Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 0.0e+00 1379.4 733 100.0
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 1.8e-166 590.5 769 48.4
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 5.4e-155 552.4 819 44.6
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 8.8e-150 535.0 769 46.6
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 4.5e-146 522.7 548 55.5
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 1.3e-124 451.4 740 40.3
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 3.7e-124 449.9 778 39.7
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 1.4e-123 448.0 741 40.2
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 2.1e-119 434.1 759 41.4
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 7.6e-117 425.6 930 35.7
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 9.2e-115 418.7 889 35.9
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 3.5e-114 416.8 770 39.7
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 4.6e-114 416.4 761 39.0
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 3.9e-113 413.3 759 39.1
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.9e-112 411.0 770 39.6
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 2.5e-112 410.6 765 39.6
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 5.6e-112 409.5 781 38.2
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 5.6e-112 409.5 781 38.2
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 1.2e-111 408.3 853 36.7
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.9e-107 394.4 779 37.5
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 1.2e-106 391.7 730 39.0
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 6.0e-106 389.4 762 39.0
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 1.9e-104 384.4 766 40.1
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 3.3e-104 383.6 791 37.3
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 5.6e-104 382.9 867 34.9
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 4.8e-103 379.8 860 35.8
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 5.3e-102 376.3 858 34.7
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 1.2e-98 365.2 749 38.5
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 1.3e-95 355.1 798 35.8
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 1.6e-95 354.8 948 32.4
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 3.4e-93 347.1 764 36.5
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.4e-91 341.7 730 36.6
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 4.6e-90 336.7 755 35.8
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 7.9e-90 335.9 751 37.3
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 1.3e-89 335.1 735 38.1
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 5.1e-89 333.2 767 34.8
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.1e-88 332.0 730 35.8
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 1.9e-88 331.3 730 35.6
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 1.9e-88 331.3 749 35.6
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 7.4e-88 329.3 746 36.7
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 2.8e-87 327.4 763 35.9
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 1.1e-86 325.5 834 34.3
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 6.9e-86 322.8 872 33.1
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 9.0e-86 322.4 754 34.6
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 1.9e-83 314.7 768 35.0
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 4.2e-83 313.5 778 33.5
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 5.5e-83 313.2 816 32.7
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 1.2e-82 312.0 759 35.2
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 6.9e-78 296.2 767 35.2
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 2.0e-77 294.7 709 35.8
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 7.6e-77 292.7 789 32.3
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.3e-76 292.0 788 32.7
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 2.2e-76 291.2 412 45.1
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 3.2e-75 287.3 794 30.9
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 7.2e-75 286.2 962 29.6
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 1.2e-74 285.4 788 32.6
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 3.6e-74 283.9 470 38.5
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 3.6e-74 283.9 713 34.9
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 2.3e-73 281.2 767 33.8
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 2.3e-73 281.2 664 35.2
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 2.3e-73 281.2 777 32.4
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 3.0e-73 280.8 777 31.8
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 5.1e-73 280.0 763 32.4
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 5.1e-73 280.0 873 30.9
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 4.3e-72 276.9 777 32.3
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 8.2e-71 272.7 713 34.4
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 2.4e-70 271.2 766 33.2
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 9.1e-70 269.2 724 33.0
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 9.1e-70 269.2 781 31.4
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 1.5e-69 268.5 786 32.8
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 4.5e-69 266.9 713 33.0
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 4.5e-69 266.9 704 32.7
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 7.7e-69 266.2 763 31.5
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 2.2e-68 264.6 786 31.8
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 3.8e-68 263.8 741 33.1
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 6.5e-68 263.1 728 30.6
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 6.5e-68 263.1 856 29.9
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 6.5e-68 263.1 806 32.1
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 8.5e-68 262.7 564 35.1
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 8.5e-68 262.7 751 33.2
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 2.5e-67 261.2 756 32.4
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 5.5e-67 260.0 962 30.4
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 1.2e-66 258.8 739 32.3
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 1.2e-66 258.8 749 31.1
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 1.6e-66 258.5 960 29.0
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 2.0e-64 251.5 741 29.6
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 2.2e-63 248.1 754 31.0
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 3.1e-62 244.2 743 29.3
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 5.3e-62 243.4 532 35.5
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 3.4e-61 240.7 818 30.7
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 4.5e-61 240.4 766 30.0
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 5.0e-60 236.9 768 30.3
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 1.1e-59 235.7 809 30.7
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 3.2e-59 234.2 822 30.5
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 5.5e-59 233.4 598 33.6
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 3.6e-58 230.7 773 30.8
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 4.7e-58 230.3 760 32.5
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 8.0e-58 229.6 763 29.2
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 8.0e-58 229.6 810 28.1
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 1.4e-57 228.8 758 30.7
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 2.3e-57 228.0 813 28.5
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 5.2e-57 226.9 758 29.9
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 5.7e-56 223.4 792 29.2
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 7.4e-56 223.0 943 27.4
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 4.5e-53 213.8 968 26.2
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 7.7e-53 213.0 767 29.1
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 7.7e-53 213.0 768 29.9
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 8.5e-52 209.5 770 27.5
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 1.5e-51 208.8 647 31.8
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 5.5e-51 206.8 590 33.6
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 1.6e-50 205.3 689 29.6
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 1.5e-48 198.7 742 27.4
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 1.7e-47 195.3 768 27.3
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 1.7e-47 195.3 571 30.5
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 3.1e-46 191.0 826 27.7
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 7.0e-46 189.9 696 28.0
Duzib192G1036 Durio zibethinus HOM05D004831 ORTHO05D003975 1.2e-45 189.1 467 33.4
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 1.6e-42 178.7 756 28.6
SHI09312 Sapria himalayana HOM05D004831 ORTHO05D003975 1.6e-37 162.2 577 28.9
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 3.3e-35 154.5 564 29.8
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 3.3e-35 154.5 786 27.4
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 7.2e-35 153.3 590 31.4
ClCG05G013830 Citrullus lanatus HOM05D004831 ORTHO05D003975 1.0e-33 149.4 416 35.1
COL.COLO4_30333 Corchorus olitorius HOM05D004831 ORTHO05D003975 3.8e-28 131.0 141 56.0
Haze_24989 Corylus avellana HOM05D004831 ORTHO05D003975 8.6e-28 129.8 180 45.0
Actinidia15827 Actinidia chinensis HOM05D004831 ORTHO05D003975 1.9e-27 128.6 322 35.1
SHI09311 Sapria himalayana HOM05D004831 ORTHO05D003975 1.9e-27 128.6 120 60.0
Os01g0617700 Oryza sativa ssp. japonica HOM05D004831 ORTHO05D003975 7.3e-27 126.7 844 22.7
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 4.7e-26 124.0 139 51.8
Aa31LG7G290 Aethionema arabicum HOM05D004831 ORTHO05D003975 7.3e-19 100.1 182 37.4
Zm00001eb358290 Zea mays HOM05D018572 ORTHO05D003975 1.2e-18 99.4 110 50.0
HPP92_017895 Vanilla planifolia HOM05D004831 ORTHO05D003975 3.6e-18 97.8 777 22.8
AagrBONN_evm.TU.Sc2ySwM_368.483__484 Anthoceros agrestis HOM05D004831 ORTHO05D003975 1.1e-17 96.3 139 43.2
MD09G1215000 Malus domestica HOM05D004831 ORTHO05D003975 1.8e-17 95.5 144 41.0
Zm00001eb159780 Zea mays HOM05D018572 ORTHO05D003975 8.9e-17 93.2 688 23.7
TPR.G24077 Trifolium pratense HOM05D004831 ORTHO05D003975 1.5e-16 92.4 110 49.1
SMO203G0255 Selaginella moellendorffii HOM05D004831 ORTHO05D003975 1.3e-15 89.4 83 51.8
Migut.I00847 Erythranthe guttata HOM05D004831 ORTHO05D003975 8.3e-15 86.7 111 46.8
Pp3c2_32580 Physcomitrium patens HOM05D004831 ORTHO05D003975 9.2e-14 83.2 125 40.8
Haze_16456 Corylus avellana HOM05D004831 ORTHO05D003975 1.7e-12 79.0 113 42.5
BcaB03g14531 Brassica carinata HOM05D004831 ORTHO05D017393 3.0e-12 78.2 230 30.9
Pp3c5_11060 Physcomitrium patens HOM05D004831 ORTHO05D003975 6.6e-12 77.0 84 47.6
SEGI_34595 Sequoiadendron giganteum HOM05D004831 ORTHO05D003975 8.6e-12 76.6 50 68.0
Mapoly0008s0161 Marchantia polymorpha HOM05D004831 ORTHO05D003975 3.6e-10 71.2 119 39.5
Cpa.g.sc10.163 Carica papaya HOM05D004831 ORTHO05D003975 1.1e-09 69.7 45 66.7


User provided reference genes

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