Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 3.0e-117 425.2 221 100.0
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 2.6e-89 332.4 222 80.6
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 8.4e-88 327.4 221 78.7
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 7.2e-87 324.3 221 78.3
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 1.6e-86 323.2 221 81.0
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 9.7e-84 313.9 221 76.0
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 1.8e-82 309.7 213 77.0
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 9.0e-82 307.4 211 77.7
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 1.3e-80 303.5 203 76.8
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.6e-78 296.6 215 73.0
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 2.1e-78 296.2 215 74.0
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 2.7e-78 295.8 216 75.0
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 1.4e-77 293.5 211 74.4
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 1.8e-77 293.1 201 78.1
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 2.3e-77 292.7 215 73.5
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 3.9e-77 292.0 220 72.3
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 3.9e-77 292.0 220 72.3
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 5.1e-77 291.6 228 71.1
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 2.0e-76 289.7 210 75.7
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 3.3e-76 288.9 217 74.2
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 4.8e-75 285.0 230 70.4
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 1.1e-74 283.9 191 74.3
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 1.8e-74 283.1 207 72.5
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 2.4e-74 282.7 210 71.0
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 3.1e-74 282.3 217 73.3
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 5.3e-74 281.6 211 71.1
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 1.2e-73 280.4 204 71.6
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 2.0e-73 279.6 199 71.4
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 2.6e-73 279.3 217 69.1
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 4.5e-73 278.5 208 74.5
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 1.0e-72 277.3 224 71.0
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 2.2e-72 276.2 217 69.6
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 2.2e-72 276.2 221 69.2
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 2.9e-72 275.8 187 78.1
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 8.5e-72 274.2 217 71.9
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 8.5e-72 274.2 194 75.8
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 1.9e-71 273.1 216 69.0
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 5.5e-71 271.6 227 66.5
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 5.5e-71 271.6 197 70.6
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 5.5e-71 271.6 212 70.3
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 1.6e-70 270.0 209 70.3
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 1.6e-70 270.0 213 67.1
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 2.1e-70 269.6 211 70.1
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 3.6e-70 268.9 205 72.2
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 4.7e-70 268.5 208 70.7
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 7.9e-70 267.7 214 68.7
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 1.4e-69 266.9 219 68.9
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 1.8e-69 266.5 209 70.8
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 1.8e-69 266.5 177 79.7
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 6.7e-69 264.6 224 65.6
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 2.0e-68 263.1 211 66.4
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 2.0e-68 263.1 209 67.0
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 1.7e-67 260.0 209 67.5
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 1.7e-67 260.0 209 69.4
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 2.2e-67 259.6 185 76.8
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 3.7e-67 258.8 176 75.6
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 6.3e-67 258.1 201 68.7
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 6.3e-67 258.1 237 61.2
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 1.4e-66 256.9 212 67.5
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 3.1e-66 255.8 214 66.4
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 4.1e-66 255.4 213 65.3
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 7.0e-66 254.6 224 66.1
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 7.0e-66 254.6 198 68.2
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 1.6e-65 253.4 209 64.1
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 2.0e-65 253.1 227 64.8
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 3.5e-65 252.3 228 61.8
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 3.5e-65 252.3 223 65.9
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 5.9e-65 251.5 194 71.6
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 7.7e-65 251.1 208 66.3
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 7.7e-65 251.1 212 65.6
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 1.7e-64 250.0 174 74.1
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 2.2e-64 249.6 211 64.0
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 2.9e-64 249.2 216 64.4
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 2.9e-64 249.2 211 64.5
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 3.8e-64 248.8 214 65.9
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 3.8e-64 248.8 224 64.7
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 3.8e-64 248.8 218 63.8
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 3.8e-64 248.8 224 64.7
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 3.8e-64 248.8 207 66.2
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 1.1e-63 247.3 209 65.6
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 1.1e-63 247.3 211 63.5
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 1.5e-63 246.9 201 68.7
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 1.9e-63 246.5 211 65.9
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 1.9e-63 246.5 229 62.0
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 2.5e-63 246.1 210 69.5
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 3.2e-63 245.7 208 65.9
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 3.2e-63 245.7 212 66.5
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 4.2e-63 245.4 224 62.5
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 4.2e-63 245.4 224 62.5
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 5.5e-63 245.0 201 65.7
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 1.2e-62 243.8 217 63.6
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 1.6e-62 243.4 208 67.8
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 1.6e-62 243.4 220 64.5
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 1.6e-62 243.4 184 73.9
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 3.6e-62 242.3 202 66.3
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 6.1e-62 241.5 217 63.1
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 1.8e-61 240.0 205 64.4
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 3.0e-61 239.2 153 83.0
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 2.6e-60 236.1 173 74.0
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 2.6e-60 236.1 192 66.7
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 5.7e-60 235.0 159 76.7
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 7.5e-60 234.6 220 60.9
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 1.4e-58 230.3 163 75.5
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 3.1e-58 229.2 163 74.8
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 4.1e-58 228.8 192 65.6
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 1.0e-56 224.2 212 59.4
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 1.3e-56 223.8 193 65.8
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 1.7e-56 223.4 183 69.4
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 6.5e-56 221.5 197 65.0
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 1.5e-55 220.3 206 60.7
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 1.5e-55 220.3 163 74.8
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 3.2e-55 219.2 205 61.0
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 7.2e-55 218.0 186 66.1
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 9.4e-55 217.6 138 78.3
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 2.1e-54 216.5 200 62.5
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 7.5e-52 208.0 136 80.9
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 1.3e-51 207.2 187 64.2
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 2.2e-51 206.5 186 62.9
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 8.0e-46 188.0 129 74.4
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 1.8e-45 186.8 191 55.0
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 1.3e-43 180.6 212 54.2
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 2.2e-43 179.9 131 71.8
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 1.4e-42 177.2 212 55.2
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 4.1e-42 175.6 147 66.0
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 5.4e-42 175.3 128 68.0
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 2.9e-40 169.5 134 67.9
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 6.6e-40 168.3 134 65.7
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 1.6e-38 163.7 209 50.2
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 1.6e-33 147.1 151 57.6
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 1.6e-33 147.1 149 57.0
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 5.0e-32 142.1 145 53.1
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 1.9e-31 140.2 129 64.3
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 4.3e-23 112.5 75 76.0
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 9.5e-23 111.3 64 82.8
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 9.5e-23 111.3 64 82.8
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 2.9e-19 99.8 74 74.3
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 2.7e-17 93.2 70 70.0
Actinidia26581 Actinidia chinensis HOM05D005382 ORTHO05D054410 1.7e-16 90.5 133 43.6
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 1.6e-09 67.4 45 75.6


User provided reference genes

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