501.9 429 68.1
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 6.9e-139 498.0 421 67.2
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 9.0e-139 497.7 437 65.7
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 9.0e-139 497.7 437 65.7
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 1.5e-138 496.9 384 67.2
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 1.5e-138 496.9 428 68.2
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 2.0e-138 496.5 384 67.2
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 2.0e-138 496.5 384 67.2
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 2.6e-138 496.1 428 68.7
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.6e-138 496.1 437 65.2
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 3.4e-138 495.7 389 68.6
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 4.5e-138 495.4 437 65.4
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 4.5e-138 495.4 433 65.1
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 5.8e-138 495.0 433 62.6
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.3e-137 493.8 436 64.7
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 3.8e-137 492.3 435 65.5
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 4.9e-137 491.9 393 66.9
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 1.4e-136 490.3 436 64.2
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 3.2e-136 489.2 436 64.2
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 3.2e-136 489.2 434 64.3
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 7.9e-135 484.6 411 62.5
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 1.0e-134 484.2 402 64.7
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 1.3e-134 483.8 432 64.4
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 2.3e-134 483.0 436 64.4
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 3.9e-134 482.3 434 65.9
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 5.1e-134 481.9 390 64.6
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 6.7e-134 481.5 422 64.7
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 1.1e-133 480.7 422 68.2
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 1.9e-133 479.9 393 65.6
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 4.3e-133 478.8 396 65.7
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 1.3e-132 477.2 386 65.8
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 1.3e-132 477.2 433 63.3
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.6e-132 476.9 425 64.2
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 3.7e-132 475.7 388 65.7
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 6.2e-132 474.9 438 61.0
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 1.1e-131 474.2 417 62.4
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.8e-131 473.4 424 63.4
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 2.4e-131 473.0 421 64.4
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 2.4e-131 473.0 433 59.8
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 3.1e-131 472.6 424 62.0
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 4.0e-131 472.2 438 63.0
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 6.9e-131 471.5 393 62.8
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 2.9e-129 466.1 391 64.7
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 1.4e-128 463.8 405 63.2
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 2.5e-128 463.0 362 67.1
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.2e-127 460.7 425 64.2
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 1.2e-127 460.7 435 62.8
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 1.8e-126 456.8 405 62.5
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 1.1e-125 454.1 389 64.8
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 2.5e-125 453.0 396 61.6
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 2.5e-125 453.0 393 62.3
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 3.1e-123 446.0 425 63.3
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 4.1e-123 445.7 418 62.4
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 9.0e-123 444.5 374 61.2
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 1.5e-122 443.7 387 63.6
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 3.4e-122 442.6 435 58.9
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 5.9e-122 441.8 426 63.8
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 5.9e-122 441.8 387 61.2
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 1.7e-121 440.3 422 61.8
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 6.1e-119 431.8 422 61.1
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 3.0e-118 429.5 392 56.9
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 8.8e-118 427.9 392 56.6
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.5e-117 426.4 391 56.8
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 3.7e-116 422.5 396 59.1
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 1.4e-110 404.1 384 58.6
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 3.9e-110 402.5 381 57.5
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 3.3e-109 399.4 299 69.2
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 4.8e-108 395.6 381 56.7
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 5.3e-107 392.1 324 63.9
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 1.3e-105 387.5 413 53.5
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 8.0e-103 378.3 382 56.0
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 7.0e-99 365.2 391 50.4
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 4.4e-85 319.3 335 54.0
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 6.6e-81 305.4 428 45.6
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 1.2e-74 284.6 240 62.1
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 3.0e-65 253.4 306 46.4
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 1.1e-64 251.5 226 55.8
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 3.3e-64 250.0 213 57.3
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 1.8e-62 244.2 236 58.9
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 1.3e-60 238.0 385 37.9
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 8.9e-54 215.3 162 68.5
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 5.8e-53 212.6 197 73.1
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 7.5e-53 212.2 156 71.2
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.1e-51 208.4 199 68.3
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 7.1e-51 205.7 204 55.4
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 3.2e-43 180.3 154 60.4
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 2.3e-41 174.1 355 33.5
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 4.3e-40 169.9 300 34.7
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 3.0e-17 94.0 75 60.0
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 1.5e-16 91.7 117 49.6
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.2e-10 72.0 74 51.4
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 1.5e-08 65.1 322 23.3
C05p10420 Brassica napus HOM05D005312 ORTHO05D006459 8.2e-07 59.3 36 66.7


User provided reference genes

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