Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 1.8e-187 659.1 331 100.0
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 7.3e-136 487.6 332 74.4
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 4.7e-135 485.0 330 74.8
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 7.8e-130 467.6 331 70.4
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.2e-125 453.8 331 67.7
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 3.8e-124 448.7 330 69.4
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 9.3e-123 444.1 333 68.5
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 4.6e-122 441.8 331 66.8
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 1.5e-120 436.8 336 70.5
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 3.3e-120 435.6 330 66.1
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 7.4e-120 434.5 328 68.3
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 4.8e-119 431.8 329 69.3
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 2.4e-118 429.5 335 68.1
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 6.9e-118 427.9 326 68.7
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 1.5e-117 426.8 333 65.2
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 6.4e-116 421.4 328 66.5
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.4e-115 420.2 335 69.6
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 7.1e-115 417.9 335 69.3
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 2.1e-114 416.4 332 66.3
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.5e-114 415.6 332 66.0
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 4.6e-114 415.2 324 67.3
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.8e-113 413.3 335 68.4
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 3.0e-113 412.5 328 64.0
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 1.9e-112 409.8 321 67.0
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 3.3e-112 409.1 327 66.4
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 5.6e-112 408.3 327 66.7
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 1.3e-111 407.1 335 63.3
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 3.7e-111 405.6 327 65.7
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 6.2e-111 404.8 337 60.8
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.4e-110 403.7 337 60.5
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 4.0e-110 402.1 337 59.9
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 5.3e-110 401.7 340 63.5
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 5.3e-110 401.7 257 76.7
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 2.0e-109 399.8 330 62.1
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 1.3e-108 397.1 330 61.5
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.2e-108 396.4 326 65.3
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 2.9e-108 396.0 326 61.7
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 1.1e-107 394.0 320 64.7
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 1.1e-107 394.0 333 61.9
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 1.9e-107 393.3 294 69.4
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 2.5e-107 392.9 326 60.4
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 2.5e-107 392.9 336 61.9
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 4.2e-107 392.1 324 60.8
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 2.1e-106 389.8 327 63.0
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 2.1e-106 389.8 341 60.4
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 2.1e-106 389.8 330 60.3
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.5e-106 389.0 326 64.4
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 3.5e-106 389.0 325 64.9
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 1.0e-105 387.5 333 61.0
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 1.0e-105 387.5 362 60.5
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 3.9e-105 385.6 329 60.5
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 3.9e-105 385.6 331 59.8
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 5.1e-105 385.2 332 59.9
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 6.7e-105 384.8 319 60.5
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 1.1e-104 384.0 318 60.7
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 1.9e-104 383.3 322 59.6
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 2.5e-104 382.9 330 59.4
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 3.3e-104 382.5 332 59.9
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 4.3e-104 382.1 337 60.5
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.7e-104 381.7 332 63.3
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 7.4e-104 381.3 327 60.2
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 9.6e-104 380.9 301 62.8
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 1.6e-103 380.2 292 65.1
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 2.8e-103 379.4 326 59.8
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 2.8e-103 379.4 326 59.8
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 6.3e-103 378.3 333 59.2
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 1.1e-102 377.5 324 59.3
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 3.1e-102 375.9 319 61.1
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 4.1e-102 375.6 328 60.1
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 4.1e-102 375.6 323 59.4
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 4.1e-102 375.6 253 72.7
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 5.3e-102 375.2 302 62.6
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.2e-101 374.0 311 61.7
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 1.2e-101 374.0 296 63.2
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 1.5e-101 373.6 313 61.7
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 2.0e-101 373.2 331 59.5
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 1.3e-100 370.5 328 59.1
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 2.2e-100 369.8 330 57.6
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 5.0e-100 368.6 328 59.1
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 6.5e-100 368.2 331 61.0
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.9e-99 366.7 333 58.3
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 1.2e-98 364.0 328 58.8
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 1.6e-98 363.6 328 60.7
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 2.1e-98 363.2 329 56.8
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 3.5e-98 362.5 285 67.0
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 4.6e-98 362.1 322 58.1
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 1.3e-97 360.5 331 56.8
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 1.3e-97 360.5 332 56.3
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.3e-97 359.8 332 55.4
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 3.9e-97 359.0 334 57.5
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 5.1e-97 358.6 333 55.9
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 5.1e-97 358.6 334 56.0
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 6.7e-97 358.2 294 61.6
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 8.7e-97 357.8 333 55.3
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 8.7e-97 357.8 333 55.0
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 4.3e-96 355.5 330 58.2
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 1.6e-95 353.6 289 61.9
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.8e-95 352.1 333 54.7
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 8.2e-95 351.3 331 54.7
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 1.8e-94 350.1 292 63.4
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 1.8e-94 350.1 292 63.4
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 4.5e-93 345.5 295 61.4
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.7e-92 343.6 331 55.0
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 3.8e-92 342.4 320 57.2
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 1.1e-91 340.9 333 54.1
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.6e-90 337.0 330 54.5
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 7.9e-90 334.7 326 54.3
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 1.0e-89 334.3 298 58.1
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.4e-89 334.0 330 54.2
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 1.8e-89 333.6 330 53.9
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 3.0e-89 332.8 263 64.3
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.1e-89 332.0 330 53.6
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 6.7e-89 331.6 351 51.9
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 2.5e-88 329.7 283 60.1
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.3e-88 329.3 354 52.0
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 4.3e-88 328.9 348 53.2
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 4.3e-88 328.9 331 52.9
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 7.4e-88 328.2 269 64.7
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 7.4e-88 328.2 341 52.5
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.4e-86 323.9 324 52.5
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 9.1e-86 321.2 340 50.6
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 2.6e-85 319.7 337 52.8
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 4.5e-85 318.9 328 52.1
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.7e-84 317.0 319 52.7
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 2.2e-84 316.6 328 49.4
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 3.8e-84 315.8 329 50.8
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 1.4e-83 313.9 332 49.4
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 2.5e-83 313.2 330 51.2
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 3.2e-83 312.8 328 50.0
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 1.2e-82 310.8 332 50.9
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.7e-82 309.7 286 55.9
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 4.7e-82 308.9 334 49.4
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 3.3e-80 302.8 329 49.2
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 4.4e-80 302.4 333 47.7
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 5.7e-80 302.0 296 52.4
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 5.7e-80 302.0 332 48.8
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 1.3e-79 300.8 329 48.9
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 2.8e-79 299.7 331 49.2
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 8.2e-79 298.1 283 53.4
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 1.1e-78 297.7 309 50.8
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 1.1e-78 297.7 331 48.6
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 1.1e-78 297.7 325 48.9
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 1.4e-78 297.4 316 49.7
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 5.9e-77 292.0 288 53.8
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 7.7e-77 291.6 320 49.4
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 1.9e-75 287.0 326 49.7
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 1.9e-75 287.0 242 59.1
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 2.0e-72 276.9 293 50.2
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 1.7e-71 273.9 326 46.6
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 2.2e-71 273.5 291 48.5
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 5.3e-70 268.9 287 49.1
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 5.0e-68 262.3 288 49.0
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 2.5e-67 260.0 230 57.4
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 1.4e-65 254.2 233 59.7
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 5.2e-65 252.3 161 73.9
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 4.1e-62 242.7 157 74.5
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 2.0e-61 240.4 282 50.0
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 9.5e-59 231.5 176 62.5
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 2.1e-58 230.3 240 51.7
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.4e-54 216.9 131 83.2
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 5.4e-54 215.7 160 66.2
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 6.6e-52 208.8 225 51.1
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.9e-47 193.4 240 44.6
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 2.4e-46 190.3 173 53.8
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 2.3e-41 173.7 263 39.2
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 9.8e-40 168.3 233 44.6
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 1.1e-33 148.3 128 66.4
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 2.4e-30 137.1 88 73.9
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 2.8e-26 123.6 97 64.9
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.6e-26 123.2 81 75.3
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 6.4e-23 112.5 83 67.5
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 4.6e-21 106.3 80 61.2
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 4.6e-21 106.3 123 42.3
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 1.3e-20 104.8 77 68.8
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 9.3e-14 82.0 56 69.6


User provided reference genes

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