Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G058300 Manihot esculenta HOM05D006506 ORTHO05D007809 3.2e-142 508.4 261 100.0
TWI75G0153 Tripterygium wilfordii HOM05D006506 ORTHO05D007809 1.2e-125 453.4 258 87.6
Thecc.06G030600 Theobroma cacao HOM05D006506 ORTHO05D007809 4.6e-125 451.4 258 88.8
COL.COLO4_11906 Corchorus olitorius HOM05D006506 ORTHO05D007809 4.3e-123 444.9 258 87.2
Prupe.3G090200 Prunus persica HOM05D006506 ORTHO05D007809 2.1e-122 442.6 258 85.7
Cfa001948 Carpinus fangiana HOM05D006506 ORTHO05D007809 8.1e-122 440.7 258 85.7
CsaV3_7G032300 Cucumis sativus L. HOM05D006506 ORTHO05D007809 8.1e-122 440.7 258 86.0
Duzib160G0645 Durio zibethinus HOM05D006506 ORTHO05D007809 8.1e-122 440.7 258 85.7
Duzib160G0598 Durio zibethinus HOM05D006506 ORTHO05D007809 1.8e-121 439.5 258 85.7
MD17G1214300 Malus domestica HOM05D006506 ORTHO05D007809 4.0e-121 438.3 258 84.5
Haze_13452 Corylus avellana HOM05D006506 ORTHO05D007809 5.2e-121 438.0 258 84.9
MELO3C023430.2 Cucumis melo HOM05D006506 ORTHO05D007809 6.8e-121 437.6 258 86.0
Sed0005275 Sechium edule HOM05D006506 ORTHO05D007809 6.8e-121 437.6 258 85.3
CiPaw.01G249400 Carya illinoinensis HOM05D006506 ORTHO05D007809 1.2e-120 436.8 258 85.3
Ciclev10026100m.g Citrus clementina HOM05D006506 ORTHO05D007809 7.6e-120 434.1 258 84.9
Gohir.D06G120300 Gossypium hirsutum HOM05D006506 ORTHO05D007809 2.2e-119 432.6 258 84.9
THA.LOC104818016 Tarenaya hassleriana HOM05D006506 ORTHO05D007809 2.2e-119 432.6 258 84.9
SHI11239 Sapria himalayana HOM05D006506 ORTHO05D007809 2.9e-119 432.2 261 82.4
Gohir.A06G107700 Gossypium hirsutum HOM05D006506 ORTHO05D007809 6.4e-119 431.0 258 84.5
Gorai.010G138400 Gossypium raimondii HOM05D006506 ORTHO05D007809 8.4e-119 430.6 258 84.5
CANSAT56G2592 Cannabis sativa HOM05D006506 ORTHO05D007809 5.4e-118 427.9 258 83.3
GSVIVG01017366001 Vitis vinifera HOM05D006506 ORTHO05D007809 9.3e-118 427.2 261 82.4
Cpa.g.sc67.28 Carica papaya HOM05D006506 ORTHO05D007809 1.0e-116 423.7 258 82.2
Potri.001G201700 Populus trichocarpa HOM05D006506 ORTHO05D007809 6.6e-116 421.0 259 83.4
Duzib235G0689 Durio zibethinus HOM05D006506 ORTHO05D007809 1.5e-115 419.9 260 82.7
FAN05G2665 Fragaria x ananassa HOM05D000001 ORTHO05D007809 3.3e-115 418.7 258 82.6
FAN09G0903 Fragaria x ananassa HOM05D006506 ORTHO05D007809 3.3e-115 418.7 258 82.6
RcHm_v2.0_Chr2g0134931 Rosa chinensis HOM05D006506 ORTHO05D007809 3.3e-115 418.7 258 82.6
Actinidia15748 Actinidia chinensis HOM05D006506 ORTHO05D007809 4.3e-115 418.3 264 78.4
FAN14G4998 Fragaria x ananassa HOM05D000001 ORTHO05D007809 7.3e-115 417.5 258 82.2
DCAR_021353 Daucus carota HOM05D006506 ORTHO05D007809 2.1e-114 416.0 263 80.2
FvH4_6g29440 Fragaria vesca HOM05D006506 ORTHO05D007809 2.8e-114 415.6 258 81.8
CARHR042650 Cardamine hirsuta HOM05D006506 ORTHO05D007809 4.8e-114 414.8 258 80.2
Carub.0001s4149 Capsella rubella HOM05D006506 ORTHO05D007809 6.2e-114 414.5 258 80.6
Ciclev10027493m.g Citrus clementina HOM05D006506 ORTHO05D007809 8.1e-114 414.1 258 81.8
FAN02G0099 Fragaria x ananassa HOM05D006506 ORTHO05D007809 8.1e-114 414.1 258 81.4
Aa31LG10G2470 Aethionema arabicum HOM05D006506 ORTHO05D007809 1.4e-113 413.3 258 81.0
BcaB02g10986 Brassica carinata HOM05D006506 ORTHO05D007809 1.4e-113 413.3 258 80.2
AL1G60780 Arabidopsis lyrata HOM05D006506 ORTHO05D007809 1.8e-113 412.9 258 79.8
Lj2g0016250 Lotus japonicus HOM05D006506 ORTHO05D007809 1.8e-113 412.9 259 79.2
Sabra01G0159300 Salix brachista HOM05D006506 ORTHO05D007809 2.4e-113 412.5 259 82.6
Dinv38132 Davidia involucrata HOM05D006506 ORTHO05D007809 4.0e-113 411.8 265 77.7
Sp1g39080 Schrenkiella parvula HOM05D006506 ORTHO05D007809 4.0e-113 411.8 258 79.8
AT1G52530 Arabidopsis thaliana HOM05D006506 ORTHO05D007809 5.3e-113 411.4 258 79.1
BraA05t20791Z Brassica rapa HOM05D006506 ORTHO05D007809 5.3e-113 411.4 258 79.8
Thhalv10011665m.g Eutrema salsugineum HOM05D006506 ORTHO05D007809 5.3e-113 411.4 258 79.1
A05p18940 Brassica napus HOM05D006506 ORTHO05D007809 6.9e-113 411.0 258 79.8
Ciclev10027064m.g Citrus clementina HOM05D006506 ORTHO05D007809 5.8e-112 407.9 258 80.2
Rhsim08G0211600 Rhododendron simsii HOM05D006506 ORTHO05D007809 1.3e-111 406.8 264 77.3
Ca_04862_v3 Cicer arietinum L. HOM05D006506 ORTHO05D007809 1.7e-111 406.4 258 78.3
ECA232G3059 Erigeron canadensis HOM05D006506 ORTHO05D007809 1.7e-111 406.4 260 78.1
HanXRQChr16g0500351 Helianthus annuus HOM05D006506 ORTHO05D007809 1.7e-111 406.4 261 77.4
CSS0043074 Camellia sinensis var. sinensis HOM05D006506 ORTHO05D007809 2.9e-111 405.6 264 76.5
Ciclev10027054m.g Citrus clementina HOM05D006506 ORTHO05D007809 2.9e-111 405.6 257 81.3
BcaC08g44001 Brassica carinata HOM05D006506 ORTHO05D007809 3.8e-111 405.2 258 79.5
C06p14060 Brassica napus HOM05D006506 ORTHO05D007809 1.1e-110 403.7 258 79.1
BolC6t36584H Brassica oleracea HOM05D006506 ORTHO05D007809 1.1e-110 403.7 258 79.1
CSS0005655 Camellia sinensis var. sinensis HOM05D006506 ORTHO05D007809 1.1e-110 403.7 264 76.1
vmacro19011 Vaccinium macrocarpon HOM05D006506 ORTHO05D007809 1.9e-110 402.9 261 76.2
arahy.Tifrunner.gnm1.ann1.9QS0XN Arachis hypogaea HOM05D006506 ORTHO05D007809 1.2e-109 400.2 258 76.7
Peaxi162Scf00553g00510 Petunia axillaris HOM05D006506 ORTHO05D007809 2.7e-109 399.1 265 75.1
arahy.Tifrunner.gnm1.ann1.SP1H5F Arachis hypogaea HOM05D006506 ORTHO05D007809 3.5e-109 398.7 258 76.4
CAN.G407.9 Capsicum annuum HOM05D006506 ORTHO05D007809 7.9e-109 397.5 265 74.0
PGSC0003DMG400014148 Solanum tuberosum HOM05D006506 ORTHO05D007809 7.9e-109 397.5 265 73.2
TAR371G0436 Trochodendron aralioides HOM05D006506 ORTHO05D007809 1.3e-108 396.7 258 75.2
Sopen03g036430 Solanum pennellii HOM05D006506 ORTHO05D007809 1.7e-108 396.4 265 73.2
Lsat_1_v5_gn_4_87520 Lactuca sativa HOM05D006506 ORTHO05D007809 3.9e-108 395.2 260 76.5
PGR031G2298 Punica granatum HOM05D006506 ORTHO05D007809 8.7e-108 394.0 260 76.9
PSO210G7208 Papaver somniferum HOM05D006506 ORTHO05D007809 3.3e-107 392.1 258 74.8
TPR.G16552 Trifolium pratense HOM05D006506 ORTHO05D007809 9.6e-107 390.6 258 74.8
Nitab4.5_0010868g0010 Nicotiana tabacum HOM05D006506 ORTHO05D007809 1.6e-106 389.8 265 73.2
Cc04_g04540 Coffea canephora HOM05D006506 ORTHO05D007809 2.1e-106 389.4 261 73.6
Ciclev10027407m.g Citrus clementina HOM05D006506 ORTHO05D007809 2.8e-106 389.0 258 78.3
Lalb_Chr06g0175141 Lupinus albus HOM05D006506 ORTHO05D007809 4.8e-106 388.3 263 75.7
Medtr1g082730 Medicago truncatula HOM05D006506 ORTHO05D007809 4.8e-106 388.3 258 74.8
Nitab4.5_0005461g0020 Nicotiana tabacum HOM05D006506 ORTHO05D007809 6.2e-106 387.9 265 72.8
Psat1g070040 Pisum sativum HOM05D006506 ORTHO05D007809 2.4e-105 386.0 258 74.8
VMungo0464G1487 Vigna mungo HOM05D006506 ORTHO05D007809 3.4e-104 382.1 258 74.0
Glyma.13G059800 Glycine max HOM05D006506 ORTHO05D007809 7.6e-104 380.9 258 76.0
Ciclev10027055m.g Citrus clementina HOM05D006506 ORTHO05D007809 2.9e-103 379.0 258 77.1
Phvul.004G032600 Phaseolus vulgaris HOM05D006506 ORTHO05D007809 1.4e-102 376.7 258 73.3
MBI06_g17213_MAGBIO Magnolia biondii HOM05D006506 ORTHO05D007809 6.0e-101 371.3 258 72.5
Ciclev10026188m.g Citrus clementina HOM05D006506 ORTHO05D007809 3.0e-100 369.0 258 76.0
Oeu027841.1 Olea europaea HOM05D006506 ORTHO05D007809 8.7e-100 367.5 262 70.6
Solyc03g117530.1 Solanum lycopersicum HOM05D006506 ORTHO05D007809 7.6e-96 354.4 240 72.5
MSTRG.11150 Avicennia marina HOM05D006506 ORTHO05D007809 3.8e-95 352.1 258 67.8
Lj9E498T1 Lonicera japonica HOM05D006506 ORTHO05D007809 4.2e-94 348.6 214 79.4
SalBow2G1795 Salvia bowleyana HOM05D006506 ORTHO05D007809 8.7e-92 340.9 258 64.7
ATR0605G102 Amborella trichopoda HOM05D006506 ORTHO05D007809 1.6e-90 336.7 258 65.5
unitig_62.g23595 Utricularia gibba HOM05D006506 ORTHO05D007809 2.8e-90 335.9 258 64.3
SGA_v2.0_scaffold37G14756 Striga asiatica HOM05D006506 ORTHO05D007809 3.7e-90 335.5 258 63.6
HPP92_007331 Vanilla planifolia HOM05D006506 ORTHO05D007809 5.3e-89 331.6 258 64.3
Aqoxy7G02198 Aquilegia oxysepala HOM05D006506 ORTHO05D007809 6.9e-89 331.3 233 70.4
SEGI_33428 Sequoiadendron giganteum HOM05D006506 ORTHO05D007809 8.7e-84 314.3 259 60.2
AagrBONN_evm.TU.Sc2ySwM_117.4079 Anthoceros agrestis HOM05D006506 ORTHO05D007809 2.5e-83 312.8 258 59.7
Migut.I00752 Erythranthe guttata HOM05D006506 ORTHO05D007809 2.5e-83 312.8 230 65.7
Ah.08g214330 Amaranthus hybridus HOM05D006506 ORTHO05D007809 7.4e-83 311.2 230 65.7
CDE08G0717 Ceratophyllum demersum HOM05D006506 ORTHO05D007809 1.5e-80 303.5 215 68.8
Os04g0528400 Oryza sativa ssp. japonica HOM05D006506 ORTHO05D007809 2.6e-80 302.8 265 55.5
AUR62030047 Chenopodium quinoa HOM05D006506 ORTHO05D007809 1.3e-79 300.4 230 64.3
EL10Ac7g17638 Beta vulgaris HOM05D006506 ORTHO05D007809 4.2e-78 295.4 220 66.4
Atru.chr1.2888 Acer truncatum HOM05D006506 ORTHO05D007809 9.4e-78 294.3 192 80.2
Pp3c1_24880 Physcomitrium patens HOM05D006506 ORTHO05D007809 9.4e-78 294.3 258 57.4
SMO115G0207 Selaginella moellendorffii HOM05D006506 ORTHO05D007809 2.5e-75 286.2 259 54.8
Sc05g0005410 Simmondsia chinensis HOM05D006506 ORTHO05D007809 3.3e-75 285.8 228 61.0
Mapoly0090s0026 Marchantia polymorpha HOM05D006506 ORTHO05D007809 2.2e-74 283.1 258 55.4
HPP92_007333 Vanilla planifolia HOM05D006506 ORTHO05D007809 2.0e-72 276.6 258 58.1
Ciclev10027056m.g Citrus clementina HOM05D006506 ORTHO05D007809 1.1e-70 270.8 258 60.1
AUR62002633 Chenopodium quinoa HOM05D006506 ORTHO05D007809 2.3e-68 263.1 205 63.4
Zm00001eb427100 Zea mays HOM05D006506 ORTHO05D007809 1.1e-65 254.2 265 49.8
CBR_g8656 Chara braunii HOM05D006506 ORTHO05D007809 1.4e-65 253.8 262 50.4
CDE11G1201 Ceratophyllum demersum HOM05D006506 ORTHO05D007809 2.4e-57 226.5 225 54.7
Prupe.2G072500 Prunus persica HOM05D006506 ORTHO05D007809 2.8e-37 159.8 233 42.9
Ciclev10027644m.g Citrus clementina HOM05D006506 ORTHO05D007809 8.9e-36 154.8 104 72.1
Cre12.g524350 Chlamydomonas reinhardtii HOM05D006506 ORTHO05D007809 1.7e-34 150.6 262 36.6
SMO018G0003 Selaginella moellendorffii HOM05D006506 ORTHO05D007809 3.3e-30 136.3 113 57.5
Ciclev10026990m.g Citrus clementina HOM05D006506 ORTHO05D007809 1.0e-28 131.3 104 65.4
ATR0068G037 Amborella trichopoda HOM05D006506 ORTHO05D007809 1.8e-28 130.6 112 57.1
MBI08_g32097_MAGBIO Magnolia biondii HOM05D006506 ORTHO05D007809 3.9e-23 112.8 72 79.2
PRCOL_00003381 Prasinoderma coloniale HOM05D006506 ORTHO05D007809 8.1e-21 105.1 253 31.6
TPR.G26194 Trifolium pratense HOM05D002479 ORTHO05D007809 3.2e-17 93.2 66 72.7
MCO05G139 Micromonas commoda HOM05D006506 ORTHO05D007809 1.0e-15 88.2 275 27.6
Solyc04g026070.1 Solanum lycopersicum HOM05D006506 ORTHO05D007809 1.2e-11 74.7 58 62.1
Solyc08g044480.1 Solanum lycopersicum HOM05D006506 ORTHO05D007809 4.6e-08 62.8 78 43.6


User provided reference genes

Program Settings