Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 1.0e-235 820.5 726 100.0
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 1.0e-113 415.2 756 47.5
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 5.0e-105 386.3 726 52.9
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 3.3e-96 357.1 827 49.3
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 1.1e-91 342.0 716 40.4
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 7.1e-91 339.3 733 58.7
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 3.8e-84 317.0 714 44.4
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 3.3e-80 303.9 725 45.7
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 2.4e-78 297.7 771 46.8
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 1.5e-77 295.0 689 38.5
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 9.9e-77 292.4 763 49.5
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 1.2e-74 285.4 703 49.2
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 6.0e-74 283.1 536 55.2
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 1.7e-73 281.6 723 49.5
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 1.1e-72 278.9 697 53.4
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.9e-72 278.1 540 45.6
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 5.6e-72 276.6 539 45.1
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.4e-70 271.9 540 45.6
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 3.1e-70 270.8 633 43.6
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 4.0e-70 270.4 706 42.4
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 3.8e-68 263.8 535 46.4
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 6.4e-68 263.1 728 59.9
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.4e-67 261.9 731 59.8
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 7.1e-67 259.6 708 44.6
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 1.0e-65 255.8 730 49.5
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 1.3e-65 255.4 548 50.2
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 1.9e-64 251.5 726 56.5
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 4.3e-64 250.4 732 48.1
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 6.2e-63 246.5 689 41.1
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 8.1e-63 246.1 678 35.8
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 6.9e-62 243.0 729 52.8
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 4.5e-61 240.4 720 40.1
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 3.2e-59 234.2 538 42.9
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 7.1e-59 233.0 756 51.2
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 2.7e-58 231.1 511 44.2
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 7.4e-56 223.0 570 52.6
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 7.4e-56 223.0 565 34.9
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 4.0e-54 217.2 729 57.9
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 1.5e-53 215.3 538 61.5
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 2.0e-53 214.9 565 34.5
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 2.0e-53 214.9 569 33.4
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 4.5e-53 213.8 735 44.8
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 1.7e-52 211.8 732 46.7
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 2.9e-52 211.1 695 52.5
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 4.9e-52 210.3 738 44.4
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 8.4e-52 209.5 715 43.6
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 8.4e-52 209.5 676 43.8
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.1e-51 209.1 708 38.7
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 1.4e-51 208.8 716 45.0
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 1.4e-51 208.8 530 45.8
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 3.2e-51 207.6 565 49.0
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 9.3e-51 206.1 732 47.1
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 1.2e-50 205.7 710 49.9
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 6.0e-50 203.4 726 42.7
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 1.1e-48 199.1 737 43.8
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 1.1e-48 199.1 659 34.7
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 1.5e-48 198.7 620 46.9
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 1.5e-48 198.7 730 43.8
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 2.5e-48 198.0 729 41.7
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 4.3e-48 197.2 725 39.9
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 7.4e-48 196.4 659 40.8
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 9.7e-48 196.1 710 37.0
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 1.6e-47 195.3 734 43.2
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 4.1e-46 190.7 713 45.3
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 6.9e-46 189.9 729 56.7
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 1.5e-45 188.7 727 42.1
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 1.5e-45 188.7 641 47.7
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 2.0e-45 188.3 669 39.0
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 2.2e-44 184.9 677 37.7
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 2.9e-44 184.5 735 53.5
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 2.5e-43 181.4 711 39.1
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 2.7e-42 177.9 730 51.5
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 7.9e-42 176.4 656 47.4
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 5.1e-41 173.7 496 37.1
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 6.7e-41 173.3 684 48.0
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 1.1e-40 172.6 710 52.1
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 1.9e-40 171.8 417 47.0
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 5.7e-40 170.2 717 29.8
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 9.7e-40 169.5 718 38.7
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 1.7e-39 168.7 726 46.0
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 2.8e-39 167.9 720 53.3
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 3.7e-39 167.5 531 38.8
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 8.2e-39 166.4 527 37.6
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 1.4e-38 165.6 709 48.7
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 1.4e-38 165.6 709 48.7
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 1.4e-38 165.6 751 41.4
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 1.2e-37 162.5 731 45.1
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 3.4e-37 161.0 726 39.8
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 5.9e-37 160.2 631 47.5
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 7.7e-37 159.8 583 38.3
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 1.7e-36 158.7 631 47.5
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 1.7e-36 158.7 631 47.5
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 6.5e-36 156.8 474 38.4
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 1.4e-35 155.6 151 56.3
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 7.2e-35 153.3 697 50.1
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 3.9e-33 147.5 198 51.0
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 6.7e-33 146.7 423 36.9
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 1.1e-30 139.4 607 37.4
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.1e-30 139.4 206 46.6
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 5.9e-29 133.7 525 52.4
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 7.7e-29 133.3 725 46.3
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 1.0e-28 132.9 676 37.1
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 1.0e-28 132.9 323 46.1
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 1.0e-28 132.9 632 46.5
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 2.9e-28 131.3 744 40.6
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 5.5e-27 127.1 494 43.1
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 3.0e-25 121.3 474 37.1
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 5.2e-25 120.6 438 43.6
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 8.8e-25 119.8 494 41.7
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 1.1e-24 119.4 725 41.5
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 1.1e-24 119.4 484 43.0
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 2.6e-24 118.2 708 27.5
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 3.3e-24 117.9 435 38.9
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 3.3e-24 117.9 738 39.8
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 9.7e-24 116.3 335 33.7
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 1.7e-23 115.5 688 31.0
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 3.1e-22 111.3 161 43.5
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 5.3e-22 110.5 203 39.9
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 7.0e-22 110.2 173 37.6
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 9.1e-22 109.8 735 37.6
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 2.6e-21 108.2 469 42.0
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 1.0e-20 106.3 752 30.6
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 2.2e-20 105.1 435 33.8
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 5.0e-20 104.0 682 45.7
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 1.9e-19 102.1 86 64.0
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 2.5e-19 101.7 483 31.3
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 1.2e-18 99.4 434 25.6
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 2.1e-18 98.6 450 44.9
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 1.8e-17 95.5 391 33.2
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 4.1e-14 84.3 419 22.4
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 4.5e-13 80.9 632 24.2
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 4.5e-13 80.9 487 33.5
Potri.013G109600 Populus trichocarpa HOM05D004901 ORTHO05D005592 7.7e-13 80.1 95 50.5
Cpa.g.sc1188.1 Carica papaya HOM05D004642 ORTHO05D005466 8.5e-12 76.6 306 52.6
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 7.2e-11 73.6 214 34.1
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 7.2e-11 73.6 334 37.1
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 2.7e-10 71.6 537 23.5
SEGI_16798 Sequoiadendron giganteum HOM05D004642 ORTHO05D005466 5.2e-09 67.4 449 31.8
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 3.4e-08 64.7 408 22.3
A03p54580 Brassica napus HOM05D004642 ORTHO05D005466 9.8e-08 63.2 331 41.1
BraA01t03868Z Brassica rapa HOM05D004642 ORTHO05D005466 9.8e-08 63.2 271 33.2
BraA03t14525Z Brassica rapa HOM05D004642 ORTHO05D005466 9.8e-08 63.2 331 41.1
TAR624G1258 Trochodendron aralioides HOM05D004642 ORTHO05D005466 9.8e-08 63.2 69 53.6
Zm00001eb122200 Zea mays HOM05D004642 ORTHO05D005466 1.3e-07 62.8 377 40.8
A01p38100 Brassica napus HOM05D015723 ORTHO05D003275 2.8e-07 61.6 374 28.1
HPP92_019980 Vanilla planifolia HOM05D004642 ORTHO05D005466 3.1e-06 58.2 357 37.3


User provided reference genes

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