Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G057000 Manihot esculenta HOM05D005464 ORTHO05D006803 9.2e-215 750.0 387 100.0
TWI12G0099 Tripterygium wilfordii HOM05D005464 ORTHO05D006803 5.0e-144 515.0 364 71.2
Atru.chr1.2934 Acer truncatum HOM05D005464 ORTHO05D006803 2.5e-143 512.7 378 70.4
COL.COLO4_11947 Corchorus olitorius HOM05D005464 ORTHO05D006803 4.2e-143 511.9 366 71.9
Eucgr.J03066 Eucalyptus grandis HOM05D005464 ORTHO05D006803 1.0e-141 507.3 356 74.4
Cfa001959 Carpinus fangiana HOM05D005464 ORTHO05D006803 2.6e-140 502.7 367 72.2
RcHm_v2.0_Chr2g0135251 Rosa chinensis HOM05D005464 ORTHO05D006803 1.3e-139 500.4 376 68.6
PGR031G2541 Punica granatum HOM05D005464 ORTHO05D006803 2.8e-139 499.2 379 68.9
Lj3g0027830 Lotus japonicus HOM05D005464 ORTHO05D006803 1.8e-138 496.5 368 68.8
Haze_16562 Corylus avellana HOM05D005464 ORTHO05D006803 4.1e-138 495.4 389 68.6
FAN05G5161 Fragaria x ananassa HOM05D005464 ORTHO05D006803 5.4e-138 495.0 367 68.4
FvH4_6g29660 Fragaria vesca HOM05D005464 ORTHO05D006803 4.5e-137 491.9 367 68.4
MD17G1212300 Malus domestica HOM05D005464 ORTHO05D006803 7.7e-137 491.1 393 65.6
CANSAT56G0380 Cannabis sativa HOM05D005464 ORTHO05D006803 1.0e-136 490.7 394 67.3
CiPaw.02G157400 Carya illinoinensis HOM05D005464 ORTHO05D006803 3.8e-136 488.8 350 75.4
Gohir.A05G123300 Gossypium hirsutum HOM05D005464 ORTHO05D006803 1.9e-135 486.5 356 69.7
FAN09G2673 Fragaria x ananassa HOM05D005464 ORTHO05D006803 5.5e-135 485.0 377 66.6
Gorai.009G128200 Gossypium raimondii HOM05D005464 ORTHO05D006803 5.5e-135 485.0 356 69.4
Glyma.15G007300 Glycine max HOM05D005464 ORTHO05D006803 6.1e-134 481.5 384 64.8
Lalb_Chr14g0373811 Lupinus albus HOM05D005464 ORTHO05D006803 8.0e-134 481.1 383 63.4
Prupe.3G087600 Prunus persica HOM05D005464 ORTHO05D006803 1.4e-133 480.3 367 68.7
TPR.G37199 Trifolium pratense HOM05D005464 ORTHO05D006803 1.4e-133 480.3 396 61.9
Phvul.005G178300 Phaseolus vulgaris HOM05D005464 ORTHO05D006803 6.8e-133 478.0 367 66.5
Glyma.13G365800 Glycine max HOM05D005464 ORTHO05D006803 1.2e-132 477.2 387 64.3
Medtr2g103910 Medicago truncatula HOM05D005464 ORTHO05D006803 1.2e-132 477.2 372 64.0
GSVIVG01017342001 Vitis vinifera HOM05D005464 ORTHO05D006803 4.4e-132 475.3 359 70.5
VMungo1080G0510 Vigna mungo HOM05D005464 ORTHO05D006803 7.5e-132 474.6 363 65.8
FAN14G5059 Fragaria x ananassa HOM05D005464 ORTHO05D006803 1.3e-131 473.8 408 61.8
Thecc.06G025100 Theobroma cacao HOM05D000467 ORTHO05D000379 1.3e-131 473.8 366 66.7
Psat5g302720 Pisum sativum HOM05D005464 ORTHO05D006803 1.1e-130 470.7 366 63.9
Ca_01055_v3 Cicer arietinum L. HOM05D005464 ORTHO05D006803 5.4e-130 468.4 364 64.6
Actinidia15983 Actinidia chinensis HOM05D005464 ORTHO05D006803 7.0e-130 468.0 361 66.5
Gohir.D05G124200 Gossypium hirsutum HOM05D005464 ORTHO05D006803 2.0e-129 466.5 356 67.7
DCAR_021346 Daucus carota HOM05D005464 ORTHO05D006803 6.6e-128 461.5 380 63.7
Aqoxy7G02293 Aquilegia oxysepala HOM05D005464 ORTHO05D006803 4.3e-127 458.8 358 64.5
Lalb_Chr22g0350841 Lupinus albus HOM05D005464 ORTHO05D006803 7.3e-127 458.0 371 63.3
Cpa.g.sc10.270 Carica papaya HOM05D005464 ORTHO05D006803 1.2e-126 457.2 357 68.1
Lsat_1_v5_gn_4_89921 Lactuca sativa HOM05D005464 ORTHO05D006803 1.6e-126 456.8 361 66.5
Eucgr.F03878 Eucalyptus grandis HOM05D005464 ORTHO05D006803 1.0e-125 454.1 371 63.9
ECA232G3027 Erigeron canadensis HOM05D005464 ORTHO05D006803 1.5e-124 450.3 383 63.2
Sed0012798 Sechium edule HOM05D005464 ORTHO05D006803 1.5e-124 450.3 371 65.2
CsaV3_4G001710 Cucumis sativus L. HOM05D005464 ORTHO05D006803 2.0e-124 449.9 383 62.1
Nn8g39510 Nelumbo nucifera HOM05D005464 ORTHO05D006803 2.0e-124 449.9 370 64.9
HanXRQChr16g0500301 Helianthus annuus HOM05D005464 ORTHO05D006803 4.4e-124 448.7 380 63.2
Rhsim12G0191100 Rhododendron simsii HOM05D005464 ORTHO05D006803 7.5e-124 448.0 362 66.9
ClCG07G012450 Citrullus lanatus HOM05D005464 ORTHO05D006803 3.2e-122 442.6 364 65.7
MELO3C017863.2 Cucumis melo HOM05D005464 ORTHO05D006803 9.2e-122 441.0 356 66.0
PSO017G6540 Papaver somniferum HOM05D005464 ORTHO05D006803 1.2e-121 440.7 368 62.0
PSO170G0224 Papaver somniferum HOM05D005464 ORTHO05D006803 3.9e-120 435.6 370 61.1
Dinv30606 Davidia involucrata HOM05D005464 ORTHO05D006803 8.6e-120 434.5 376 62.0
EL10Ac9g21898 Beta vulgaris HOM05D005464 ORTHO05D006803 1.2e-118 430.6 361 62.6
Nitab4.5_0000373g0080 Nicotiana tabacum HOM05D005464 ORTHO05D006803 3.6e-118 429.1 368 62.0
THA.LOC104812511 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 1.1e-117 427.6 364 62.9
AT1G15330 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 1.4e-117 427.2 364 60.7
Migut.I00762 Erythranthe guttata HOM05D005464 ORTHO05D006803 2.3e-117 426.4 372 59.1
MSTRG.22747 Avicennia marina HOM05D005464 ORTHO05D006803 3.1e-117 426.0 366 60.7
Nitab4.5_0006769g0010 Nicotiana tabacum HOM05D005464 ORTHO05D006803 3.1e-117 426.0 365 61.1
PGR102G0885 Punica granatum HOM05D005464 ORTHO05D006803 4.0e-117 425.6 358 60.1
Hund06557 Selenicereus undatus HOM05D005464 ORTHO05D006803 2.0e-116 423.3 355 61.7
AUR62016335 Chenopodium quinoa HOM05D005464 ORTHO05D006803 2.6e-116 422.9 355 60.8
SGA_v2.0_scaffold5G02698 Striga asiatica HOM05D005464 ORTHO05D006803 2.6e-116 422.9 386 57.5
CAN.G1503.8 Capsicum annuum HOM05D005464 ORTHO05D006803 7.5e-116 421.4 362 61.0
MBI14_g16402_MAGBIO Magnolia biondii HOM05D005464 ORTHO05D006803 7.5e-116 421.4 363 63.1
Sp1g13650 Schrenkiella parvula HOM05D005464 ORTHO05D006803 7.5e-116 421.4 365 60.3
Solyc06g068160.3 Solanum lycopersicum HOM05D005464 ORTHO05D006803 1.7e-115 420.2 355 61.7
BolC5t30083H Brassica oleracea HOM05D005464 ORTHO05D006803 3.7e-115 419.1 365 60.3
Sopen06g025430 Solanum pennellii HOM05D005464 ORTHO05D006803 4.9e-115 418.7 355 61.7
A06p11340 Brassica napus HOM05D005464 ORTHO05D006803 6.4e-115 418.3 365 60.0
BraA06t24313Z Brassica rapa HOM05D005464 ORTHO05D006803 6.4e-115 418.3 365 60.0
PGSC0003DMG400028509 Solanum tuberosum HOM05D005464 ORTHO05D006803 1.1e-114 417.5 356 61.5
C05p13460 Brassica napus HOM05D005464 ORTHO05D006803 1.9e-114 416.8 365 60.0
Carub.0001s1508 Capsella rubella HOM05D005464 ORTHO05D006803 1.9e-114 416.8 360 60.3
AL1G27420 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 2.4e-114 416.4 368 59.5
arahy.Tifrunner.gnm1.ann1.JVJR89 Arachis hypogaea HOM05D005464 ORTHO05D006803 3.2e-114 416.0 368 60.1
arahy.Tifrunner.gnm1.ann1.Y6ZEHB Arachis hypogaea HOM05D005464 ORTHO05D006803 3.2e-114 416.0 368 60.1
BcaC05g25470 Brassica carinata HOM05D005464 ORTHO05D006803 3.2e-114 416.0 364 60.4
Peaxi162Scf00207g00638 Petunia axillaris HOM05D005464 ORTHO05D006803 3.5e-113 412.5 359 61.6
Aa31LG7G100 Aethionema arabicum HOM05D005464 ORTHO05D006803 1.3e-112 410.6 359 61.0
SHI11227 Sapria himalayana HOM05D005464 ORTHO05D006803 3.0e-112 409.5 368 59.2
THA.LOC104812509 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 3.0e-112 409.5 371 59.3
CARHR015860 Cardamine hirsuta HOM05D005464 ORTHO05D006803 1.1e-111 407.5 365 57.5
vmacro16896 Vaccinium macrocarpon HOM05D005464 ORTHO05D006803 2.5e-111 406.4 392 58.4
AT1G80090 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 3.3e-111 406.0 357 59.1
Duzib160G0683 Durio zibethinus HOM05D005464 ORTHO05D006803 4.3e-111 405.6 303 68.6
Thhalv10008048m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 2.1e-110 403.3 365 58.4
unitig_0.g1114 Utricularia gibba HOM05D005464 ORTHO05D006803 5.8e-108 395.2 352 58.2
AUR62011516 Chenopodium quinoa HOM05D005464 ORTHO05D006803 9.9e-108 394.4 329 61.4
BcaC08g47570 Brassica carinata HOM05D005464 ORTHO05D006803 2.2e-107 393.3 367 57.2
C06p54250 Brassica napus HOM05D005464 ORTHO05D006803 2.2e-107 393.3 367 57.2
BolC6t40438H Brassica oleracea HOM05D005464 ORTHO05D006803 2.2e-107 393.3 367 57.2
Thhalv10019455m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 2.2e-107 393.3 355 58.6
BcaB02g08721 Brassica carinata HOM05D005464 ORTHO05D006803 6.4e-107 391.7 362 57.2
A07p45420 Brassica napus HOM05D005464 ORTHO05D006803 1.1e-106 391.0 367 56.7
Sp5g35710 Schrenkiella parvula HOM05D005464 ORTHO05D006803 6.6e-104 381.7 322 60.6
CARHR074410 Cardamine hirsuta HOM05D005464 ORTHO05D006803 5.6e-103 378.6 322 60.6
ATR0800G035 Amborella trichopoda HOM05D005464 ORTHO05D006803 1.2e-102 377.5 359 57.1
Zm00001eb232620 Zea mays HOM05D005464 ORTHO05D006803 1.4e-101 374.0 389 52.4
Ciclev10026304m.g Citrus clementina HOM05D005464 ORTHO05D006803 4.9e-99 365.5 248 75.8
Os02g0158900 Oryza sativa ssp. japonica HOM05D005464 ORTHO05D006803 1.4e-98 364.0 377 52.5
HPP92_016981 Vanilla planifolia HOM05D005464 ORTHO05D006803 1.4e-98 364.0 351 55.0
BraA07t32046Z Brassica rapa HOM05D005464 ORTHO05D006803 6.0e-97 358.6 367 54.2
Carub.0002s2743 Capsella rubella HOM05D005464 ORTHO05D006803 8.4e-91 338.2 302 57.6
SMO201G0050 Selaginella moellendorffii HOM05D005464 ORTHO05D006803 5.4e-82 308.9 363 46.6
Mapoly0007s0086 Marchantia polymorpha HOM05D005464 ORTHO05D006803 9.3e-82 308.1 355 45.9
Pp3c3_23830 Physcomitrium patens HOM05D005464 ORTHO05D006803 1.2e-81 307.8 355 46.5
QL05p029765 Quercus lobata HOM05D005464 ORTHO05D006803 1.2e-81 307.8 230 71.7
QL05p030112 Quercus lobata HOM05D005464 ORTHO05D006803 1.2e-81 307.8 230 71.7
Aa31LG4G370 Aethionema arabicum HOM05D005464 ORTHO05D006803 5.6e-79 298.9 299 51.2
Oeu045134.1 Olea europaea HOM05D005464 ORTHO05D006803 2.8e-78 296.6 252 63.5
Atru.chr1.2936 Acer truncatum HOM05D005464 ORTHO05D006803 1.8e-72 277.3 229 63.8
Nn2g12091 Nelumbo nucifera HOM05D000467 ORTHO05D000379 6.5e-67 258.8 232 59.5
Lj9P500T36 Lonicera japonica HOM05D005464 ORTHO05D006803 2.7e-65 253.4 228 61.0
AagrBONN_evm.TU.Sc2ySwM_368.1642 Anthoceros agrestis HOM05D005464 ORTHO05D006803 6.3e-62 242.3 346 39.6
PGR102G1999 Punica granatum HOM05D005464 ORTHO05D006803 2.0e-60 237.3 297 46.1
Sc06g0005910 Simmondsia chinensis HOM05D005464 ORTHO05D006803 2.2e-54 217.2 214 52.3
AagrBONN_evm.TU.Sc2ySwM_344.2189 Anthoceros agrestis HOM05D005464 ORTHO05D006803 2.2e-51 207.2 234 46.6
HPP92_010901 Vanilla planifolia HOM05D005464 ORTHO05D006803 5.5e-50 202.6 223 48.4
Sc06g0005900 Simmondsia chinensis HOM05D005464 ORTHO05D006803 7.9e-49 198.7 131 74.8
Cc04_g04410 Coffea canephora HOM05D005464 ORTHO05D006803 1.0e-48 198.4 285 46.0
Hma1.2p1_1144F.1_g261310 Hydrangea macrophylla HOM05D005464 ORTHO05D006803 1.4e-48 198.0 212 53.3
CSS0011845 Camellia sinensis var. sinensis HOM05D005464 ORTHO05D006803 3.0e-48 196.8 141 70.2
CSS0036664 Camellia sinensis var. sinensis HOM05D005464 ORTHO05D006803 3.9e-48 196.4 141 70.2
TAR383G0924 Trochodendron aralioides HOM05D005464 ORTHO05D006803 3.9e-48 196.4 128 79.7
VMungo1127G1748 Vigna mungo HOM05D005464 ORTHO05D006803 5.1e-48 196.1 204 52.0
CBR_g24374 Chara braunii HOM05D005464 ORTHO05D006803 5.9e-44 182.6 336 32.7
BcaC05g25495 Brassica carinata HOM05D005464 ORTHO05D006803 6.5e-43 179.1 181 53.0
Pp3c13_16980 Physcomitrium patens HOM05D005464 ORTHO05D006803 3.6e-41 173.3 229 42.8
AL2G41450 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 6.3e-38 162.5 141 61.0
Psat1g035880 Pisum sativum HOM05D005464 ORTHO05D006803 3.2e-34 150.2 104 70.2
TAR383G0332 Trochodendron aralioides HOM05D005464 ORTHO05D006803 3.7e-30 136.7 116 58.6
SEGI_27934 Sequoiadendron giganteum HOM05D005464 ORTHO05D006803 7.0e-29 132.5 288 30.9
AL2G41440 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 5.9e-28 129.4 129 51.9
Psat6g000160 Pisum sativum HOM05D005464 ORTHO05D006803 1.1e-26 125.2 137 48.9
QL05p029759 Quercus lobata HOM05D005464 ORTHO05D006803 5.5e-26 122.9 131 55.7
QL05p030118 Quercus lobata HOM05D005464 ORTHO05D006803 5.5e-26 122.9 131 55.7
SEGI_39315 Sequoiadendron giganteum HOM05D005464 ORTHO05D006803 1.3e-19 101.7 113 50.4
CBR_g38673 Chara braunii HOM05D005464 ORTHO05D006803 3.0e-16 90.5 256 29.3
Psat6g211360 Pisum sativum HOM05D005464 ORTHO05D006803 2.7e-12 77.4 122 39.3
Nn1g00750 Nelumbo nucifera HOM05D005464 ORTHO05D006803 1.3e-11 75.1 92 48.9
Mapoly0030s0135 Marchantia polymorpha HOM05D005426 ORTHO05D006996 2.9e-11 73.9 399 25.1
vmacro09542 Vaccinium macrocarpon HOM05D002177 ORTHO05D002257 5.0e-11 73.2 402 22.1
unitig_0.g2046 Utricularia gibba HOM05D002177 ORTHO05D002257 6.6e-11 72.8 405 22.5
Medtr2g103890 Medicago truncatula HOM05D005464 ORTHO05D006803 3.3e-10 70.5 87 43.7
Cc05_g12330 Coffea canephora HOM05D002177 ORTHO05D002257 4.3e-10 70.1 408 21.1
HPP92_022218 Vanilla planifolia HOM05D002177 ORTHO05D002257 2.8e-09 67.4 414 21.7
unitig_747.g21570 Utricularia gibba HOM05D002177 ORTHO05D002257 4.7e-09 66.6 396 20.7
Actinidia18760 Actinidia chinensis HOM05D002177 ORTHO05D002257 6.1e-09 66.2 397 22.7
SEGI_22479 Sequoiadendron giganteum HOM05D005426 ORTHO05D006996 8.0e-09 65.9 295 25.4
Atru.chr2.2731 Acer truncatum HOM05D002177 ORTHO05D002257 1.4e-08 65.1 343 21.9
HPP92_022220 Vanilla planifolia HOM05D002177 ORTHO05D002257 1.4e-08 65.1 414 21.7
BraA01t01814Z Brassica rapa HOM05D002177 ORTHO05D002257 1.8e-08 64.7 348 21.8
A01p18640 Brassica napus HOM05D002177 ORTHO05D002257 2.3e-08 64.3 349 22.1
Gohir.D05G358760 Gossypium hirsutum HOM05D002177 ORTHO05D002257 2.3e-08 64.3 304 23.7
ECA236G1049 Erigeron canadensis HOM05D002177 ORTHO05D002257 3.1e-08 63.9 423 21.7
TWI38G1374 Tripterygium wilfordii HOM05D002177 ORTHO05D002257 3.1e-08 63.9 415 20.5
BolC1t02311H Brassica oleracea HOM05D002177 ORTHO05D002257 4.0e-08 63.5 348 21.6
Thecc.07G077400 Theobroma cacao HOM05D002177 ORTHO05D002257 5.2e-08 63.2 425 21.2
Gohir.A01G065400 Gossypium hirsutum HOM05D002177 ORTHO05D002257 8.9e-08 62.4 412 21.1
C01p23650 Brassica napus HOM05D002177 ORTHO05D002257 1.5e-07 61.6 345 21.4
Gohir.D01G052800 Gossypium hirsutum HOM05D002177 ORTHO05D002257 1.5e-07 61.6 412 21.4
Gorai.002G072600 Gossypium raimondii HOM05D002177 ORTHO05D002257 2.0e-07 61.2 412 21.4
Duzib213G0974 Durio zibethinus HOM05D002177 ORTHO05D002257 3.4e-07 60.5 347 20.7
Lsat_1_v5_gn_5_8540 Lactuca sativa HOM05D002177 ORTHO05D002257 3.4e-07 60.5 429 20.5
Aqoxy4G01034 Aquilegia oxysepala HOM05D002177 ORTHO05D002257 4.4e-07 60.1 350 18.9
Haze_09471 Corylus avellana HOM05D002177 ORTHO05D002257 4.4e-07 60.1 332 19.0
Carub.0008s1405 Capsella rubella HOM05D002177 ORTHO05D002257 5.8e-07 59.7 364 20.3
Dinv08313 Davidia involucrata HOM05D002177 ORTHO05D002257 5.8e-07 59.7 424 22.6
Gohir.D05G358780 Gossypium hirsutum HOM05D002177 ORTHO05D002257 5.8e-07 59.7 346 21.4
Gorai.009G434500 Gossypium raimondii HOM05D002177 ORTHO05D002257 5.8e-07 59.7 346 21.4
Gohir.A04G028404 Gossypium hirsutum HOM05D002177 ORTHO05D002257 7.5e-07 59.3 334 21.3
Hma1.2p1_0148F.1_g066210 Hydrangea macrophylla HOM05D002177 ORTHO05D002257 9.8e-07 58.9 417 21.1
Rhsim08G0189400 Rhododendron simsii HOM05D001741 ORTHO05D002196 9.8e-07 58.9 359 22.3
Cfa020550 Carpinus fangiana HOM05D002177 ORTHO05D002257 1.3e-06 58.5 407 19.9
PSO210G4310 Papaver somniferum HOM05D002177 ORTHO05D002257 1.3e-06 58.5 335 21.2
MCO15G016 Micromonas commoda HOM05D014937 ORTHO05D016224 1.7e-06 58.2 195 27.7
arahy.Tifrunner.gnm1.ann1.3V0V2N Arachis hypogaea HOM05D002177 ORTHO05D002257 2.2e-06 57.8 415 19.0
Nn1g06602 Nelumbo nucifera HOM05D002177 ORTHO05D002257 2.2e-06 57.8 433 20.1
Carub.0007s1339 Capsella rubella HOM05D002177 ORTHO05D002257 2.9e-06 57.4 360 21.1
Peaxi162Scf00089g00622 Petunia axillaris HOM05D001741 ORTHO05D002196 4.9e-06 56.6 372 24.5
Thhalv10026939m.g Eutrema salsugineum HOM05D002177 ORTHO05D002257 6.4e-06 56.2 349 20.1


User provided reference genes

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