Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G048300 Manihot esculenta HOM05D006576 ORTHO05D008644 0.0e+00 1366.3 655 100.0
Thecc.08G024000 Theobroma cacao HOM05D006576 ORTHO05D008644 0.0e+00 1188.7 644 87.0
Gorai.002G129100 Gossypium raimondii HOM05D006576 ORTHO05D008644 0.0e+00 1181.4 646 85.8
Gohir.D01G105100 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1174.1 641 85.8
Ciclev10003149m.g Citrus clementina HOM05D006576 ORTHO05D008644 0.0e+00 1173.3 651 84.6
Gohir.A01G116700 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1171.0 646 85.0
MD15G1029800 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1166.4 651 83.6
Glyma.06G033200 Glycine max HOM05D006576 ORTHO05D008644 0.0e+00 1166.0 651 83.7
TAR381G1568 Trochodendron aralioides HOM05D006576 ORTHO05D008644 0.0e+00 1164.8 651 83.1
RcHm_v2.0_Chr6g0300731 Rosa chinensis HOM05D006576 ORTHO05D008644 0.0e+00 1163.3 649 83.4
Potri.014G180700 Populus trichocarpa HOM05D006576 ORTHO05D008644 0.0e+00 1161.7 654 84.1
Lalb_Chr11g0062371 Lupinus albus HOM05D006576 ORTHO05D008644 0.0e+00 1160.6 651 83.1
Cpa.g.sc64.67 Carica papaya HOM05D006576 ORTHO05D008644 0.0e+00 1160.2 642 83.8
QL02p007885 Quercus lobata HOM05D006576 ORTHO05D008644 0.0e+00 1160.2 689 80.8
FvH4_2g40020 Fragaria vesca HOM05D006576 ORTHO05D008644 0.0e+00 1158.7 649 82.7
MD08G1033200 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1157.5 651 83.1
Sabra14G0140900 Salix brachista HOM05D006576 ORTHO05D008644 0.0e+00 1154.0 654 83.3
TWI12G0537 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 0.0e+00 1151.3 651 83.9
TWI36G0276 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 0.0e+00 1150.6 651 84.0
Lj1g0002309 Lotus japonicus HOM05D006576 ORTHO05D008644 0.0e+00 1147.9 651 81.9
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 0.0e+00 1145.6 646 82.2
Phvul.009G056900 Phaseolus vulgaris HOM05D006576 ORTHO05D008644 0.0e+00 1145.2 646 82.4
Atru.chr13.516 Acer truncatum HOM05D006576 ORTHO05D008644 0.0e+00 1142.5 652 83.3
Prupe.1G381700 Prunus persica HOM05D006576 ORTHO05D008644 0.0e+00 1142.5 651 82.3
FAN27G3021 Fragaria x ananassa HOM05D006576 ORTHO05D008644 0.0e+00 1139.8 649 81.7
Atru.BG.235.p Acer truncatum HOM05D006576 ORTHO05D008644 0.0e+00 1137.9 636 85.4
COL.COLO4_26345 Corchorus olitorius HOM05D006576 ORTHO05D008644 0.0e+00 1132.9 641 83.2
Medtr3g111730 Medicago truncatula HOM05D006576 ORTHO05D008644 0.0e+00 1132.9 651 80.6
arahy.Tifrunner.gnm1.ann1.N2LUF1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1129.4 651 80.5
CiPaw.16G055000 Carya illinoinensis HOM05D006576 ORTHO05D008644 0.0e+00 1129.4 638 82.9
arahy.Tifrunner.gnm1.ann1.G51JN1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1128.2 651 80.6
Hma1.2p1_0203F.1_g086540 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 0.0e+00 1128.2 646 80.3
ClCG05G019150 Citrullus lanatus HOM05D006576 ORTHO05D008644 0.0e+00 1119.0 646 81.1
CsaV3_3G044990 Cucumis sativus L. HOM05D006576 ORTHO05D008644 0.0e+00 1119.0 651 80.5
MELO3C003867.2 Cucumis melo HOM05D006576 ORTHO05D008644 0.0e+00 1118.2 651 80.5
Rhsim06G0035200 Rhododendron simsii HOM05D006576 ORTHO05D008644 0.0e+00 1115.9 680 77.5
Sed0024937 Sechium edule HOM05D006576 ORTHO05D008644 0.0e+00 1109.7 651 80.5
HanXRQChr04g0105541 Helianthus annuus HOM05D006576 ORTHO05D008644 0.0e+00 1108.2 650 79.1
CSS0022363 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 0.0e+00 1107.8 724 73.9
Cc10_g03100 Coffea canephora HOM05D006576 ORTHO05D008644 0.0e+00 1106.3 643 77.9
Ca_15522_v3 Cicer arietinum L. HOM05D006576 ORTHO05D008644 0.0e+00 1105.9 643 80.2
GSVIVG01009681001 Vitis vinifera HOM05D006576 ORTHO05D008644 0.0e+00 1103.6 641 80.8
MSTRG.25158 Avicennia marina HOM05D006576 ORTHO05D008644 0.0e+00 1100.5 651 78.0
Peaxi162Scf00690g00125 Petunia axillaris HOM05D006576 ORTHO05D008644 0.0e+00 1099.7 651 78.2
Nn1g05071 Nelumbo nucifera HOM05D006576 ORTHO05D008644 0.0e+00 1099.3 652 78.4
Psat0s4808g0040 Pisum sativum HOM05D006576 ORTHO05D008644 0.0e+00 1099.3 671 76.6
Haze_17991 Corylus avellana HOM05D006576 ORTHO05D008644 0.0e+00 1098.2 807 68.2
Nitab4.5_0012039g0010 Nicotiana tabacum HOM05D006576 ORTHO05D008644 0.0e+00 1097.4 650 78.3
Lj4A42T76 Lonicera japonica HOM05D006576 ORTHO05D008644 0.0e+00 1095.9 661 77.9
PGR083G0445 Punica granatum HOM05D006576 ORTHO05D008644 0.0e+00 1095.1 651 78.8
THA.LOC104822840 Tarenaya hassleriana HOM05D006576 ORTHO05D008644 0.0e+00 1094.0 653 78.4
EL10Ac1g01831 Beta vulgaris HOM05D006576 ORTHO05D008644 0.0e+00 1090.9 646 77.7
Migut.C00705 Erythranthe guttata HOM05D006576 ORTHO05D008644 0.0e+00 1088.6 651 77.0
Solyc04g080140.4 Solanum lycopersicum HOM05D006576 ORTHO05D008644 0.0e+00 1088.6 651 77.3
FAN20G0603 Fragaria x ananassa HOM05D006576 ORTHO05D008644 0.0e+00 1084.7 649 78.4
Sopen04g033720 Solanum pennellii HOM05D006576 ORTHO05D008644 0.0e+00 1083.9 641 77.8
SalBow7G4023 Salvia bowleyana HOM05D006576 ORTHO05D008644 0.0e+00 1080.9 669 75.5
Eucgr.F01554 Eucalyptus grandis HOM05D006576 ORTHO05D008644 0.0e+00 1078.5 654 77.5
Nitab4.5_0000110g0470 Nicotiana tabacum HOM05D006576 ORTHO05D008644 0.0e+00 1075.8 653 77.0
Hund26593 Selenicereus undatus HOM05D006576 ORTHO05D008644 9.0e-312 1073.2 643 77.3
CAN.G1126.39 Capsicum annuum HOM05D006576 ORTHO05D008644 3.1e-311 1071.2 646 76.0
DCAR_019521 Daucus carota HOM05D006576 ORTHO05D008644 9.0e-311 1069.7 644 78.4
Lsat_1_v5_gn_1_17900 Lactuca sativa HOM05D006576 ORTHO05D008644 1.7e-309 1065.4 643 77.3
CSS0029857 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 1.9e-308 1062.0 599 83.3
Aqoxy6G01046 Aquilegia oxysepala HOM05D006576 ORTHO05D008644 2.1e-307 1058.5 651 75.6
Sp1g33910 Schrenkiella parvula HOM05D006576 ORTHO05D008644 2.1e-307 1058.5 652 75.8
Glyma.04G033200 Glycine max HOM05D006576 ORTHO05D008644 4.6e-307 1057.4 593 82.3
Actinidia15312 Actinidia chinensis HOM05D006576 ORTHO05D008644 7.8e-307 1056.6 615 79.8
AUR62033848 Chenopodium quinoa HOM05D006576 ORTHO05D008644 1.0e-306 1056.2 653 75.3
ECA247G3618 Erigeron canadensis HOM05D006576 ORTHO05D008644 3.9e-306 1054.3 615 80.0
A08p06220 Brassica napus HOM05D006576 ORTHO05D008644 1.9e-305 1052.0 652 74.7
Carub.0001s3555 Capsella rubella HOM05D006576 ORTHO05D008644 2.5e-305 1051.6 638 76.0
Ah.05g167470 Amaranthus hybridus HOM05D006576 ORTHO05D008644 3.3e-305 1051.2 653 75.2
BcaB04g17577 Brassica carinata HOM05D006576 ORTHO05D008644 7.3e-305 1050.0 651 74.3
AT1G45150 Arabidopsis thaliana HOM05D006576 ORTHO05D008644 1.2e-304 1049.3 652 75.0
Thhalv10011304m.g Eutrema salsugineum HOM05D006576 ORTHO05D008644 1.2e-304 1049.3 652 74.5
SGA_v2.0_scaffold24G10239 Striga asiatica HOM05D006576 ORTHO05D008644 2.1e-304 1048.5 649 75.5
BraA08t32625Z Brassica rapa HOM05D006576 ORTHO05D008644 6.2e-304 1047.0 652 74.2
BcaC07g37274 Brassica carinata HOM05D006576 ORTHO05D008644 2.0e-302 1042.0 652 74.4
C08p07030 Brassica napus HOM05D006576 ORTHO05D008644 2.0e-302 1042.0 652 74.4
BolC8t47545H Brassica oleracea HOM05D006576 ORTHO05D008644 2.0e-302 1042.0 652 74.4
vmacro21626 Vaccinium macrocarpon HOM05D006576 ORTHO05D008644 4.9e-301 1037.3 793 64.7
PSO675G1390 Papaver somniferum HOM05D006576 ORTHO05D008644 3.5e-299 1031.2 650 73.4
Duzib093G2111 Durio zibethinus HOM05D006576 ORTHO05D008644 4.3e-297 1024.2 650 75.7
ATR0733G192 Amborella trichopoda HOM05D006576 ORTHO05D008644 6.4e-293 1010.4 651 72.0
CANSAT25G2025 Cannabis sativa HOM05D006576 ORTHO05D008644 7.1e-292 1006.9 574 82.1
PSO541G0394 Papaver somniferum HOM05D006576 ORTHO05D008644 4.8e-288 994.2 650 71.7
Os07g0581300 Oryza sativa ssp. japonica HOM05D006576 ORTHO05D008644 4.2e-284 981.1 648 70.1
FAN15G1632 Fragaria x ananassa HOM05D006576 ORTHO05D008644 2.8e-280 968.4 643 73.6
AL1G52790 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 9.6e-273 943.3 560 77.0
Zm00001eb107720 Zea mays HOM05D006576 ORTHO05D008644 1.5e-265 919.5 593 72.7
Sc02g0006340 Simmondsia chinensis HOM05D006576 ORTHO05D008644 5.5e-260 901.0 559 75.8
CDE04G1970 Ceratophyllum demersum HOM05D006576 ORTHO05D008644 5.0e-253 877.9 576 70.7
Mapoly0015s0075 Marchantia polymorpha HOM05D006576 ORTHO05D008644 1.4e-250 869.8 641 63.7
Pp3c21_15170 Physcomitrium patens HOM05D006576 ORTHO05D008644 3.2e-244 848.6 641 62.6
SMO367G0262 Selaginella moellendorffii HOM05D006576 ORTHO05D008644 1.1e-239 833.6 643 60.7
Hma1.2p1_0203F.1_g086550 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 7.0e-215 751.1 514 70.6
CARHR036240 Cardamine hirsuta HOM05D006576 ORTHO05D008644 2.7e-198 696.0 364 84.1
Dinv36060 Davidia involucrata HOM05D006576 ORTHO05D008644 8.1e-179 631.3 371 80.9
Oeu005363.1 Olea europaea HOM05D006576 ORTHO05D008644 6.9e-162 575.1 372 73.4
unitig_578.g16727 Utricularia gibba HOM05D006576 ORTHO05D008644 4.9e-160 568.9 559 53.3
AUR62041679 Chenopodium quinoa HOM05D006576 ORTHO05D008644 3.3e-156 556.2 374 70.9
CBR_g55233 Chara braunii HOM05D006576 ORTHO05D008644 5.5e-143 512.3 543 49.2
AUR62041680 Chenopodium quinoa HOM05D006576 ORTHO05D008644 7.5e-124 448.7 242 81.8
CBR_g6514 Chara braunii HOM05D006576 ORTHO05D008644 2.6e-84 317.4 742 31.5
SEGI_38008 Sequoiadendron giganteum HOM05D006576 ORTHO05D008644 1.1e-77 295.4 151 86.1
SHI46795 Sapria himalayana HOM05D006576 ORTHO05D008644 3.2e-74 283.9 254 59.1
Lsat_1_v5_gn_3_960 Lactuca sativa HOM05D006576 ORTHO05D008644 2.7e-57 227.6 204 57.8
Nn7g38200 Nelumbo nucifera HOM05D006576 ORTHO05D008644 1.3e-27 129.0 72 84.7
Nn2g14734 Nelumbo nucifera HOM05D006576 ORTHO05D008644 2.2e-27 128.3 73 82.2
Atru.chr11.1906 Acer truncatum HOM05D006576 ORTHO05D008644 1.9e-26 125.2 77 72.7
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 3.6e-25 120.9 98 66.3
MBI18_g06878_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 4.4e-23 114.0 70 71.4
MBI18_g09633_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 5.7e-23 113.6 71 69.0
MBI13_g29621_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 6.9e-21 106.7 70 67.1
MD05G1053300 Malus domestica HOM05D006576 ORTHO05D248938 9.1e-21 106.3 64 75.0
CBR_g55378 Chara braunii HOM05D006576 ORTHO05D028753 2.5e-18 98.2 83 62.7
Zm00001eb326440 Zea mays HOM05D006576 ORTHO05D028753 2.5e-18 98.2 66 75.8
Zm00001eb361570 Zea mays HOM05D006576 ORTHO05D028753 2.5e-18 98.2 66 75.8
Zm00001eb377960 Zea mays HOM05D006576 ORTHO05D028753 2.5e-18 98.2 66 75.8
Zm00001eb171910 Zea mays HOM05D000538 ORTHO05D003297 4.8e-14 84.0 110 46.4
AL4G26800 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 1.7e-11 75.5 99 46.5
MBI18_g23781_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.7e-11 75.5 52 63.5
Zm00001eb147180 Zea mays HOM05D014217 ORTHO05D000496 8.2e-06 56.6 69 44.9


User provided reference genes

Program Settings