Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G060400 Manihot esculenta HOM05D005560 ORTHO05D006862 3.8e-58 228.0 120 100.0
Manes.11G109500 Manihot esculenta HOM05D005560 ORTHO05D006862 3.9e-55 218.0 120 94.2
Dinv15139 Davidia involucrata HOM05D005560 ORTHO05D006862 2.7e-48 195.3 119 82.4
Nn3g21792 Nelumbo nucifera HOM05D005560 ORTHO05D006862 4.6e-48 194.5 119 79.8
Prupe.1G113300 Prunus persica HOM05D005560 ORTHO05D006862 1.4e-47 193.0 119 82.4
Medtr2g033590 Medicago truncatula HOM05D005560 ORTHO05D006862 8.8e-47 190.3 119 78.2
Medtr2g097970 Medicago truncatula HOM05D005560 ORTHO05D006862 1.1e-46 189.9 119 77.3
Dinv44258 Davidia involucrata HOM05D005560 ORTHO05D006862 2.0e-46 189.1 119 79.0
Glyma.15G138200 Glycine max HOM05D005560 ORTHO05D006862 2.0e-46 189.1 118 78.8
Potri.008G102200 Populus trichocarpa HOM05D005560 ORTHO05D006862 2.5e-46 188.7 119 79.0
Lj6g0013029 Lotus japonicus HOM05D005560 ORTHO05D006862 3.3e-46 188.3 118 78.0
Lalb_Chr18g0058561 Lupinus albus HOM05D005560 ORTHO05D006862 5.7e-46 187.6 119 76.5
Ca_00962_v3 Cicer arietinum L. HOM05D005560 ORTHO05D006862 7.4e-46 187.2 118 77.1
VMungo0540G1255 Vigna mungo HOM05D005560 ORTHO05D006862 9.7e-46 186.8 116 79.3
FAN12G4019 Fragaria x ananassa HOM05D005560 ORTHO05D006862 1.7e-45 186.0 119 78.2
Nitab4.5_0012592g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 1.7e-45 186.0 119 79.0
Phvul.006G120000 Phaseolus vulgaris HOM05D005560 ORTHO05D006862 2.2e-45 185.7 116 78.4
TPR.G33875 Trifolium pratense HOM05D005560 ORTHO05D006862 2.8e-45 185.3 115 78.3
Lalb_Chr20g0120691 Lupinus albus HOM05D005560 ORTHO05D006862 3.7e-45 184.9 119 75.6
Solyc01g058280.4 Solanum lycopersicum HOM05D005560 ORTHO05D006862 8.2e-45 183.7 119 77.3
Sopen01g023770 Solanum pennellii HOM05D005560 ORTHO05D006862 8.2e-45 183.7 119 77.3
TWI09G0868 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 8.2e-45 183.7 119 79.8
FAN07G2916 Fragaria x ananassa HOM05D005560 ORTHO05D006862 1.4e-44 183.0 119 76.5
Peaxi162Scf00228g00733 Petunia axillaris HOM05D005560 ORTHO05D006862 2.4e-44 182.2 119 77.3
Sc13g0007210 Simmondsia chinensis HOM05D005560 ORTHO05D006862 2.4e-44 182.2 119 77.3
TPR.G30159 Trifolium pratense HOM05D005560 ORTHO05D006862 2.4e-44 182.2 112 78.6
RcHm_v2.0_Chr4g0425981 Rosa chinensis HOM05D005560 ORTHO05D006862 4.1e-44 181.4 120 76.7
GSVIVG01034955001 Vitis vinifera HOM05D001281 ORTHO05D001139 5.3e-44 181.0 119 79.8
FvH4_4g20620 Fragaria vesca HOM05D005560 ORTHO05D006862 6.9e-44 180.6 119 76.5
Lj6E694T0 Lonicera japonica HOM05D005560 ORTHO05D006862 6.9e-44 180.6 119 78.2
MD16G1149600 Malus domestica HOM05D005560 ORTHO05D006862 9.1e-44 180.3 114 79.8
CDE06G0356 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 1.5e-43 179.5 117 76.1
Atru.chr4.3063 Acer truncatum HOM05D005560 ORTHO05D006862 2.6e-43 178.7 119 79.0
CAN.G938.2 Capsicum annuum HOM05D005560 ORTHO05D006862 2.6e-43 178.7 119 75.6
Cpa.g.sc9.16 Carica papaya HOM05D005560 ORTHO05D006862 2.6e-43 178.7 119 77.3
MD13G1149300 Malus domestica HOM05D005560 ORTHO05D006862 2.6e-43 178.7 114 79.8
Sed0008051 Sechium edule HOM05D005560 ORTHO05D006862 3.4e-43 178.3 115 80.0
Duzib212G0918 Durio zibethinus HOM05D005560 ORTHO05D006862 4.5e-43 177.9 119 76.5
Gohir.A02G055900 Gossypium hirsutum HOM05D005560 ORTHO05D006862 5.9e-43 177.6 119 76.5
Gohir.D02G061100 Gossypium hirsutum HOM05D005560 ORTHO05D006862 5.9e-43 177.6 119 76.5
CiPaw.01G134900 Carya illinoinensis HOM05D005560 ORTHO05D006862 7.7e-43 177.2 120 75.8
Gohir.A10G174500 Gossypium hirsutum HOM05D005560 ORTHO05D006862 2.2e-42 175.6 119 73.9
Potri.010G148600 Populus trichocarpa HOM05D005560 ORTHO05D006862 2.2e-42 175.6 119 75.6
TAR371G1140 Trochodendron aralioides HOM05D005560 ORTHO05D006862 2.2e-42 175.6 112 77.7
vmacro09713 Vaccinium macrocarpon HOM05D005560 ORTHO05D006862 2.9e-42 175.3 119 74.8
THA.LOC104827102 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 3.8e-42 174.9 119 72.3
CANSAT78G0499 Cannabis sativa HOM05D005560 ORTHO05D006862 8.5e-42 173.7 119 73.1
Cc06_g13180 Coffea canephora HOM05D005560 ORTHO05D006862 8.5e-42 173.7 119 73.1
Glyma.17G036700 Glycine max HOM05D005560 ORTHO05D006862 8.5e-42 173.7 119 73.1
PSO782G0665 Papaver somniferum HOM05D005560 ORTHO05D006862 8.5e-42 173.7 112 78.6
PSO063G2615 Papaver somniferum HOM05D005560 ORTHO05D006862 1.1e-41 173.3 112 77.7
QL06p012974 Quercus lobata HOM05D005560 ORTHO05D006862 1.9e-41 172.6 112 75.9
CiPaw.02G072600 Carya illinoinensis HOM05D005560 ORTHO05D006862 5.5e-41 171.0 112 79.5
Sabra10G0114700 Salix brachista HOM05D005560 ORTHO05D006862 5.5e-41 171.0 112 75.0
COL.COLO4_34571 Corchorus olitorius HOM05D005560 ORTHO05D006862 7.2e-41 170.6 112 75.0
ECA246G4816 Erigeron canadensis HOM05D005560 ORTHO05D006862 1.6e-40 169.5 112 75.9
CSS0010593 Camellia sinensis var. sinensis HOM05D005560 ORTHO05D006862 4.7e-40 167.9 112 73.2
arahy.Tifrunner.gnm1.ann1.JWH7Q7 Arachis hypogaea HOM05D005560 ORTHO05D006862 6.1e-40 167.5 109 72.5
CsaV3_1G038810 Cucumis sativus L. HOM05D005560 ORTHO05D006862 7.9e-40 167.2 120 73.3
THA.LOC104818873 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 7.9e-40 167.2 119 68.9
PGSC0003DMG401029058 Solanum tuberosum HOM05D005560 ORTHO05D006862 1.0e-39 166.8 112 74.1
Gohir.D10G181000 Gossypium hirsutum HOM05D005560 ORTHO05D006862 1.4e-39 166.4 119 72.3
CARHR287970 Cardamine hirsuta HOM05D005560 ORTHO05D006862 1.8e-39 166.0 114 71.9
Ciclev10006078m.g Citrus clementina HOM05D005560 ORTHO05D006862 2.3e-39 165.6 109 79.8
Gorai.005G068700 Gossypium raimondii HOM05D005560 ORTHO05D006862 8.8e-39 163.7 144 63.2
SEGI_13216 Sequoiadendron giganteum HOM05D005560 ORTHO05D006862 1.1e-38 163.3 111 71.2
Thhalv10005160m.g Eutrema salsugineum HOM05D005560 ORTHO05D006862 1.5e-38 162.9 114 71.1
Nn8g38759 Nelumbo nucifera HOM05D005560 ORTHO05D006862 2.0e-38 162.5 107 74.8
BcaC04g23733 Brassica carinata HOM05D005560 ORTHO05D006862 2.6e-38 162.2 114 70.2
HanXRQChr01g0022341 Helianthus annuus HOM05D005560 ORTHO05D006862 2.6e-38 162.2 99 79.8
Sp2g19850 Schrenkiella parvula HOM05D005560 ORTHO05D006862 2.6e-38 162.2 114 71.1
AL8G23330 Arabidopsis lyrata HOM05D005560 ORTHO05D006862 5.7e-38 161.0 114 70.2
MSTRG.3846 Avicennia marina HOM05D005560 ORTHO05D006862 5.7e-38 161.0 118 66.9
BcaB04g19617 Brassica carinata HOM05D005560 ORTHO05D006862 5.7e-38 161.0 114 70.2
A09p04870 Brassica napus HOM05D005560 ORTHO05D006862 5.7e-38 161.0 114 70.2
PGR004G2070 Punica granatum HOM05D005560 ORTHO05D006862 5.7e-38 161.0 119 73.1
CAN.G1860.1 Capsicum annuum HOM05D005560 ORTHO05D006862 7.4e-38 160.6 112 72.3
C09p05260 Brassica napus HOM05D005560 ORTHO05D006862 9.7e-38 160.2 118 67.8
BolC9t53453H Brassica oleracea HOM05D005560 ORTHO05D006862 9.7e-38 160.2 118 67.8
Gorai.011G202500 Gossypium raimondii HOM05D005560 ORTHO05D006862 9.7e-38 160.2 119 70.6
Carub.0008s0942 Capsella rubella HOM05D005560 ORTHO05D006862 1.7e-37 159.5 114 69.3
AT5G49540 Arabidopsis thaliana HOM05D005560 ORTHO05D006862 2.8e-37 158.7 114 69.3
Glyma.09G033400 Glycine max HOM05D005560 ORTHO05D006862 3.7e-37 158.3 111 73.0
Haze_01347 Corylus avellana HOM05D005560 ORTHO05D006862 4.8e-37 157.9 102 79.4
Hma1.2p1_1400F.1_g280950 Hydrangea macrophylla HOM05D005560 ORTHO05D006862 4.8e-37 157.9 102 79.4
A06p38280 Brassica napus HOM05D005560 ORTHO05D006862 6.3e-37 157.5 115 70.4
CAN.G484.71 Capsicum annuum HOM05D005560 ORTHO05D006862 8.2e-37 157.1 118 69.5
MELO3C015305.2 Cucumis melo HOM05D005560 ORTHO05D006862 8.2e-37 157.1 113 72.6
Hund11992 Selenicereus undatus HOM05D005560 ORTHO05D006862 8.2e-37 157.1 103 76.7
Migut.G00039 Erythranthe guttata HOM05D005560 ORTHO05D006862 1.1e-36 156.8 111 68.5
Oeu048287.1 Olea europaea HOM05D005560 ORTHO05D006862 7.0e-36 154.1 109 66.1
Psat0s5068g0040 Pisum sativum HOM05D005560 ORTHO05D006862 1.5e-35 152.9 101 71.3
Aqoxy5G02923 Aquilegia oxysepala HOM05D005560 ORTHO05D006862 3.5e-35 151.8 111 71.2
arahy.Tifrunner.gnm1.ann1.K4HITJ Arachis hypogaea HOM05D005560 ORTHO05D006862 3.5e-35 151.8 101 71.3
Zm00001eb295100 Zea mays HOM05D005560 ORTHO05D006862 4.5e-35 151.4 105 71.4
MBI10_g06741_MAGBIO Magnolia biondii HOM05D005560 ORTHO05D006862 5.9e-35 151.0 101 73.3
Aa31LG11G8340 Aethionema arabicum HOM05D005560 ORTHO05D006862 7.7e-35 150.6 107 70.1
Zm00001eb343110 Zea mays HOM05D005560 ORTHO05D006862 7.7e-35 150.6 105 70.5
Ah.13g071490 Amaranthus hybridus HOM05D005560 ORTHO05D006862 1.3e-34 149.8 111 69.4
DCAR_026978 Daucus carota HOM05D005560 ORTHO05D006862 1.3e-34 149.8 102 76.5
Nitab4.5_0002561g0080 Nicotiana tabacum HOM05D005560 ORTHO05D006862 1.3e-34 149.8 102 73.5
EL10Ac3g05546 Beta vulgaris HOM05D005560 ORTHO05D006862 1.7e-34 149.4 109 67.9
CDE07G1301 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 1.7e-34 149.4 89 80.9
HPP92_015326 Vanilla planifolia HOM05D005560 ORTHO05D006862 1.4e-33 146.4 102 70.6
BraA09t36124Z Brassica rapa HOM05D005560 ORTHO05D006862 2.5e-33 145.6 109 65.1
SGA_v2.0_scaffold157G37338 Striga asiatica HOM05D005560 ORTHO05D006862 2.5e-33 145.6 108 65.7
HanXRQChr10g0310551 Helianthus annuus HOM05D005560 ORTHO05D006862 3.2e-33 145.2 89 78.7
Thecc.04G305600 Theobroma cacao HOM05D005560 ORTHO05D006862 3.2e-33 145.2 108 71.3
unitig_37.g12416 Utricularia gibba HOM05D005560 ORTHO05D007484 4.2e-33 144.8 106 67.0
TWI53G0383 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 1.2e-32 143.3 102 74.5
Lsat_1_v5_gn_6_116081 Lactuca sativa HOM05D005560 ORTHO05D006862 2.1e-32 142.5 102 73.5
ClCG03G017390 Citrullus lanatus HOM05D005560 ORTHO05D006862 2.7e-32 142.1 103 71.8
BolC7t44528H Brassica oleracea HOM05D005560 ORTHO05D006862 3.6e-32 141.7 110 64.5
Sed0013449 Sechium edule HOM05D005560 ORTHO05D006862 4.7e-32 141.4 103 70.9
AUR62016242 Chenopodium quinoa HOM05D005560 ORTHO05D006862 1.8e-31 139.4 80 82.5
ATR0598G271 Amborella trichopoda HOM05D005560 ORTHO05D006862 2.3e-31 139.0 103 68.0
QL02p001630 Quercus lobata HOM05D005560 ORTHO05D006862 3.0e-31 138.7 90 77.8
Mapoly0008s0274 Marchantia polymorpha HOM05D005560 ORTHO05D006862 7.4e-30 134.0 111 57.7
Lsat_1_v5_gn_3_139661 Lactuca sativa HOM05D005560 ORTHO05D006862 9.7e-30 133.7 99 71.7
SalBow8G4800 Salvia bowleyana HOM05D005560 ORTHO05D006862 1.7e-29 132.9 101 62.4
Eucgr.F02752 Eucalyptus grandis HOM05D005560 ORTHO05D006862 8.2e-29 130.6 123 58.5
BraA06t26743Z Brassica rapa HOM05D005560 ORTHO05D006862 2.4e-28 129.0 103 65.0
AagrBONN_evm.TU.Sc2ySwM_362.2649 Anthoceros agrestis HOM05D005560 ORTHO05D006862 1.6e-27 126.3 103 60.2
Migut.O00585 Erythranthe guttata HOM05D005560 ORTHO05D006862 2.6e-27 125.6 101 61.4
SMO117G0178 Selaginella moellendorffii HOM05D005560 ORTHO05D006862 2.2e-26 122.5 101 56.4
AagrBONN_evm.TU.Sc2ySwM_340.65 Anthoceros agrestis HOM05D005560 ORTHO05D006862 8.0e-24 114.0 93 61.3
AUR62032779 Chenopodium quinoa HOM05D005560 ORTHO05D006862 5.2e-23 111.3 75 74.7
CBR_g22909 Chara braunii HOM05D005560 ORTHO05D006862 2.6e-22 109.0 111 48.6
Nitab4.5_0008521g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 2.2e-21 105.9 70 75.7
Oeu052158.1 Olea europaea HOM05D005560 ORTHO05D006862 8.3e-21 104.0 107 53.3
Nn8g41304 Nelumbo nucifera HOM05D005560 ORTHO05D006862 1.3e-18 96.7 62 80.6
arahy.Tifrunner.gnm1.ann1.CCFX3U Arachis hypogaea HOM05D001281 ORTHO05D001139 1.7e-18 96.3 105 54.3
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 1.5e-17 93.2 79 60.8
Nn1g07816 Nelumbo nucifera HOM05D005560 ORTHO05D006862 1.4e-15 86.7 66 65.2
PRCOL_00001634 Prasinoderma coloniale HOM05D005560 ORTHO05D006862 2.8e-13 79.0 109 41.3
arahy.Tifrunner.gnm1.ann1.NI9QGM Arachis hypogaea HOM05D005560 ORTHO05D006862 2.4e-12 75.9 81 51.9
TWI73G0491 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 2.0e-11 72.8 52 71.2
MCO06G009 Micromonas commoda HOM05D005560 ORTHO05D006862 3.6e-08 62.0 109 37.6
Cre14.g614250 Chlamydomonas reinhardtii HOM05D005560 ORTHO05D006862 6.8e-07 57.8 112 28.6


User provided reference genes

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