Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 1.8e-81 305.8 153 100.0
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 5.7e-75 284.3 153 90.2
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 4.8e-74 281.2 153 88.2
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 6.3e-74 280.8 153 88.9
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.1e-73 278.5 153 86.9
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 2.6e-72 275.4 153 85.6
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 5.9e-72 274.2 153 86.9
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.9e-71 271.9 148 88.5
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 5.0e-71 271.2 153 85.0
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 8.5e-71 270.4 153 83.7
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.1e-70 270.0 153 85.6
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 1.4e-70 269.6 153 82.4
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.9e-70 269.2 151 84.8
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 2.5e-70 268.9 151 83.4
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 3.2e-70 268.5 153 83.7
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 3.2e-70 268.5 151 86.1
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 7.2e-70 267.3 153 82.4
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 9.4e-70 266.9 151 82.8
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 1.6e-69 266.2 153 80.4
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 2.1e-69 265.8 151 82.8
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 2.1e-69 265.8 151 84.1
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 2.7e-69 265.4 150 83.3
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 3.6e-69 265.0 153 82.4
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 7.9e-69 263.8 153 80.4
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 7.9e-69 263.8 153 81.7
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 1.0e-68 263.5 153 80.4
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 1.0e-68 263.5 153 80.4
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 1.4e-68 263.1 153 81.0
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 1.8e-68 262.7 153 80.4
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 1.8e-68 262.7 152 80.9
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 2.3e-68 262.3 153 81.7
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 2.3e-68 262.3 153 81.0
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 3.0e-68 261.9 150 82.7
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 3.9e-68 261.5 150 84.0
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 3.9e-68 261.5 151 81.5
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 6.7e-68 260.8 153 82.4
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 8.8e-68 260.4 153 81.7
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 8.8e-68 260.4 151 80.8
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 8.8e-68 260.4 153 80.4
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 1.1e-67 260.0 153 79.1
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 1.1e-67 260.0 153 81.7
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 1.5e-67 259.6 153 79.7
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 1.5e-67 259.6 151 80.1
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 2.0e-67 259.2 145 84.8
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.0e-67 259.2 153 81.0
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 2.6e-67 258.8 153 79.7
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.6e-67 258.8 150 81.3
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 2.6e-67 258.8 150 80.7
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 2.6e-67 258.8 153 81.7
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 3.3e-67 258.5 153 82.4
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 3.3e-67 258.5 150 80.0
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 4.4e-67 258.1 153 79.7
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 4.4e-67 258.1 150 80.7
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 4.4e-67 258.1 153 78.4
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 5.7e-67 257.7 151 80.1
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 5.7e-67 257.7 151 80.8
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 7.4e-67 257.3 151 80.8
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 7.4e-67 257.3 151 80.1
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 9.7e-67 256.9 150 79.3
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 2.8e-66 255.4 153 80.4
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 2.8e-66 255.4 153 77.8
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 3.7e-66 255.0 153 77.1
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 3.7e-66 255.0 151 79.5
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 3.7e-66 255.0 152 80.3
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 4.8e-66 254.6 151 78.1
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 4.8e-66 254.6 153 77.8
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 4.8e-66 254.6 152 80.3
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.1e-65 253.4 155 78.1
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.4e-65 253.1 153 79.1
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 1.4e-65 253.1 153 77.1
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 2.4e-65 252.3 153 79.1
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 3.1e-65 251.9 151 78.1
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.1e-65 251.9 153 80.4
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 3.1e-65 251.9 155 77.4
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 4.1e-65 251.5 153 79.1
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 4.1e-65 251.5 145 80.7
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 7.0e-65 250.8 151 80.1
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 9.1e-65 250.4 153 77.1
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 9.1e-65 250.4 154 77.9
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 1.2e-64 250.0 153 77.8
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 1.2e-64 250.0 150 80.7
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 1.2e-64 250.0 153 76.5
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 1.2e-64 250.0 151 78.1
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 2.0e-64 249.2 152 77.0
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 2.6e-64 248.8 151 77.5
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 3.5e-64 248.4 153 77.1
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 1.3e-63 246.5 151 78.1
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 1.3e-63 246.5 153 75.2
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 1.7e-63 246.1 151 76.8
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 1.7e-63 246.1 151 77.5
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 2.2e-63 245.7 151 78.8
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 3.8e-63 245.0 153 77.1
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 8.5e-63 243.8 149 77.9
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 3.2e-62 241.9 150 78.7
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 3.2e-62 241.9 153 71.9
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 7.2e-62 240.7 153 72.5
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 7.2e-62 240.7 148 77.0
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 7.2e-62 240.7 150 76.0
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 1.6e-61 239.6 151 72.2
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 1.0e-60 236.9 153 70.6
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 1.4e-60 236.5 153 71.2
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 1.4e-60 236.5 148 79.7
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 1.4e-60 236.5 151 74.8
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 4.0e-60 235.0 153 70.6
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 8.8e-60 233.8 153 71.2
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 1.5e-59 233.0 150 71.3
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 2.0e-59 232.6 150 71.3
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 2.6e-59 232.3 150 70.0
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 3.3e-59 231.9 151 73.5
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 5.7e-59 231.1 150 70.7
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 7.5e-59 230.7 150 70.0
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 7.5e-59 230.7 153 68.0
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 1.3e-58 229.9 152 68.4
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 2.8e-58 228.8 151 68.2
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 2.8e-58 228.8 153 69.3
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 3.7e-58 228.4 150 68.7
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 8.2e-58 227.3 150 76.0
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 7.7e-56 220.7 155 68.4
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 7.7e-56 220.7 155 67.7
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 1.0e-55 220.3 168 62.5
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 5.0e-55 218.0 153 66.0
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 1.5e-54 216.5 151 66.2
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.1e-53 212.6 143 72.7
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 3.6e-53 211.8 145 63.4
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 3.4e-51 205.3 153 63.4
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 7.5e-51 204.1 153 59.5
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 2.2e-50 202.6 122 77.0
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 2.2e-50 202.6 119 79.8
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 8.3e-50 200.7 120 79.2
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 7.0e-49 197.6 153 65.4
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 2.7e-45 185.7 128 65.6
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 1.0e-44 183.7 111 75.7
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 3.0e-44 182.2 111 74.8
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 3.4e-43 178.7 153 51.6
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 1.4e-41 173.3 179 55.9
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 2.0e-35 152.9 94 78.7
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 5.7e-35 151.4 149 48.3
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 2.7e-32 142.5 78 87.2
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 2.7e-32 142.5 75 86.7
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 3.5e-32 142.1 122 60.7
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.5e-30 136.7 100 69.0
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 3.3e-30 135.6 144 46.5
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 4.0e-28 128.6 75 76.0
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 5.8e-27 124.8 75 80.0
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 2.9e-26 122.5 75 77.3
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 4.9e-26 121.7 67 83.6
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 1.1e-25 120.6 75 78.7
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 7.0e-25 117.9 65 81.5
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 2.7e-24 115.9 89 67.4
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 6.0e-24 114.8 75 74.7
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 2.3e-20 102.8 149 36.2
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 3.1e-12 75.9 48 79.2
TAR383G0869 Trochodendron aralioides HOM05D005040 ORTHO05D005984 3.9e-07 58.9 49 57.1


User provided reference genes

Program Settings