Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 0.0e+00 1256.9 637 100.0
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 6.7e-287 990.3 656 78.7
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 3.5e-267 924.9 644 74.4
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 1.4e-260 902.9 635 73.7
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 6.3e-245 850.9 646 69.0
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 9.1e-244 847.0 638 69.0
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 7.7e-243 844.0 646 68.4
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 1.7e-237 826.2 639 68.2
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 1.6e-235 819.7 638 67.9
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 4.5e-235 818.1 642 67.6
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 4.5e-235 818.1 617 68.4
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 5.0e-234 814.7 642 67.6
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 5.0e-234 814.7 617 68.1
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 1.5e-233 813.1 617 67.9
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 2.5e-233 812.4 634 67.7
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 7.3e-233 810.8 614 68.6
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 8.0e-232 807.4 627 66.3
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 1.0e-231 807.0 642 66.0
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 5.2e-231 804.7 627 66.3
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 7.5e-230 800.8 632 66.6
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 3.7e-229 798.5 627 65.6
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 3.5e-227 792.0 675 64.1
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 3.0e-226 788.9 674 63.8
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 8.6e-226 787.3 664 64.0
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 8.9e-223 777.3 636 65.3
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 3.7e-221 771.9 648 64.5
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 6.4e-221 771.2 560 71.8
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 2.7e-219 765.8 687 62.2
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 6.0e-219 764.6 639 63.2
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 2.3e-215 752.7 654 62.8
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 1.5e-214 750.0 642 63.2
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 2.7e-211 739.2 626 64.5
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 2.7e-211 739.2 639 63.4
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 1.3e-210 736.9 663 60.2
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 2.3e-210 736.1 663 60.2
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 3.9e-210 735.3 677 60.4
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 5.1e-210 734.9 612 65.0
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 5.1e-210 734.9 639 61.7
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 5.1e-210 734.9 635 62.8
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 3.3e-209 732.3 603 63.5
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 1.8e-207 726.5 635 60.3
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 8.9e-207 724.2 663 59.0
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 2.2e-205 719.5 673 58.1
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 1.9e-204 716.5 605 64.3
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 4.6e-203 711.8 641 61.3
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 1.1e-201 707.2 621 61.8
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 1.5e-201 706.8 637 58.9
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 1.5e-201 706.8 662 57.6
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 2.5e-201 706.1 639 61.5
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 7.3e-201 704.5 663 57.6
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 7.3e-201 704.5 610 63.4
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 1.3e-200 703.7 642 59.2
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 1.6e-200 703.4 665 58.5
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 2.1e-200 703.0 685 55.8
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 1.4e-199 700.3 644 59.8
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 1.8e-199 699.9 684 58.6
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 3.1e-199 699.1 619 62.4
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 2.2e-197 693.0 682 55.9
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 3.8e-197 692.2 631 60.9
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 1.9e-196 689.9 722 54.8
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 1.2e-195 687.2 625 60.2
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 2.7e-195 686.0 722 54.7
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 2.7e-195 686.0 642 59.2
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 7.8e-195 684.5 647 59.5
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 1.3e-194 683.7 618 59.9
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 1.7e-194 683.3 654 56.9
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 1.6e-192 676.8 663 57.0
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 3.6e-192 675.6 610 60.8
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 1.4e-191 673.7 560 65.7
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 1.8e-191 673.3 662 57.3
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 2.4e-191 672.9 618 58.1
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 4.0e-191 672.2 604 59.4
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 4.0e-191 672.2 640 58.4
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 6.9e-191 671.4 637 57.9
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 6.9e-191 671.4 664 55.3
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 2.0e-190 669.8 604 60.4
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 1.3e-189 667.2 628 57.8
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 2.9e-189 666.0 605 59.3
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 8.4e-189 664.5 607 58.2
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 7.1e-188 661.4 674 55.3
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 9.3e-188 661.0 599 58.3
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 2.7e-187 659.4 648 54.5
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 4.6e-187 658.7 645 54.9
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 6.7e-186 654.8 628 58.1
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 1.5e-185 653.7 637 56.5
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 2.5e-185 652.9 644 56.5
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 7.4e-185 651.4 647 55.0
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 9.6e-185 651.0 631 56.9
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 4.8e-184 648.7 650 56.3
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 1.4e-183 647.1 637 56.0
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 3.1e-183 646.0 635 56.5
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 6.9e-183 644.8 634 55.7
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 9.0e-183 644.4 637 56.2
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 1.2e-182 644.0 640 56.4
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 2.9e-181 639.4 599 57.3
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 3.8e-181 639.0 640 55.8
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 4.9e-181 638.6 637 56.0
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 8.4e-181 637.9 635 55.3
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 8.4e-181 637.9 676 53.6
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 1.6e-179 633.6 658 53.2
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 2.3e-178 629.8 637 55.4
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 3.3e-177 625.9 624 58.2
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.5e-174 617.1 669 53.4
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 2.5e-172 609.8 610 55.2
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 3.2e-172 609.4 633 55.0
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 7.1e-172 608.2 638 53.4
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 9.3e-172 607.8 597 55.4
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 3.9e-170 602.4 637 52.6
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 1.1e-169 600.9 621 54.9
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 4.8e-168 595.5 630 52.4
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 4.5e-166 589.0 440 65.7
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 2.2e-160 570.1 624 55.0
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 1.8e-154 550.4 588 52.2
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 2.4e-151 540.0 612 50.2
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 2.0e-150 537.0 508 55.9
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 8.5e-149 531.6 602 48.3
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 8.2e-144 515.0 441 59.2
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 5.0e-133 479.2 635 47.6
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 2.5e-132 476.9 489 53.6
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 5.0e-125 452.6 637 43.6
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 7.0e-119 432.2 653 42.0
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 2.7e-102 377.1 693 39.0
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.3e-101 374.0 714 37.3
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 2.8e-91 340.5 481 43.2
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 2.9e-88 330.5 300 57.3
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.9e-84 317.8 542 37.6
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 9.6e-84 315.5 485 39.4
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.6e-83 314.7 476 38.9
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.1e-82 312.0 438 40.2
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.4e-81 307.0 483 38.5
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.4e-81 307.0 483 38.5
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 8.4e-80 302.4 483 38.1
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 5.4e-79 299.7 507 38.1
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.6e-75 288.1 469 37.7
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 2.0e-65 254.6 382 44.0
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 8.4e-64 249.2 369 46.1
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 4.6e-62 243.4 459 42.5
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 8.7e-53 212.6 196 51.5
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.8e-42 178.3 202 53.0
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 7.0e-26 123.2 93 57.0
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 5.9e-25 120.2 282 36.5
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 3.7e-19 100.9 71 70.4
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.5e-15 88.2 207 33.3
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 1.2e-14 85.9 81 53.1
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 1.4e-10 72.4 54 57.4
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 7.0e-10 70.1 55 54.5
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 7.0e-10 70.1 55 54.5
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.6e-09 68.9 164 37.8
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 2.0e-09 68.6 54 53.7
Ah.06g184670 Amaranthus hybridus HOM05D004705 ORTHO05D005595 1.0e-08 66.2 45 68.9
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 1.7e-08 65.5 49 65.3
Ah.02g118940 Amaranthus hybridus HOM05D003112 ORTHO05D005595 8.6e-08 63.2 65 53.8
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 8.6e-08 63.2 54 50.0


User provided reference genes

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