Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G065400 Manihot esculenta HOM05D004567 ORTHO05D005726 3.7e-312 1074.7 540 100.0
Manes.04G103500 Manihot esculenta HOM05D004567 ORTHO05D005726 8.3e-254 880.2 546 82.2
Potri.007G071000 Populus trichocarpa HOM05D004567 ORTHO05D005726 8.6e-235 817.0 541 77.1
Cfa022165 Carpinus fangiana HOM05D004567 ORTHO05D005726 1.3e-227 793.1 545 73.2
Sabra07G0059700 Salix brachista HOM05D004567 ORTHO05D005726 1.7e-227 792.7 539 75.0
TWI74G0160 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 2.5e-226 788.9 545 74.7
Gorai.012G133500 Gossypium raimondii HOM05D004567 ORTHO05D005726 4.4e-223 778.1 549 73.0
Gohir.D04G147500 Gossypium hirsutum HOM05D004567 ORTHO05D005726 4.1e-221 771.5 549 72.5
Duzib132G0874 Durio zibethinus HOM05D004567 ORTHO05D005726 2.7e-220 768.8 547 72.8
TWI53G0531 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 6.0e-220 767.7 563 71.2
Thecc.02G160600 Theobroma cacao HOM05D004567 ORTHO05D005726 7.8e-220 767.3 546 72.7
Gohir.A04G107700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.3e-219 766.5 549 71.9
Haze_02919 Corylus avellana HOM05D004567 ORTHO05D005726 1.5e-218 763.1 531 72.9
GSVIVG01012041001 Vitis vinifera HOM05D004567 ORTHO05D005726 2.8e-217 758.8 556 70.9
Ciclev10031151m.g Citrus clementina HOM05D004567 ORTHO05D005726 8.4e-214 747.3 553 70.2
Atru.chr10.1157 Acer truncatum HOM05D004567 ORTHO05D005726 1.6e-212 743.0 544 70.8
TAR369G0463 Trochodendron aralioides HOM05D004567 ORTHO05D005726 1.6e-212 743.0 552 69.9
CANSAT25G2547 Cannabis sativa HOM05D004567 ORTHO05D005726 5.2e-208 728.0 550 68.5
QL04p025799 Quercus lobata HOM05D004567 ORTHO05D005726 2.9e-206 722.2 539 68.5
Prupe.2G113700 Prunus persica HOM05D004567 ORTHO05D005726 3.8e-206 721.8 533 69.4
Lalb_Chr13g0290871 Lupinus albus HOM05D004567 ORTHO05D005726 4.9e-206 721.5 555 66.7
Hma1.2p1_1513F.1_g288000 Hydrangea macrophylla HOM05D004567 ORTHO05D005726 1.6e-204 716.5 551 67.3
Medtr8g009530 Medicago truncatula HOM05D004567 ORTHO05D005726 7.8e-204 714.1 542 66.2
MD07G1086800 Malus domestica HOM05D004567 ORTHO05D005726 1.0e-203 713.8 532 69.4
Ca_23147_v3 Cicer arietinum L. HOM05D004567 ORTHO05D005726 1.3e-203 713.4 542 65.9
Gohir.D12G137700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 3.9e-203 711.8 546 67.8
FAN03G0634 Fragaria x ananassa HOM05D004567 ORTHO05D005726 6.6e-203 711.1 533 68.7
Lj3g0010315 Lotus japonicus HOM05D004567 ORTHO05D005726 1.1e-202 710.3 545 67.3
RcHm_v2.0_Chr1g0343571 Rosa chinensis HOM05D004567 ORTHO05D005726 2.5e-202 709.1 533 68.9
FAN10G2749 Fragaria x ananassa HOM05D004567 ORTHO05D005726 4.3e-202 708.4 533 68.7
FvH4_7g08600 Fragaria vesca HOM05D004567 ORTHO05D005726 9.6e-202 707.2 535 68.4
FAN01G2992 Fragaria x ananassa HOM05D004567 ORTHO05D005726 2.8e-201 705.7 533 68.7
FAN06G1075 Fragaria x ananassa HOM05D004567 ORTHO05D005726 8.1e-201 704.1 535 68.2
Gorai.008G149200 Gossypium raimondii HOM05D004567 ORTHO05D005726 8.1e-201 704.1 548 67.3
MD02G1226800 Malus domestica HOM05D004567 ORTHO05D005726 1.1e-200 703.7 531 68.4
TPR.G17362 Trifolium pratense HOM05D004567 ORTHO05D005726 1.4e-200 703.4 542 66.4
Glyma.07G121300 Glycine max HOM05D004567 ORTHO05D005726 6.9e-200 701.0 554 64.8
Actinidia11176 Actinidia chinensis HOM05D004567 ORTHO05D005726 9.0e-200 700.7 549 67.2
FAN10G3814 Fragaria x ananassa HOM05D004567 ORTHO05D005726 9.0e-200 700.7 533 68.3
Psat4g218760 Pisum sativum HOM05D004567 ORTHO05D005726 1.5e-199 699.9 543 65.4
Phvul.010G040700 Phaseolus vulgaris HOM05D004567 ORTHO05D005726 2.2e-198 696.0 549 64.5
CsaV3_4G009100 Cucumis sativus L. HOM05D004567 ORTHO05D005726 8.4e-198 694.1 544 65.6
VMungo0331G0285 Vigna mungo HOM05D004567 ORTHO05D005726 1.9e-197 693.0 549 63.9
Sed0017461 Sechium edule HOM05D004567 ORTHO05D005726 4.2e-197 691.8 547 65.6
Dinv41785 Davidia involucrata HOM05D004567 ORTHO05D005726 2.7e-196 689.1 509 71.1
Eucgr.J00860 Eucalyptus grandis HOM05D004567 ORTHO05D005726 6.0e-196 688.0 550 65.5
MBI01_g01364_MAGBIO Magnolia biondii HOM05D004567 ORTHO05D005726 1.1e-194 683.7 556 65.6
arahy.Tifrunner.gnm1.ann1.JL30IG Arachis hypogaea HOM05D004567 ORTHO05D005726 1.9e-194 682.9 551 63.7
arahy.Tifrunner.gnm1.ann1.2EVD6N Arachis hypogaea HOM05D004567 ORTHO05D005726 4.3e-194 681.8 551 63.5
AT1G50120 Arabidopsis thaliana HOM05D004567 ORTHO05D005726 1.1e-192 677.2 544 64.5
Oeu037755.1 Olea europaea HOM05D004567 ORTHO05D005726 6.9e-192 674.5 542 64.6
CiPaw.14G015900 Carya illinoinensis HOM05D004567 ORTHO05D005726 1.2e-191 673.7 492 70.3
Cc00_g04630 Coffea canephora HOM05D004567 ORTHO05D005726 4.5e-191 671.8 538 63.9
Sopen11g010070 Solanum pennellii HOM05D004567 ORTHO05D005726 1.7e-190 669.8 546 63.0
AL1G57750 Arabidopsis lyrata HOM05D004567 ORTHO05D005726 8.4e-190 667.5 544 64.5
Nn4g22147 Nelumbo nucifera HOM05D004567 ORTHO05D005726 9.3e-189 664.1 552 64.3
THA.LOC104815215 Tarenaya hassleriana HOM05D004567 ORTHO05D005726 1.2e-188 663.7 551 63.3
PSO063G1783 Papaver somniferum HOM05D004567 ORTHO05D005726 2.1e-188 662.9 544 64.2
EL10Ac9g22943 Beta vulgaris HOM05D004567 ORTHO05D005726 2.3e-187 659.4 555 61.1
DCAR_011423 Daucus carota HOM05D004567 ORTHO05D005726 1.1e-186 657.1 539 63.3
Sp1g37000 Schrenkiella parvula HOM05D004567 ORTHO05D005726 1.1e-186 657.1 545 63.3
AUR62017692 Chenopodium quinoa HOM05D004567 ORTHO05D005726 1.5e-186 656.8 571 60.9
Migut.N03351 Erythranthe guttata HOM05D004567 ORTHO05D005726 1.9e-186 656.4 541 64.1
Ah.01g012240 Amaranthus hybridus HOM05D004567 ORTHO05D005726 7.4e-186 654.4 545 61.7
Thhalv10011376m.g Eutrema salsugineum HOM05D004567 ORTHO05D005726 1.6e-185 653.3 545 62.6
PSO832G3127 Papaver somniferum HOM05D004567 ORTHO05D005726 8.2e-185 651.0 544 63.4
Peaxi162Scf01013g00124 Petunia axillaris HOM05D004567 ORTHO05D005726 1.4e-184 650.2 503 66.2
Glyma.03G102500 Glycine max HOM05D004567 ORTHO05D005726 1.8e-184 649.8 553 62.7
CSS0021756 Camellia sinensis var. sinensis HOM05D004567 ORTHO05D005726 2.4e-184 649.4 556 63.3
Carub.0001s3927 Capsella rubella HOM05D004567 ORTHO05D005726 2.9e-182 642.5 549 62.1
Gohir.A12G134100 Gossypium hirsutum HOM05D004567 ORTHO05D005726 3.8e-182 642.1 546 63.2
CARHR040180 Cardamine hirsuta HOM05D004567 ORTHO05D005726 1.4e-181 640.2 544 61.4
vmacro12414 Vaccinium macrocarpon HOM05D004567 ORTHO05D005726 1.6e-180 636.7 692 53.2
SGA_v2.0_scaffold24G10556 Striga asiatica HOM05D004567 ORTHO05D005726 3.0e-179 632.5 542 60.5
PSO339G1936 Papaver somniferum HOM05D004567 ORTHO05D005726 6.7e-179 631.3 547 62.0
Aa31LG10G4020 Aethionema arabicum HOM05D004567 ORTHO05D005726 8.7e-179 630.9 569 59.2
SalBow7G4790 Salvia bowleyana HOM05D004567 ORTHO05D005726 1.1e-178 630.6 550 60.5
BolC3t21263H Brassica oleracea HOM05D004567 ORTHO05D005726 4.3e-178 628.6 553 62.0
A08p03320 Brassica napus HOM05D004567 ORTHO05D005726 1.3e-177 627.1 551 61.3
Aqoxy7G00425 Aquilegia oxysepala HOM05D004567 ORTHO05D005726 2.2e-177 626.3 564 59.8
BcaB04g17271 Brassica carinata HOM05D004567 ORTHO05D005726 4.8e-177 625.2 553 62.0
C03p89490 Brassica napus HOM05D004567 ORTHO05D005726 6.3e-177 624.8 553 61.7
Lsat_1_v5_gn_5_37660 Lactuca sativa HOM05D004567 ORTHO05D005726 2.4e-176 622.9 542 60.9
Lj7A481G48 Lonicera japonica HOM05D004567 ORTHO05D005726 1.0e-174 617.5 553 62.6
ECA246G0539 Erigeron canadensis HOM05D004567 ORTHO05D005726 2.9e-174 615.9 535 59.6
BolC6t35627H Brassica oleracea HOM05D004567 ORTHO05D005726 6.5e-174 614.8 547 60.3
BraA06t23544Z Brassica rapa HOM05D004567 ORTHO05D005726 1.4e-173 613.6 547 60.0
BcaC08g43196 Brassica carinata HOM05D004567 ORTHO05D005726 2.7e-172 609.4 547 60.0
BraA08t32365Z Brassica rapa HOM05D004567 ORTHO05D005726 3.6e-172 609.0 592 56.6
Duzib052G0538 Durio zibethinus HOM05D004567 ORTHO05D005726 5.1e-171 605.1 542 60.7
C06p05010 Brassica napus HOM05D004567 ORTHO05D005726 6.7e-171 604.7 547 59.4
ATR0605G273 Amborella trichopoda HOM05D004567 ORTHO05D005726 1.5e-170 603.6 554 57.0
Sc11g0003400 Simmondsia chinensis HOM05D004567 ORTHO05D005726 2.8e-169 599.4 537 58.5
BcaB07g33468 Brassica carinata HOM05D004567 ORTHO05D005726 1.4e-168 597.0 550 59.6
A06p03360 Brassica napus HOM05D004567 ORTHO05D005726 2.6e-167 592.8 556 58.3
HanXRQChr12g0379741 Helianthus annuus HOM05D004567 ORTHO05D005726 7.2e-165 584.7 536 58.4
Solyc11g019960.2 Solanum lycopersicum HOM05D004567 ORTHO05D005726 5.1e-163 578.6 499 61.5
AUR62015228 Chenopodium quinoa HOM05D004567 ORTHO05D005726 3.3e-162 575.9 541 57.7
Nitab4.5_0000167g0100 Nicotiana tabacum HOM05D004567 ORTHO05D005726 3.4e-159 565.8 413 69.5
CAN.G2.11 Capsicum annuum HOM05D004567 ORTHO05D005726 3.6e-156 555.8 447 63.8
HPP92_002998 Vanilla planifolia HOM05D004567 ORTHO05D005726 5.9e-151 538.5 540 53.9
CDE02G2175 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 5.2e-147 525.4 511 56.2
Rhsim06G0125800 Rhododendron simsii HOM05D004567 ORTHO05D005726 5.2e-147 525.4 695 47.2
Nn3g16289 Nelumbo nucifera HOM05D004567 ORTHO05D005726 3.5e-143 512.7 466 59.2
CDE08G0826 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 1.0e-139 501.1 537 53.6
Cpa.g.sc0.161 Carica papaya HOM05D004567 ORTHO05D005726 2.9e-134 483.0 340 73.5
Hund24369 Selenicereus undatus HOM05D004567 ORTHO05D005726 2.0e-127 460.3 360 65.0
PGSC0003DMG401027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 8.6e-118 428.3 324 67.6
Oeu029993.1 Olea europaea HOM05D004567 ORTHO05D005726 2.9e-113 413.3 339 64.6
Nitab4.5_0004158g0010 Nicotiana tabacum HOM05D004567 ORTHO05D005726 1.1e-112 411.4 306 68.6
MELO3C018973.2 Cucumis melo HOM05D004567 ORTHO05D005726 6.0e-111 405.6 394 57.6
Os06g0618600 Oryza sativa ssp. japonica HOM05D004567 ORTHO05D005726 1.1e-101 374.8 375 54.7
A06p03590 Brassica napus HOM05D004567 ORTHO05D005726 1.2e-100 371.3 331 62.8
Mapoly0026s0045 Marchantia polymorpha HOM05D004567 ORTHO05D005726 6.2e-100 369.0 522 40.2
Pp3c20_6950 Physcomitrium patens HOM05D004567 ORTHO05D005726 5.8e-98 362.5 544 40.8
unitig_578.g16282 Utricularia gibba HOM05D004567 ORTHO05D005726 1.9e-93 347.4 359 54.9
SMO367G1304 Selaginella moellendorffii HOM05D004567 ORTHO05D005726 3.3e-93 346.7 537 39.3
Pp3c23_19720 Physcomitrium patens HOM05D004567 ORTHO05D005726 7.3e-93 345.5 510 39.2
Zm00001eb066810 Zea mays HOM05D004567 ORTHO05D005726 8.1e-92 342.0 411 48.2
AagrBONN_evm.TU.Sc2ySwM_228.3324 Anthoceros agrestis HOM05D004567 ORTHO05D005726 9.9e-90 335.1 527 37.2
ClCG10G008360 Citrullus lanatus HOM05D004567 ORTHO05D005726 1.1e-83 315.1 347 54.2
SEGI_15833 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 6.7e-78 295.8 338 48.2
BraA06t23566Z Brassica rapa HOM05D004567 ORTHO05D005726 1.2e-63 248.4 146 79.5
Cfa022169 Carpinus fangiana HOM05D004567 ORTHO05D005726 1.2e-63 248.4 132 87.9
Nitab4.5_0004158g0020 Nicotiana tabacum HOM05D004567 ORTHO05D005726 7.9e-63 245.7 199 61.3
Duzib248G1520 Durio zibethinus HOM05D004567 ORTHO05D005726 6.9e-59 232.6 134 79.9
Oeu029992.1 Olea europaea HOM05D004567 ORTHO05D005726 1.5e-58 231.5 151 72.8
C06p05100 Brassica napus HOM05D004567 ORTHO05D005726 5.9e-58 229.6 166 68.1
PGSC0003DMG402027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 6.1e-55 219.5 172 60.5
unitig_44.g31559 Utricularia gibba HOM05D004567 ORTHO05D005726 2.8e-52 210.7 140 68.6
Oeu029994.1 Olea europaea HOM05D004567 ORTHO05D005726 5.9e-50 203.0 212 54.2
ClCG10G008380 Citrullus lanatus HOM05D004567 ORTHO05D005726 1.2e-47 195.3 104 80.8
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 8.5e-41 172.6 595 25.7
Cpa.g.sc0.162 Carica papaya HOM05D004567 ORTHO05D005726 3.8e-33 147.1 107 66.4
Rhsim06G0125500 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.5e-32 144.4 156 54.5
ClCG10G008350 Citrullus lanatus HOM05D004567 ORTHO05D005726 9.4e-32 142.5 127 55.9
Rhsim04G0129600 Rhododendron simsii HOM05D004567 ORTHO05D005726 5.2e-30 136.7 99 69.7
unitig_578.g16281 Utricularia gibba HOM05D004567 ORTHO05D005726 2.2e-25 121.3 135 45.9
SHI31088 Sapria himalayana HOM05D004567 ORTHO05D005726 4.2e-24 117.1 101 59.4
FAN11G1323 Fragaria x ananassa HOM05D004567 ORTHO05D005726 5.5e-24 116.7 101 59.4
Sed0015165 Sechium edule HOM05D004567 ORTHO05D005726 7.2e-24 116.3 127 46.5
Rhsim06G0125400 Rhododendron simsii HOM05D004567 ORTHO05D005726 4.8e-20 103.6 53 83.0
Rhsim06G0125600 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.0e-18 98.2 149 40.9
Actinidia24396 Actinidia chinensis HOM05D004567 ORTHO05D005726 6.1e-15 86.7 97 48.5
QL01p003984 Quercus lobata HOM05D004567 ORTHO05D000318 8.0e-15 86.3 68 57.4
Rhsim04G0129400 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.0e-13 81.6 93 49.5
Sed0023875 Sechium edule HOM05D004567 ORTHO05D005726 4.9e-12 77.0 56 66.1
SEGI_26710 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 4.1e-11 73.9 89 42.7
TAR623G0420 Trochodendron aralioides HOM05D004567 ORTHO05D037809 7.8e-10 69.7 157 36.3
Cre06.g258400 Chlamydomonas reinhardtii HOM05D004567 ORTHO05D005726 3.3e-08 64.3 135 26.7
SEGI_29421 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 1.6e-07 62.0 73 38.4
BcaB07g33467 Brassica carinata HOM05D004567 ORTHO05D005726 2.1e-07 61.6 59 54.2
Rhsim01G0140000 Rhododendron simsii HOM05D020172 ORTHO05D018188 1.4e-06 58.9 83 44.6


User provided reference genes

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