Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G065050 Manihot esculenta HOM05D007920 ORTHO05D009993 9.8e-59 229.9 118 100.0
Potri.001G046900 Populus trichocarpa HOM05D007920 ORTHO05D009993 1.5e-38 162.9 114 72.8
Sabra01G0032500 Salix brachista HOM05D001994 ORTHO05D001954 6.2e-37 157.5 114 70.2
Thecc.06G039600 Theobroma cacao HOM05D007920 ORTHO05D009993 2.0e-35 152.5 112 68.8
Gorai.006G107000 Gossypium raimondii HOM05D007920 ORTHO05D009993 4.4e-35 151.4 112 68.8
Duzib192G0651 Durio zibethinus HOM05D007920 ORTHO05D009993 1.7e-34 149.4 111 70.3
SHI00232 Sapria himalayana HOM05D007920 ORTHO05D009993 2.9e-34 148.7 111 66.7
Gohir.D09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 2.4e-33 145.6 112 67.0
Gohir.A09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 9.2e-33 143.7 112 66.1
Ciclev10026801m.g Citrus clementina HOM05D007920 ORTHO05D009993 3.5e-32 141.7 113 69.0
Cpa.g.sc10.92 Carica papaya HOM05D007920 ORTHO05D009993 1.7e-31 139.4 114 68.4
CARHR016410 Cardamine hirsuta HOM05D007920 ORTHO05D009993 2.3e-31 139.0 122 61.5
Thhalv10009838m.g Eutrema salsugineum HOM05D007920 ORTHO05D009993 3.9e-31 138.3 119 61.3
Aa31LG7G480 Aethionema arabicum HOM05D007920 ORTHO05D009993 8.6e-31 137.1 113 63.7
TWI12G0021 Tripterygium wilfordii HOM05D007920 ORTHO05D009993 1.9e-30 136.0 112 63.4
BraA06t24364Z Brassica rapa HOM05D000537 ORTHO05D000415 5.6e-30 134.4 108 65.7
Sp1g14205 Schrenkiella parvula HOM05D007920 ORTHO05D009993 9.6e-30 133.7 111 64.9
PGR031G3888 Punica granatum HOM05D007920 ORTHO05D009993 2.1e-29 132.5 90 76.7
C05p14120 Brassica napus HOM05D000537 ORTHO05D000415 4.7e-29 131.3 108 64.8
BolC5t30143H Brassica oleracea HOM05D000537 ORTHO05D000415 4.7e-29 131.3 108 64.8
Carub.0001s1570 Capsella rubella HOM05D007920 ORTHO05D009993 1.8e-28 129.4 110 60.0
AL1G28072 Arabidopsis lyrata HOM05D007920 ORTHO05D009993 5.2e-28 127.9 111 59.5
AT1G15900 Arabidopsis thaliana HOM05D007920 ORTHO05D009993 5.2e-28 127.9 110 60.9
A06p11940 Brassica napus HOM05D000537 ORTHO05D000415 8.9e-28 127.1 108 63.0
QL05p035351 Quercus lobata HOM05D007920 ORTHO05D009993 8.9e-28 127.1 97 68.0
Cfa000225 Carpinus fangiana HOM05D007920 ORTHO05D009993 5.8e-27 124.4 102 64.7
Prupe.3G096700 Prunus persica HOM05D007920 ORTHO05D009993 7.6e-27 124.0 93 67.7
THA.LOC104808181 Tarenaya hassleriana HOM05D007920 ORTHO05D009993 7.6e-27 124.0 111 62.2
CANSAT56G1317 Cannabis sativa HOM05D007920 ORTHO05D009993 9.9e-27 123.6 92 67.4
Lj5C79G1 Lonicera japonica HOM05D007920 ORTHO05D009993 3.8e-26 121.7 91 70.3
Sed0007883 Sechium edule HOM05D001994 ORTHO05D001954 1.9e-25 119.4 89 66.3
MELO3C017832.2 Cucumis melo HOM05D007920 ORTHO05D009993 3.2e-25 118.6 88 65.9
FAN02G0847 Fragaria x ananassa HOM05D007920 ORTHO05D009993 3.2e-25 118.6 107 57.9
FAN09G3519 Fragaria x ananassa HOM05D007920 ORTHO05D009993 3.2e-25 118.6 111 57.7
RcHm_v2.0_Chr2g0133221 Rosa chinensis HOM05D007920 ORTHO05D009993 3.2e-25 118.6 107 58.9
CiPaw.01G253600 Carya illinoinensis HOM05D007920 ORTHO05D009993 4.2e-25 118.2 88 68.2
FAN05G5030 Fragaria x ananassa HOM05D007920 ORTHO05D009993 7.1e-25 117.5 111 56.8
ClCG00G003920 Citrullus lanatus HOM05D007920 ORTHO05D009993 1.2e-24 116.7 89 65.2
ClCG07G012110 Citrullus lanatus HOM05D007920 ORTHO05D009993 1.2e-24 116.7 89 65.2
CsaV3_4G002040 Cucumis sativus L. HOM05D001994 ORTHO05D001954 1.6e-24 116.3 88 65.9
MD17G1221700 Malus domestica HOM05D007920 ORTHO05D009993 2.1e-24 115.9 88 68.2
FvH4_6g28800 Fragaria vesca HOM05D007920 ORTHO05D009993 7.8e-24 114.0 107 56.1
Sopen03g035960 Solanum pennellii HOM05D007920 ORTHO05D009993 7.8e-24 114.0 91 65.9
Hma1.2p1_0109F.1_g052370 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 1.0e-23 113.6 91 63.7
PGSC0003DMG400014190 Solanum tuberosum HOM05D007920 ORTHO05D009993 1.0e-23 113.6 91 64.8
Medtr2g104930 Medicago truncatula HOM05D007920 ORTHO05D009993 1.1e-22 110.2 90 60.0
Sc12g0008420 Simmondsia chinensis HOM05D007920 ORTHO05D009993 1.5e-22 109.8 105 57.1
Lalb_Chr24g0395321 Lupinus albus HOM05D007920 ORTHO05D009993 1.9e-22 109.4 90 63.3
SalBow6G4591 Salvia bowleyana HOM05D007920 ORTHO05D009993 1.9e-22 109.4 109 56.0
TAR383G1062 Trochodendron aralioides HOM05D007920 ORTHO05D009993 1.9e-22 109.4 91 59.3
Rhsim12G0188100 Rhododendron simsii HOM05D007920 ORTHO05D009993 3.3e-22 108.6 94 60.6
Migut.D01101 Erythranthe guttata HOM05D007920 ORTHO05D009993 4.3e-22 108.2 105 57.1
Nitab4.5_0001454g0110 Nicotiana tabacum HOM05D001080 ORTHO05D009993 4.3e-22 108.2 97 57.7
Glyma.15G004000 Glycine max HOM05D007920 ORTHO05D009993 5.6e-22 107.8 95 58.9
SalBow6G6899 Salvia bowleyana HOM05D007920 ORTHO05D009993 9.6e-22 107.1 86 64.0
Lj3g0004979 Lotus japonicus HOM05D007920 ORTHO05D009993 1.6e-21 106.3 90 60.0
Nitab4.5_0012943g0020 Nicotiana tabacum HOM05D007920 ORTHO05D009993 1.6e-21 106.3 93 60.2
Lalb_Chr14g0374051 Lupinus albus HOM05D007920 ORTHO05D009993 6.2e-21 104.4 90 63.3
Ca_01022_v3 Cicer arietinum L. HOM05D007920 ORTHO05D009993 8.1e-21 104.0 88 56.8
Oeu060125.1 Olea europaea HOM05D007920 ORTHO05D009993 8.1e-21 104.0 88 60.2
Actinidia36878 Actinidia chinensis HOM05D007920 ORTHO05D009993 1.1e-20 103.6 91 58.2
CSS0007854 Camellia sinensis var. sinensis HOM05D007920 ORTHO05D009993 1.4e-20 103.2 87 60.9
Psat5g304800 Pisum sativum HOM05D007920 ORTHO05D009993 4.0e-20 101.7 88 58.0
arahy.Tifrunner.gnm1.ann1.D8WECR Arachis hypogaea HOM05D007920 ORTHO05D009993 5.3e-20 101.3 90 58.9
Nn8g39812 Nelumbo nucifera HOM05D007920 ORTHO05D009993 5.3e-20 101.3 90 57.8
SGA_v2.0_scaffold117G32314 Striga asiatica HOM05D007920 ORTHO05D009993 9.0e-20 100.5 88 58.0
MSTRG.9407 Avicennia marina HOM05D007920 ORTHO05D009993 1.2e-19 100.1 95 60.0
Cc04_g04970 Coffea canephora HOM05D007920 ORTHO05D009993 1.2e-19 100.1 86 62.8
COL.COLO4_26676 Corchorus olitorius HOM05D007920 ORTHO05D009993 2.6e-19 99.0 85 63.5
VMungo1080G1626 Vigna mungo HOM05D007920 ORTHO05D009993 2.6e-19 99.0 88 61.4
HanXRQChr09g0274501 Helianthus annuus HOM05D007920 ORTHO05D009993 5.8e-19 97.8 88 56.8
Lsat_1_v5_gn_4_87000 Lactuca sativa HOM05D007920 ORTHO05D009993 1.3e-18 96.7 88 59.1
ATR0559G078 Amborella trichopoda HOM05D007920 ORTHO05D009993 1.7e-18 96.3 104 52.9
ECA232G4957 Erigeron canadensis HOM05D007920 ORTHO05D009993 3.8e-18 95.1 91 56.0
Phvul.005G182500 Phaseolus vulgaris HOM05D007920 ORTHO05D009993 6.4e-18 94.4 88 58.0
HanXRQChr05g0154421 Helianthus annuus HOM05D007920 ORTHO05D009993 8.4e-18 94.0 88 55.7
FAN14G5942 Fragaria x ananassa HOM05D007920 ORTHO05D009993 1.2e-16 90.1 108 46.3
Aqoxy7G03460 Aquilegia oxysepala HOM05D007920 ORTHO05D009993 4.6e-16 88.2 91 51.6
HPP92_000037 Vanilla planifolia HOM05D001122 ORTHO05D001877 6.0e-16 87.8 103 46.6
unitig_736.g22804 Utricularia gibba HOM05D000537 ORTHO05D000776 1.8e-15 86.3 90 51.1
Sc02g0006940 Simmondsia chinensis HOM05D007920 ORTHO05D009993 3.3e-14 82.0 83 55.4
Zm00001eb278260 Zea mays HOM05D007920 ORTHO05D009993 2.8e-13 79.0 83 53.0
Ah.01g006840 Amaranthus hybridus HOM05D007920 ORTHO05D009993 4.8e-13 78.2 87 47.1
TPR.G36324 Trifolium pratense HOM05D007920 ORTHO05D009993 2.9e-10 68.9 76 51.3
Mapoly0046s0029 Marchantia polymorpha HOM05D007920 ORTHO05D009993 4.2e-09 65.1 82 46.3
MD16G1196200 Malus domestica HOM05D007920 ORTHO05D009993 1.6e-08 63.2 81 46.9
SEGI_11378 Sequoiadendron giganteum HOM05D007920 ORTHO05D009993 2.1e-08 62.8 110 39.1


User provided reference genes

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