Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 3.8e-39 164.5 89 100.0
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 3.0e-28 128.3 89 71.9
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 7.5e-27 123.6 89 70.8
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 7.5e-27 123.6 88 68.2
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 9.7e-27 123.2 88 67.0
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 2.2e-26 122.1 88 67.0
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 4.8e-26 120.9 89 66.3
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 1.1e-25 119.8 86 67.4
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 1.4e-25 119.4 82 67.1
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 2.4e-25 118.6 89 68.5
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 2.4e-25 118.6 84 69.0
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 3.1e-25 118.2 84 70.2
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 4.1e-25 117.9 89 69.7
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 5.3e-25 117.5 89 66.3
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 5.3e-25 117.5 80 73.8
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 9.1e-25 116.7 90 66.7
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 9.1e-25 116.7 88 69.3
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 1.6e-24 115.9 67 80.6
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 1.6e-24 115.9 89 64.0
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 2.7e-24 115.2 89 67.4
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 4.5e-24 114.4 89 61.8
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 4.5e-24 114.4 89 62.9
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 4.5e-24 114.4 69 76.8
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 5.9e-24 114.0 82 64.6
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 5.9e-24 114.0 82 64.6
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 1.0e-23 113.2 89 68.5
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 1.0e-23 113.2 89 61.8
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 1.7e-23 112.5 84 70.2
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 1.7e-23 112.5 89 61.8
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 2.2e-23 112.1 92 65.2
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 3.8e-23 111.3 70 71.4
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 3.8e-23 111.3 77 66.2
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 3.8e-23 111.3 82 65.9
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 3.8e-23 111.3 82 65.9
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 5.0e-23 110.9 85 62.4
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 5.0e-23 110.9 89 60.7
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 6.5e-23 110.5 84 64.3
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 6.5e-23 110.5 82 62.2
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 6.5e-23 110.5 87 65.5
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 8.5e-23 110.2 87 65.5
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 1.1e-22 109.8 89 61.8
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 1.5e-22 109.4 94 63.8
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 1.9e-22 109.0 89 66.3
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 1.9e-22 109.0 89 61.8
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 1.9e-22 109.0 89 61.8
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 1.9e-22 109.0 89 61.8
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 1.9e-22 109.0 87 60.9
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 2.5e-22 108.6 92 67.4
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 2.5e-22 108.6 89 60.7
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 2.5e-22 108.6 76 64.5
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 2.5e-22 108.6 87 59.8
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 3.2e-22 108.2 89 62.9
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 4.2e-22 107.8 87 59.8
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 4.2e-22 107.8 80 63.8
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 7.2e-22 107.1 67 73.1
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 1.2e-21 106.3 84 60.7
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 1.2e-21 106.3 88 59.1
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 1.2e-21 106.3 85 63.5
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 1.6e-21 105.9 87 62.1
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 2.1e-21 105.5 81 66.7
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 3.6e-21 104.8 69 66.7
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 3.6e-21 104.8 92 63.0
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 4.7e-21 104.4 71 66.2
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 6.1e-21 104.0 88 61.4
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 8.0e-21 103.6 68 67.6
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 1.0e-20 103.2 85 63.5
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 1.0e-20 103.2 86 64.0
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 1.8e-20 102.4 71 66.2
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 4.4e-19 97.8 122 45.9
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 2.8e-18 95.1 101 54.5
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 4.8e-18 94.4 67 64.2
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 7.0e-17 90.5 68 61.8
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 7.0e-17 90.5 67 62.7
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 7.0e-17 90.5 89 57.3
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 9.1e-17 90.1 67 62.7
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 9.1e-17 90.1 67 62.7
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 9.1e-17 90.1 89 56.2
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 1.6e-16 89.4 87 54.0
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 3.5e-16 88.2 67 59.7
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 4.5e-16 87.8 67 59.7
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 4.5e-16 87.8 67 59.7
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 7.7e-16 87.0 66 62.1
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 7.7e-16 87.0 66 62.1
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 1.0e-15 86.7 67 59.7
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 2.9e-15 85.1 66 56.1
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 5.0e-15 84.3 71 56.3
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 1.5e-14 82.8 64 57.8
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 1.9e-14 82.4 70 55.7
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 3.3e-14 81.6 64 56.2
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 4.2e-14 81.3 67 61.2
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 4.2e-14 81.3 67 61.2
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 4.2e-14 81.3 67 61.2
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 4.2e-14 81.3 65 61.5
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 5.5e-14 80.9 64 54.7
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 9.5e-14 80.1 64 57.8
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 1.2e-13 79.7 85 51.8
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 1.6e-13 79.3 88 47.7
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 1.6e-13 79.3 61 65.6
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 1.6e-13 79.3 46 69.6
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 2.8e-13 78.6 64 53.1
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 2.8e-13 78.6 85 49.4
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 2.8e-13 78.6 91 50.5
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 4.7e-13 77.8 69 49.3
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 4.7e-13 77.8 177 32.2
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 1.0e-12 76.6 89 42.7
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 1.8e-12 75.9 68 51.5
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 2.3e-12 75.5 65 63.1
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 2.3e-12 75.5 60 58.3
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 3.0e-12 75.1 60 65.0
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 4.0e-12 74.7 64 48.4
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 6.8e-12 73.9 41 73.2
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 8.9e-12 73.6 64 54.7
SMO367G0251 Selaginella moellendorffii HOM05D010715 ORTHO05D015311 8.9e-12 73.6 57 56.1
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 1.2e-11 73.2 62 56.5
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 1.2e-11 73.2 72 48.6
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 1.5e-11 72.8 63 54.0
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 1.5e-11 72.8 60 68.3
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 2.0e-11 72.4 63 52.4
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 4.4e-11 71.2 40 67.5
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 7.5e-11 70.5 48 60.4
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 3.7e-10 68.2 58 58.6
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 8.3e-10 67.0 61 52.5
Pp3c10_10990 Physcomitrium patens HOM05D006125 ORTHO05D007404 1.4e-09 66.2 63 44.4
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 2.4e-09 65.5 44 56.8
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 2.0e-08 62.4 58 62.1
BcaB05g25217 Brassica carinata HOM05D006125 ORTHO05D007404 3.9e-07 58.2 110 36.4
Potri.004G051201 Populus trichocarpa HOM05D006125 ORTHO05D007404 3.9e-07 58.2 59 49.2
CBR_g24249 Chara braunii HOM05D006125 ORTHO05D007404 8.6e-07 57.0 65 43.1
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 1.5e-06 56.2 51 47.1


User provided reference genes

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