Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 1.5e-175 619.4 312 100.0
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.2e-150 535.8 314 85.7
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.2e-150 535.8 314 86.0
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 6.0e-148 527.7 321 84.1
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.8e-145 518.8 312 83.3
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 7.6e-143 510.8 312 82.7
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 9.3e-141 503.8 312 82.1
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 1.8e-139 499.6 309 82.8
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 8.7e-139 497.3 265 90.2
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 1.6e-137 493.0 317 78.5
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 1.6e-137 493.0 319 77.4
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 6.2e-137 491.1 314 77.4
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 8.1e-137 490.7 313 78.9
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 1.4e-136 490.0 298 82.2
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 2.4e-136 489.2 316 79.1
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 3.1e-136 488.8 313 78.6
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 6.9e-136 487.6 282 83.0
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 6.9e-136 487.6 314 78.0
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 6.9e-136 487.6 271 86.0
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 6.9e-136 487.6 275 85.8
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 9.0e-136 487.3 267 86.9
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 1.5e-135 486.5 261 88.9
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 2.0e-135 486.1 312 78.5
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 2.6e-135 485.7 316 77.8
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 3.4e-135 485.3 310 79.0
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 5.8e-135 484.6 302 81.1
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 7.6e-135 484.2 310 77.7
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 7.6e-135 484.2 308 80.2
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 1.0e-134 483.8 275 85.5
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 1.7e-134 483.0 312 77.6
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 1.7e-134 483.0 310 78.4
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 2.2e-134 482.6 317 78.2
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 3.8e-134 481.9 311 77.8
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 4.9e-134 481.5 317 77.6
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 8.4e-134 480.7 313 78.9
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 1.4e-133 479.9 313 78.6
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 1.9e-133 479.6 313 77.3
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 2.5e-133 479.2 313 76.4
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 3.2e-133 478.8 254 89.8
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 3.2e-133 478.8 274 85.0
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 3.2e-133 478.8 306 78.1
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 4.2e-133 478.4 313 77.0
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 4.2e-133 478.4 255 88.6
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 5.5e-133 478.0 267 85.8
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 7.1e-133 477.6 313 76.7
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 1.6e-132 476.5 267 84.6
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 2.7e-132 475.7 307 77.5
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 2.7e-132 475.7 312 76.6
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 3.5e-132 475.3 268 84.3
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 1.0e-131 473.8 312 76.6
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 1.3e-131 473.4 312 75.6
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 1.8e-131 473.0 267 83.9
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 3.0e-131 472.2 317 76.3
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 3.0e-131 472.2 312 76.0
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 3.0e-131 472.2 311 77.5
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 3.9e-131 471.9 314 77.4
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 5.1e-131 471.5 280 82.5
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 5.1e-131 471.5 311 75.2
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 5.1e-131 471.5 311 75.2
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 6.7e-131 471.1 312 75.3
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 6.7e-131 471.1 262 84.4
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 6.7e-131 471.1 311 77.5
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 1.5e-130 469.9 312 75.0
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 1.9e-130 469.5 312 75.3
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 3.3e-130 468.8 302 77.8
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 7.4e-130 467.6 317 73.5
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 4.8e-129 464.9 312 74.7
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 8.2e-129 464.2 268 81.0
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 1.1e-128 463.8 286 78.7
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 1.8e-128 463.0 284 77.8
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 3.1e-128 462.2 251 87.3
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 3.1e-128 462.2 243 89.7
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 4.1e-128 461.8 314 73.9
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 5.3e-128 461.5 313 75.7
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 6.9e-128 461.1 313 75.7
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 3.4e-127 458.8 243 88.9
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 3.4e-127 458.8 243 88.9
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 4.5e-127 458.4 274 79.9
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 7.6e-127 457.6 312 73.7
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 1.7e-126 456.4 265 81.5
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 2.9e-126 455.7 290 76.6
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 3.8e-126 455.3 285 78.2
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 5.0e-126 454.9 312 73.7
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 5.0e-126 454.9 312 74.4
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 1.9e-125 453.0 306 72.2
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 1.9e-125 453.0 296 74.3
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 2.5e-125 452.6 274 80.7
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 2.5e-125 452.6 279 77.1
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 5.5e-125 451.4 284 76.8
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 9.3e-125 450.7 266 80.1
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 1.0e-123 447.2 262 80.2
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 3.9e-123 445.3 243 86.8
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 1.3e-121 440.3 317 72.6
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 9.0e-120 434.1 289 75.1
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 2.9e-118 429.1 252 80.2
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 5.1e-115 418.3 279 76.0
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 1.8e-112 409.8 267 73.4
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 4.5e-111 405.2 219 90.9
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 7.4e-106 387.9 272 68.8
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 1.1e-104 384.0 265 68.3
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 1.8e-104 383.3 259 69.1
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 1.3e-102 377.1 264 68.6
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.5e-101 373.6 288 70.1
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 8.0e-100 367.9 245 75.5
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 5.2e-99 365.2 202 88.6
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 4.5e-95 352.1 192 87.0
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 1.5e-93 347.1 192 84.9
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 3.2e-93 345.9 286 60.1
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 5.5e-93 345.1 190 85.8
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 7.2e-93 344.7 192 84.4
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 5.2e-91 338.6 190 83.7
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 1.4e-88 330.5 188 85.6
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 2.4e-88 329.7 265 61.5
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 1.2e-87 327.4 235 74.5
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 1.6e-87 327.0 224 71.9
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 1.1e-85 320.9 267 60.3
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 5.7e-82 308.5 243 60.5
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 1.2e-79 300.8 210 74.3
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 2.1e-68 263.5 256 53.9
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 3.5e-63 246.1 186 69.9
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 3.0e-62 243.0 258 53.9
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 3.9e-62 242.7 188 66.0
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 1.2e-39 167.9 126 64.3
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 1.3e-36 157.9 85 84.7
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 1.4e-35 154.5 302 35.4
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 4.2e-24 116.3 291 35.1
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 7.1e-24 115.5 325 29.5
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 6.0e-23 112.5 65 83.1
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 7.9e-23 112.1 70 72.9
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 4.2e-16 89.7 104 54.8
Nn5g31109 Nelumbo nucifera HOM05D006171 ORTHO05D007294 1.3e-14 84.7 60 70.0
CARHR016590 Cardamine hirsuta HOM05D006171 ORTHO05D007294 5.1e-06 56.2 82 47.6


User provided reference genes

Program Settings