Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G070600 Manihot esculenta HOM05D003613 ORTHO05D004055 1.6e-43 179.1 94 100.0
Manes.04G099000 Manihot esculenta HOM05D003613 ORTHO05D004055 1.3e-37 159.5 96 88.5
Potri.003G186400 Populus trichocarpa HOM05D003613 ORTHO05D004055 9.6e-33 143.3 95 78.9
Cfa004173 Carpinus fangiana HOM05D003613 ORTHO05D004055 2.8e-32 141.7 95 80.0
CiPaw.01G052100 Carya illinoinensis HOM05D003613 ORTHO05D004055 1.1e-31 139.8 95 77.9
Potri.001G038750 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.4e-31 139.4 95 76.8
Sabra03G0136400 Salix brachista HOM05D003613 ORTHO05D004055 3.1e-31 138.3 86 80.2
Potri.001G038200 Populus trichocarpa HOM05D003613 ORTHO05D004055 4.0e-31 137.9 95 75.8
Potri.001G040300 Populus trichocarpa HOM05D003613 ORTHO05D004055 9.0e-31 136.7 95 75.8
VMungo0540G1949 Vigna mungo HOM05D003613 ORTHO05D004055 1.2e-30 136.3 95 72.6
Haze_15237 Corylus avellana HOM05D003613 ORTHO05D004055 1.5e-30 136.0 95 77.9
Glyma.15G063700 Glycine max HOM05D003613 ORTHO05D004055 1.5e-30 136.0 95 72.6
Glyma.13G250700 Glycine max HOM05D003613 ORTHO05D004055 2.0e-30 135.6 95 72.6
TWI75G1756 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 2.0e-30 135.6 95 74.7
RcHm_v2.0_Chr2g0131951 Rosa chinensis HOM05D003613 ORTHO05D004055 2.6e-30 135.2 95 73.7
TWI31G1088 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 2.6e-30 135.2 92 76.1
Atru.chr1.2819 Acer truncatum HOM05D003613 ORTHO05D004055 3.4e-30 134.8 96 75.0
Sabra03G0136500 Salix brachista HOM05D003613 ORTHO05D004055 4.5e-30 134.4 85 78.8
Phvul.006G195900 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 9.9e-30 133.3 95 71.6
Haze_16413 Corylus avellana HOM05D003613 ORTHO05D004055 1.3e-29 132.9 95 75.8
Haze_16416 Corylus avellana HOM05D003613 ORTHO05D004055 1.3e-29 132.9 95 75.8
ClCG10G012830 Citrullus lanatus HOM05D003613 ORTHO05D004055 2.2e-29 132.1 96 76.0
CsaV3_3G032670 Cucumis sativus L. HOM05D003613 ORTHO05D004055 2.2e-29 132.1 96 76.0
Cpa.g.sc68.45 Carica papaya HOM05D003613 ORTHO05D004055 6.4e-29 130.6 93 78.5
Dinv21437 Davidia involucrata HOM05D003613 ORTHO05D004055 6.4e-29 130.6 102 73.5
Glyma.01G154800 Glycine max HOM05D003613 ORTHO05D004055 6.4e-29 130.6 95 69.5
MELO3C024884.2 Cucumis melo HOM05D003613 ORTHO05D004055 8.4e-29 130.2 96 75.0
TAR383G0763 Trochodendron aralioides HOM05D003613 ORTHO05D004055 1.9e-28 129.0 102 73.5
Prupe.3G105500 Prunus persica HOM05D003613 ORTHO05D004055 4.2e-28 127.9 95 71.6
MELO3C029246.2 Cucumis melo HOM05D003613 ORTHO05D004055 5.5e-28 127.5 95 71.6
Eucgr.F03989 Eucalyptus grandis HOM05D003613 ORTHO05D004055 5.5e-28 127.5 97 75.3
Ciclev10026842m.g Citrus clementina HOM05D003613 ORTHO05D004055 9.3e-28 126.7 95 69.5
Gohir.A06G141700 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.2e-27 126.3 95 69.5
Ca_00210_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 1.6e-27 125.9 96 70.8
CsaV3_7G031790 Cucumis sativus L. HOM05D003613 ORTHO05D004055 1.6e-27 125.9 95 71.6
Glyma.15G176700 Glycine max HOM05D003613 ORTHO05D004055 1.6e-27 125.9 95 68.4
Gohir.D06G146000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.6e-27 125.9 95 68.4
Gorai.010G170200 Gossypium raimondii HOM05D003613 ORTHO05D004055 1.6e-27 125.9 95 68.4
ClCG09G003430 Citrullus lanatus HOM05D003613 ORTHO05D004055 2.1e-27 125.6 95 70.5
Lj6g0025627 Lotus japonicus HOM05D003613 ORTHO05D004055 2.1e-27 125.6 95 66.3
Sed0006875 Sechium edule HOM05D003613 ORTHO05D004055 2.1e-27 125.6 96 70.8
Duzib235G1294 Durio zibethinus HOM05D003613 ORTHO05D004055 2.7e-27 125.2 95 67.4
FAN02G4453 Fragaria x ananassa HOM05D003613 ORTHO05D004055 2.7e-27 125.2 91 72.5
MD09G1229400 Malus domestica HOM05D003613 ORTHO05D004055 2.7e-27 125.2 95 71.6
Thecc.06G133700 Theobroma cacao HOM05D003613 ORTHO05D004055 7.9e-27 123.6 96 68.8
QL12p003368 Quercus lobata HOM05D003613 ORTHO05D004055 3.0e-26 121.7 93 74.2
TPR.G32634 Trifolium pratense HOM05D003613 ORTHO05D004055 3.0e-26 121.7 95 69.5
Duzib160G0323 Durio zibethinus HOM05D003613 ORTHO05D004055 3.9e-26 121.3 95 65.3
MD17G1228300 Malus domestica HOM05D003613 ORTHO05D004055 3.9e-26 121.3 95 68.4
COL.COLO4_30901 Corchorus olitorius HOM05D003613 ORTHO05D004055 5.1e-26 120.9 96 66.7
Duzib192G0866 Durio zibethinus HOM05D003613 ORTHO05D004055 5.1e-26 120.9 95 66.3
Sed0021976 Sechium edule HOM05D003613 ORTHO05D004055 8.7e-26 120.2 95 66.3
Sed0012530 Sechium edule HOM05D003613 ORTHO05D004055 1.5e-25 119.4 93 69.9
Gohir.A10G049000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 2.5e-25 118.6 95 66.3
AT1G16170 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 3.3e-25 118.2 95 65.3
Gohir.D10G049600 Gossypium hirsutum HOM05D003613 ORTHO05D004055 5.6e-25 117.5 95 65.3
Gorai.011G053100 Gossypium raimondii HOM05D003613 ORTHO05D004055 5.6e-25 117.5 95 65.3
GSVIVG01016088001 Vitis vinifera HOM05D003613 ORTHO05D004055 1.3e-24 116.3 101 67.3
AL1G28300 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 1.6e-24 115.9 95 64.2
Lalb_Chr20g0122601 Lupinus albus HOM05D003613 ORTHO05D004055 1.6e-24 115.9 95 64.2
Medtr2g010880 Medicago truncatula HOM05D003613 ORTHO05D004055 1.6e-24 115.9 96 67.7
QL10p043081 Quercus lobata HOM05D003613 ORTHO05D004055 1.6e-24 115.9 93 72.0
Lalb_Chr16g0383261 Lupinus albus HOM05D003613 ORTHO05D004055 2.1e-24 115.5 93 67.7
Aqoxy5G00706 Aquilegia oxysepala HOM05D003613 ORTHO05D004055 3.7e-24 114.8 99 64.6
SGA_v2.0_scaffold515G52657 Striga asiatica HOM05D003613 ORTHO05D004055 6.2e-24 114.0 105 63.8
FAN14G0884 Fragaria x ananassa HOM05D008004 ORTHO05D004055 8.2e-24 113.6 76 75.0
Potri.001G039700 Populus trichocarpa HOM05D003613 ORTHO05D004055 8.2e-24 113.6 84 72.6
Nn8g40130 Nelumbo nucifera HOM05D003613 ORTHO05D004055 1.4e-23 112.8 102 67.6
Thhalv10009201m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 1.8e-23 112.5 95 64.2
Lalb_Chr19g0125611 Lupinus albus HOM05D003613 ORTHO05D004055 1.8e-23 112.5 95 64.2
SGA_v2.0_scaffold74G24606 Striga asiatica HOM05D003613 ORTHO05D004055 2.4e-23 112.1 105 62.9
Actinidia36859 Actinidia chinensis HOM05D000338 ORTHO05D003721 4.0e-23 111.3 107 62.6
Rhsim12G0183300 Rhododendron simsii HOM05D003613 ORTHO05D004055 4.0e-23 111.3 105 62.9
THA.LOC104813597 Tarenaya hassleriana HOM05D003613 ORTHO05D004055 4.0e-23 111.3 95 66.3
Psat1g210880 Pisum sativum HOM05D003613 ORTHO05D004055 5.3e-23 110.9 97 66.0
Sp1g14410 Schrenkiella parvula HOM05D003613 ORTHO05D004055 5.3e-23 110.9 95 63.2
MSTRG.9389 Avicennia marina HOM05D003613 ORTHO05D004055 6.9e-23 110.5 104 60.6
Carub.0002s2654 Capsella rubella HOM05D003613 ORTHO05D004055 6.9e-23 110.5 96 64.6
Oeu051549.1 Olea europaea HOM05D003613 ORTHO05D004055 9.0e-23 110.2 104 63.5
Aa31LG7G710 Aethionema arabicum HOM05D003613 ORTHO05D004055 1.2e-22 109.8 95 64.2
CARHR016650 Cardamine hirsuta HOM05D003613 ORTHO05D004055 1.2e-22 109.8 95 63.2
DCAR_025611 Daucus carota HOM05D003613 ORTHO05D004055 1.2e-22 109.8 101 61.4
Phvul.002G218400 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 1.2e-22 109.8 92 60.9
Lsat_1_v5_gn_5_9061 Lactuca sativa HOM05D003613 ORTHO05D004055 1.5e-22 109.4 102 62.7
Nitab4.5_0005437g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 1.5e-22 109.4 107 64.5
vmacro19080 Vaccinium macrocarpon HOM05D003613 ORTHO05D004055 1.5e-22 109.4 103 63.1
Cc04_g05380 Coffea canephora HOM05D003613 ORTHO05D004055 2.0e-22 109.0 102 60.8
BcaB02g06598 Brassica carinata HOM05D003613 ORTHO05D004055 2.6e-22 108.6 96 60.4
CSS0042010 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 2.6e-22 108.6 107 61.7
Sp5g34740 Schrenkiella parvula HOM05D003613 ORTHO05D004055 2.6e-22 108.6 96 63.5
Thhalv10019378m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 3.4e-22 108.2 96 62.5
MSTRG.11218 Avicennia marina HOM05D003613 ORTHO05D004055 5.8e-22 107.5 101 62.4
MBI14_g16433_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 5.8e-22 107.5 106 60.4
Carub.0001s1593 Capsella rubella HOM05D003613 ORTHO05D004055 7.6e-22 107.1 95 63.2
arahy.Tifrunner.gnm1.ann1.T22GZM Arachis hypogaea HOM05D003613 ORTHO05D004055 1.0e-21 106.7 81 65.4
A06p12110 Brassica napus HOM05D003613 ORTHO05D004055 1.0e-21 106.7 96 60.4
BraA06t24380Z Brassica rapa HOM05D003613 ORTHO05D004055 1.0e-21 106.7 96 60.4
FvH4_6g28090 Fragaria vesca HOM05D008004 ORTHO05D011218 1.0e-21 106.7 71 76.1
BolC5t30160H Brassica oleracea HOM05D003613 ORTHO05D004055 1.3e-21 106.3 95 61.1
MSTRG.22838 Avicennia marina HOM05D003613 ORTHO05D004055 1.7e-21 105.9 104 59.6
ECA247G1662 Erigeron canadensis HOM05D003613 ORTHO05D004055 1.7e-21 105.9 101 57.4
Sopen03g036670 Solanum pennellii HOM05D003613 ORTHO05D004055 1.7e-21 105.9 105 61.9
AT1G79660 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 2.2e-21 105.5 96 62.5
ECA232G3259 Erigeron canadensis HOM05D003613 ORTHO05D004055 2.2e-21 105.5 93 59.1
HanXRQChr04g0100011 Helianthus annuus HOM05D003613 ORTHO05D004055 2.2e-21 105.5 102 59.8
Oeu033454.1 Olea europaea HOM05D003613 ORTHO05D004055 2.2e-21 105.5 105 59.0
PGSC0003DMG400014217 Solanum tuberosum HOM05D003613 ORTHO05D004055 2.2e-21 105.5 105 61.0
CAN.G1008.14 Capsicum annuum HOM05D003613 ORTHO05D004055 2.9e-21 105.1 105 60.0
Aa31LG4G1310 Aethionema arabicum HOM05D003613 ORTHO05D004055 3.8e-21 104.8 85 69.4
AL2G40350 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 6.5e-21 104.0 96 61.5
A09p61000 Brassica napus HOM05D003613 ORTHO05D004055 6.5e-21 104.0 96 60.4
BraA09t41473Z Brassica rapa HOM05D003613 ORTHO05D004055 6.5e-21 104.0 96 60.4
CARHR073400 Cardamine hirsuta HOM05D003613 ORTHO05D004055 6.5e-21 104.0 95 64.2
SHI11349 Sapria himalayana HOM05D003613 ORTHO05D004055 6.5e-21 104.0 83 68.7
BcaB03g14503 Brassica carinata HOM05D003613 ORTHO05D004055 8.4e-21 103.6 96 60.4
BcaC05g25604 Brassica carinata HOM05D003613 ORTHO05D004055 8.4e-21 103.6 95 60.0
C08p44600 Brassica napus HOM05D003613 ORTHO05D004055 8.4e-21 103.6 96 60.4
BolC8t52006H Brassica oleracea HOM05D003613 ORTHO05D004055 8.4e-21 103.6 96 60.4
Lalb_Chr09g0327111 Lupinus albus HOM05D003613 ORTHO05D004055 8.4e-21 103.6 94 63.8
Sopen12g021630 Solanum pennellii HOM05D003613 ORTHO05D004055 8.4e-21 103.6 105 61.9
C05p14290 Brassica napus HOM05D003613 ORTHO05D004055 1.1e-20 103.2 95 60.0
Migut.D01149 Erythranthe guttata HOM05D003613 ORTHO05D004055 1.4e-20 102.8 106 54.7
Glyma.07G187000 Glycine max HOM05D003613 ORTHO05D004055 1.4e-20 102.8 92 63.0
arahy.Tifrunner.gnm1.ann1.XPM13Z Arachis hypogaea HOM05D003613 ORTHO05D004055 3.2e-20 101.7 75 64.0
Rhsim08G0202400 Rhododendron simsii HOM05D003613 ORTHO05D004055 3.2e-20 101.7 103 58.3
Solyc12g042540.1 Solanum lycopersicum HOM05D003613 ORTHO05D004055 3.2e-20 101.7 105 61.0
HanXRQChr05g0157501 Helianthus annuus HOM05D003613 ORTHO05D004055 4.2e-20 101.3 103 60.2
Lsat_1_v5_gn_4_84900 Lactuca sativa HOM05D003613 ORTHO05D004055 4.2e-20 101.3 99 57.6
SalBow1G4637 Salvia bowleyana HOM05D003613 ORTHO05D004055 4.2e-20 101.3 105 60.0
PGSC0003DMG400014438 Solanum tuberosum HOM05D003613 ORTHO05D004055 4.2e-20 101.3 105 61.0
Migut.I00632 Erythranthe guttata HOM05D003613 ORTHO05D004055 5.5e-20 100.9 106 55.7
ECA246G2284 Erigeron canadensis HOM05D003613 ORTHO05D004055 7.1e-20 100.5 102 60.8
BcaC08g47524 Brassica carinata HOM05D003613 ORTHO05D004055 1.2e-19 99.8 97 58.8
Glyma.08G062200 Glycine max HOM05D003613 ORTHO05D004055 1.6e-19 99.4 93 59.1
ATR0580G444 Amborella trichopoda HOM05D003613 ORTHO05D004055 2.1e-19 99.0 103 54.4
Os08g0266200 Oryza sativa ssp. japonica HOM05D003613 ORTHO05D004055 2.1e-19 99.0 102 56.9
unitig_22.g6276 Utricularia gibba HOM05D003613 ORTHO05D004055 2.7e-19 98.6 104 55.8
BcaC08g47525 Brassica carinata HOM05D003613 ORTHO05D004055 4.6e-19 97.8 97 59.8
BolC6t40365H Brassica oleracea HOM05D003613 ORTHO05D004055 4.6e-19 97.8 97 59.8
BcaC07g38803 Brassica carinata HOM05D003613 ORTHO05D004055 6.0e-19 97.4 96 59.4
C08p17390 Brassica napus HOM05D003613 ORTHO05D004055 6.0e-19 97.4 96 59.4
BolC8t49365H Brassica oleracea HOM05D003613 ORTHO05D004055 6.0e-19 97.4 96 59.4
Nn2g12477 Nelumbo nucifera HOM05D003613 ORTHO05D004055 7.9e-19 97.1 105 61.9
ATR0068G040 Amborella trichopoda HOM05D003613 ORTHO05D004055 1.3e-18 96.3 103 53.4
A07p44660 Brassica napus HOM05D003613 ORTHO05D004055 1.3e-18 96.3 97 58.8
BraA07t31975Z Brassica rapa HOM05D003613 ORTHO05D004055 1.3e-18 96.3 97 58.8
Lj4g0025384 Lotus japonicus HOM05D003613 ORTHO05D004055 2.3e-18 95.5 94 56.4
BcaB03g13047 Brassica carinata HOM05D003613 ORTHO05D004055 3.0e-18 95.1 96 59.4
Ca_18450_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 3.0e-18 95.1 94 53.2
MBI15_g26076_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 3.0e-18 95.1 105 56.2
Peaxi162Scf00195g00118 Petunia axillaris HOM05D003613 ORTHO05D004055 3.9e-18 94.7 80 68.8
SEGI_37804 Sequoiadendron giganteum HOM05D003613 ORTHO05D004055 5.1e-18 94.4 98 56.1
unitig_8.g3041 Utricularia gibba HOM05D003613 ORTHO05D004055 5.1e-18 94.4 104 51.9
Nitab4.5_0002700g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 6.7e-18 94.0 81 70.4
A08p31400 Brassica napus HOM05D003613 ORTHO05D004055 1.1e-17 93.2 96 57.3
BraA08t35063Z Brassica rapa HOM05D003613 ORTHO05D004055 1.1e-17 93.2 96 57.3
arahy.Tifrunner.gnm1.ann1.DB50AT Arachis hypogaea HOM05D003613 ORTHO05D004055 1.5e-17 92.8 83 63.9
BcaC03g14996 Brassica carinata HOM05D003613 ORTHO05D004055 1.9e-17 92.4 82 62.2
BolC2t08604H Brassica oleracea HOM05D003613 ORTHO05D004055 1.9e-17 92.4 82 62.2
C02p25300 Brassica napus HOM05D003613 ORTHO05D004055 2.5e-17 92.0 82 62.2
TAR626G0045 Trochodendron aralioides HOM05D003147 ORTHO05D004055 5.7e-17 90.9 92 59.8
TPR.G13916 Trifolium pratense HOM05D003613 ORTHO05D004055 1.6e-16 89.4 80 51.2
arahy.Tifrunner.gnm1.ann1.M9YY7V Arachis hypogaea HOM05D003613 ORTHO05D004055 2.2e-16 89.0 83 61.4
EL10Ac5g12047 Beta vulgaris HOM05D003613 ORTHO05D004055 3.7e-16 88.2 99 56.6
DCAR_021377 Daucus carota HOM05D003613 ORTHO05D004055 3.7e-16 88.2 100 52.0
AUR62018676 Chenopodium quinoa HOM05D003613 ORTHO05D004055 4.8e-16 87.8 101 52.5
Gohir.D09G076100 Gossypium hirsutum HOM05D003613 ORTHO05D004055 6.3e-16 87.4 95 52.6
BcaC03g17203 Brassica carinata HOM05D003613 ORTHO05D004055 1.1e-15 86.7 82 59.8
BolC2t11219H Brassica oleracea HOM05D003613 ORTHO05D004055 1.1e-15 86.7 82 59.8
BolC8t51544H Brassica oleracea HOM05D003613 ORTHO05D004055 1.4e-15 86.3 82 59.8
Gorai.006G091300 Gossypium raimondii HOM05D003613 ORTHO05D004055 1.4e-15 86.3 95 52.6
C08p39730 Brassica napus HOM05D003613 ORTHO05D004055 1.8e-15 85.9 82 58.5
Zm00001eb412000 Zea mays HOM05D003613 ORTHO05D004055 3.1e-15 85.1 101 54.5
Zm00001eb177920 Zea mays HOM05D003613 ORTHO05D004055 4.1e-15 84.7 99 51.5
Gohir.A09G076160 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.2e-14 83.2 95 51.6
Ah.12g055300 Amaranthus hybridus HOM05D003613 ORTHO05D004055 1.7e-13 79.3 103 51.5
CSS0016880 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 1.7e-13 79.3 80 60.0
arahy.Tifrunner.gnm1.ann1.LI0G0T Arachis hypogaea HOM05D003613 ORTHO05D004055 5.0e-13 77.8 71 54.9
DCAR_021376 Daucus carota HOM05D003613 ORTHO05D004055 1.8e-10 69.3 76 56.6
Pp3c10_10840 Physcomitrium patens HOM05D003613 ORTHO05D004055 6.7e-10 67.4 119 42.9
Pp3c14_25540 Physcomitrium patens HOM05D003613 ORTHO05D004055 8.8e-10 67.0 83 50.6
SMO001G0027 Selaginella moellendorffii HOM05D003613 ORTHO05D004055 2.5e-09 65.5 81 54.3
AagrBONN_evm.TU.Sc2ySwM_368.2820 Anthoceros agrestis HOM05D003613 ORTHO05D004055 3.3e-09 65.1 51 60.8
SMO307G0037 Selaginella moellendorffii HOM05D000818 ORTHO05D004055 4.3e-09 64.7 70 52.9
Mapoly0033s0168 Marchantia polymorpha HOM05D000087 ORTHO05D255883 7.4e-09 63.9 59 55.9
Nitab4.5_0002302g0110 Nicotiana tabacum HOM05D003613 ORTHO05D004055 6.9e-07 57.4 46 71.7
Aqoxy1G01707 Aquilegia oxysepala HOM05D003613 ORTHO05D004055 1.5e-06 56.2 45 57.8


User provided reference genes

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