Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 0.0e+00 1454.1 738 100.0
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 4.1e-264 914.8 754 66.8
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 1.3e-254 883.2 810 60.9
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 6.9e-251 870.9 772 62.6
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 1.3e-249 866.7 777 63.3
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 6.9e-243 844.3 767 61.7
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 5.1e-238 828.2 769 60.7
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 1.3e-236 823.5 769 60.2
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 8.1e-236 820.8 771 60.2
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 3.1e-235 818.9 824 58.1
Sabra14G0109500 Salix brachista HOM05D006071 ORTHO05D007462 2.9e-233 812.4 805 58.5
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 1.6e-231 806.6 787 58.6
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 1.0e-230 803.9 789 59.1
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 8.7e-230 800.8 739 61.4
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 3.3e-229 798.9 779 59.9
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 6.2e-228 794.7 782 59.3
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 6.2e-228 794.7 782 59.3
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 2.4e-227 792.7 778 58.0
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 2.0e-226 789.6 771 59.4
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 1.0e-225 787.3 779 58.4
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 6.0e-223 778.1 809 57.5
MD09G1003000 Malus domestica HOM05D006071 ORTHO05D007462 1.5e-221 773.5 734 60.2
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 1.3e-220 770.4 777 57.5
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 2.8e-220 769.2 777 57.3
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 6.9e-219 764.6 736 59.5
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 1.2e-218 763.8 769 56.7
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 5.5e-216 755.0 782 56.8
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 9.3e-216 754.2 609 65.5
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 1.0e-214 750.7 765 56.3
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 3.9e-214 748.8 736 57.5
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 8.7e-214 747.7 773 57.3
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 1.5e-213 746.9 605 66.3
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 3.3e-213 745.7 762 56.3
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 7.4e-213 744.6 760 56.2
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 9.7e-213 744.2 759 56.5
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 1.6e-212 743.4 739 57.6
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 2.8e-212 742.7 707 58.8
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 4.8e-212 741.9 765 57.3
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 1.4e-211 740.3 774 56.7
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 6.9e-211 738.0 741 57.9
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 9.1e-211 737.6 733 57.4
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 6.5e-209 731.5 749 55.9
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 4.6e-207 725.3 760 56.7
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 7.9e-207 724.5 765 56.3
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 2.0e-205 719.9 698 59.6
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 2.0e-205 719.9 695 57.6
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 2.8e-204 716.1 751 55.9
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 8.2e-204 714.5 746 56.0
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 2.7e-199 699.5 769 54.6
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 7.9e-199 698.0 587 63.7
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 1.0e-198 697.6 774 53.5
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 3.3e-197 692.6 775 54.5
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 9.7e-197 691.0 777 53.0
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 2.2e-196 689.9 781 52.9
FvH4_6g54271 Fragaria vesca HOM05D006071 ORTHO05D007462 3.7e-196 689.1 658 60.3
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 8.2e-196 688.0 766 54.0
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 1.8e-195 686.8 744 55.5
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 2.4e-195 686.4 769 54.5
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 9.1e-195 684.5 758 54.1
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 7.7e-194 681.4 813 52.3
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 6.1e-191 671.8 778 53.6
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 1.4e-190 670.6 702 56.8
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 4.0e-190 669.1 778 53.3
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 8.8e-190 667.9 752 52.8
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 4.4e-189 665.6 777 52.3
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 2.8e-188 662.9 782 52.0
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 8.2e-188 661.4 737 52.4
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 2.0e-186 656.8 764 52.9
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 1.0e-185 654.4 781 51.6
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 6.5e-185 651.7 691 52.7
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 6.5e-185 651.7 783 51.5
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 1.1e-184 651.0 759 53.4
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 3.2e-184 649.4 761 52.6
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 1.2e-183 647.5 763 53.1
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 4.7e-183 645.6 784 50.0
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 1.0e-182 644.4 756 51.3
Actinidia36244 Actinidia chinensis HOM05D000877 ORTHO05D001509 3.0e-182 642.9 672 55.7
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 4.0e-182 642.5 742 53.2
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 3.4e-181 639.4 788 49.4
C02p53260 Brassica napus HOM05D006071 ORTHO05D007462 5.7e-181 638.6 778 48.8
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 5.7e-181 638.6 626 57.8
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 4.8e-180 635.6 774 48.7
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 6.3e-180 635.2 788 49.5
BolC2t11398H Brassica oleracea HOM05D006071 ORTHO05D007462 1.1e-179 634.4 775 48.6
Hma1.2p1_0421F.1_g149975 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 2.7e-170 603.2 476 64.7
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 1.9e-168 597.0 768 48.8
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 3.3e-168 596.3 793 47.4
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 2.8e-167 593.2 815 48.0
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 1.2e-159 567.8 770 47.4
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 1.1e-158 564.7 770 46.8
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 4.7e-151 539.3 790 45.4
Atru.chr6.2689 Acer truncatum HOM05D006071 ORTHO05D007462 8.6e-145 518.5 421 64.4
Hma1.2p1_0033F.1_g021090 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 3.6e-143 513.1 559 53.3
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 1.1e-134 485.0 502 57.6
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 9.9e-133 478.4 841 41.1
unitig_0.g2406 Utricularia gibba HOM05D006071 ORTHO05D007462 1.4e-131 474.6 630 46.5
COL.COLO4_13369 Corchorus olitorius HOM05D006071 ORTHO05D007462 2.3e-129 467.2 707 45.1
AUR62041072 Chenopodium quinoa HOM05D006071 ORTHO05D007462 7.4e-120 435.6 526 49.2
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 8.1e-119 432.2 591 46.7
Mapoly0006s0082 Marchantia polymorpha HOM05D006071 ORTHO05D007462 9.9e-117 425.2 680 39.4
SMO141G0304 Selaginella moellendorffii HOM05D006071 ORTHO05D007462 1.9e-112 411.0 802 37.7
SHI11389 Sapria himalayana HOM05D006071 ORTHO05D007462 7.6e-109 399.1 474 49.2
Pp3c20_8910 Physcomitrium patens HOM05D006071 ORTHO05D007462 2.1e-106 391.0 746 36.9
CSS0035612 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 3.3e-104 383.6 488 47.7
CBR_g4363 Chara braunii HOM05D006071 ORTHO05D007462 5.7e-80 303.1 795 31.2
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 1.9e-75 288.1 376 49.7
AagrBONN_evm.TU.Sc2ySwM_344.4297 Anthoceros agrestis HOM05D006071 ORTHO05D007462 3.1e-70 270.8 749 32.2
Psat2g052360 Pisum sativum HOM05D006071 ORTHO05D007462 1.1e-59 235.7 451 40.6
AUR62041071 Chenopodium quinoa HOM05D006071 ORTHO05D007462 2.7e-53 214.5 229 56.8
Psat2g087400 Pisum sativum HOM05D006071 ORTHO05D007462 1.3e-52 212.2 335 45.1
CDE05G1324 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 2.7e-45 188.0 240 47.9
Atru.chr6.2690 Acer truncatum HOM05D006071 ORTHO05D007462 6.2e-42 176.8 205 55.6
HanXRQChr17g0550971 Helianthus annuus HOM05D006071 ORTHO05D007462 8.9e-41 172.9 195 51.3
HanXRQChr17g0550951 Helianthus annuus HOM05D006071 ORTHO05D007462 1.5e-35 155.6 245 47.3
MCO15G395 Micromonas commoda HOM05D006071 ORTHO05D007462 4.4e-32 144.1 716 24.0
Cre03.g144687 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 1.2e-29 136.0 635 23.3
Psat0s2046g0080 Pisum sativum HOM05D006071 ORTHO05D007462 1.0e-28 132.9 138 58.7
Sc07g0003760 Simmondsia chinensis HOM05D006071 ORTHO05D007462 1.2e-26 125.9 143 51.0
Psat0s2046g0120 Pisum sativum HOM05D006071 ORTHO05D007462 8.4e-23 113.2 347 30.5
Lj1g0013684 Lotus japonicus HOM05D006071 ORTHO05D007462 1.2e-21 109.4 126 52.4
Psat2g087520 Pisum sativum HOM05D006071 ORTHO05D007462 3.9e-20 104.4 152 48.0
Atru.chr6.2688 Acer truncatum HOM05D006071 ORTHO05D007462 5.6e-19 100.5 98 60.2
Actinidia09845 Actinidia chinensis HOM05D006071 ORTHO05D007462 1.9e-14 85.5 112 42.0
Cre16.g681251 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 6.0e-13 80.5 175 29.7
CDE05G2071 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 1.7e-12 79.0 106 50.0
Actinidia09844 Actinidia chinensis HOM05D006071 ORTHO05D007462 7.3e-11 73.6 84 54.8
unitig_0.g2405 Utricularia gibba HOM05D006071 ORTHO05D007462 1.4e-09 69.3 94 53.2
Hma1.2p1_0868F.1_g230520 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 3.4e-08 64.7 148 35.8
Actinidia12815 Actinidia chinensis HOM05D000463 ORTHO05D001294 2.9e-07 61.6 174 26.4
Nitab4.5_0004411g0010 Nicotiana tabacum HOM05D000463 ORTHO05D001294 4.9e-07 60.8 66 39.4
Solyc02g078320.3 Solanum lycopersicum HOM05D000463 ORTHO05D001294 6.4e-07 60.5 66 40.9
Sopen02g023160 Solanum pennellii HOM05D000463 ORTHO05D001294 8.4e-07 60.1 66 39.4
PGSC0003DMG400029719 Solanum tuberosum HOM05D000463 ORTHO05D001294 8.4e-07 60.1 66 39.4
Cfa014606 Carpinus fangiana HOM05D000463 ORTHO05D001294 1.4e-06 59.3 104 30.8
Haze_13153 Corylus avellana HOM05D000463 ORTHO05D001294 1.4e-06 59.3 104 30.8
Nitab4.5_0002158g0130 Nicotiana tabacum HOM05D000463 ORTHO05D001294 1.4e-06 59.3 66 37.9
Peaxi162Scf00736g00046 Petunia axillaris HOM05D000463 ORTHO05D001294 1.9e-06 58.9 74 33.8
PSO017G5908 Papaver somniferum HOM05D000515 ORTHO05D005511 3.2e-06 58.2 64 46.9
Migut.M01146 Erythranthe guttata HOM05D000463 ORTHO05D001294 9.3e-06 56.6 66 34.8


User provided reference genes

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