Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G047100 Manihot esculenta HOM05D003500 ORTHO05D003919 1.0e-119 433.7 275 100.0
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 2.7e-59 233.0 253 59.7
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 2.4e-47 193.4 278 47.8
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 3.0e-42 176.4 280 44.3
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 5.7e-41 172.2 283 43.5
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 2.2e-37 160.2 280 42.9
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 2.9e-37 159.8 156 57.7
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 2.9e-37 159.8 194 49.5
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 2.5e-36 156.8 273 42.5
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 1.6e-35 154.1 136 63.2
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 2.7e-35 153.3 271 41.7
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 7.9e-35 151.8 137 62.0
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 8.7e-34 148.3 273 40.3
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 1.5e-33 147.5 279 40.1
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 1.9e-33 147.1 176 54.5
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 9.7e-33 144.8 211 47.9
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 1.6e-32 144.1 274 38.3
Gohir.D03G063800 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.6e-32 144.1 210 48.1
Gorai.002G059400 Gossypium raimondii HOM05D003500 ORTHO05D003919 4.1e-31 139.4 211 46.9
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 5.3e-31 139.0 271 39.9
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 2.0e-30 137.1 282 37.9
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 5.9e-30 135.6 270 39.3
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 1.9e-28 130.6 307 37.5
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 1.9e-28 130.6 295 35.3
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 2.5e-28 130.2 150 55.3
Sabra03G0031200 Salix brachista HOM05D003500 ORTHO05D003919 2.5e-28 130.2 118 61.0
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 3.2e-28 129.8 291 36.1
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 4.2e-28 129.4 302 36.4
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 4.2e-28 129.4 270 35.6
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 5.5e-28 129.0 287 38.0
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 1.6e-27 127.5 317 34.7
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 2.7e-27 126.7 270 37.0
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 2.3e-26 123.6 176 48.3
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 2.3e-26 123.6 278 37.4
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 6.7e-26 122.1 194 44.8
Psat7g252240 Pisum sativum HOM05D003500 ORTHO05D003919 1.1e-25 121.3 303 36.6
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 3.3e-25 119.8 303 32.3
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 5.7e-25 119.0 168 47.0
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 1.3e-24 117.9 299 34.8
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 1.7e-24 117.5 283 36.7
Lj3g0021763 Lotus japonicus HOM05D003500 ORTHO05D003919 1.7e-24 117.5 288 34.4
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 1.7e-24 117.5 291 34.4
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 2.2e-24 117.1 283 36.4
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 2.8e-24 116.7 273 37.7
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 3.7e-24 116.3 274 37.2
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 1.1e-23 114.8 276 36.6
SHI10927 Sapria himalayana HOM05D003500 ORTHO05D003919 1.1e-23 114.8 170 45.3
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 1.4e-23 114.4 283 36.0
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 1.8e-23 114.0 276 38.8
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 4.1e-23 112.8 283 36.0
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 4.1e-23 112.8 307 35.5
Nitab4.5_0000671g0100 Nicotiana tabacum HOM05D003500 ORTHO05D003919 9.1e-23 111.7 134 52.2
Peaxi162Scf00015g10038 Petunia axillaris HOM05D003500 ORTHO05D003919 1.2e-22 111.3 142 50.0
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 2.6e-22 110.2 270 33.0
BcaB02g11002 Brassica carinata HOM05D003500 ORTHO05D003919 3.4e-22 109.8 275 36.0
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 4.5e-22 109.4 268 34.7
Nitab4.5_0005851g0060 Nicotiana tabacum HOM05D003500 ORTHO05D003919 7.7e-22 108.6 134 50.7
AT1G52343 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 1.0e-21 108.2 284 37.0
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 2.9e-21 106.7 275 35.3
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 2.9e-21 106.7 295 33.6
AL1G60570 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 1.1e-20 104.8 264 36.7
arahy.Tifrunner.gnm1.ann1.Y86J0E Arachis hypogaea HOM05D003500 ORTHO05D003919 2.5e-20 103.6 143 50.3
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 2.5e-20 103.6 275 32.4
Solyc03g120180.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 3.2e-20 103.2 130 50.8
arahy.Tifrunner.gnm1.ann1.AD7SDK Arachis hypogaea HOM05D003500 ORTHO05D003919 5.5e-20 102.4 143 49.7
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 5.5e-20 102.4 293 31.1
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 5.5e-20 102.4 289 32.2
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 9.4e-20 101.7 272 33.8
SGA_v2.0_scaffold37G14827 Striga asiatica HOM05D003500 ORTHO05D003919 1.2e-19 101.3 145 47.6
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 2.7e-19 100.1 294 31.0
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 3.6e-19 99.8 280 31.1
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 4.7e-19 99.4 297 31.0
MELO3C012963.2 Cucumis melo HOM05D003500 ORTHO05D003919 6.1e-19 99.0 278 35.3
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 6.1e-19 99.0 274 33.2
Actinidia32755 Actinidia chinensis HOM05D003500 ORTHO05D003919 7.9e-19 98.6 270 33.3
CSS0016282 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 1.4e-18 97.8 119 52.9
CSS0048346 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 1.4e-18 97.8 119 52.9
Lalb_Chr01g0012691 Lupinus albus HOM05D003500 ORTHO05D003919 1.4e-18 97.8 163 41.7
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 2.3e-18 97.1 294 32.0
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 2.3e-18 97.1 300 29.7
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 3.0e-18 96.7 292 33.2
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 6.7e-18 95.5 291 32.6
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 1.5e-17 94.4 300 30.7
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 2.0e-17 94.0 296 34.8
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 2.0e-17 94.0 302 29.8
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 2.6e-17 93.6 294 31.6
Phvul.010G150500 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 2.6e-17 93.6 140 45.7
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 4.4e-17 92.8 136 44.9
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 5.7e-17 92.4 294 32.0
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 4.8e-16 89.4 276 33.0
SalBow2G0526 Salvia bowleyana HOM05D003500 ORTHO05D003919 8.2e-16 88.6 279 30.5
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 2.4e-15 87.0 348 28.2
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 5.3e-15 85.9 297 42.8
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.2e-14 84.7 290 30.7
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 1.2e-14 84.7 301 28.9
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 1.2e-14 84.7 281 32.4
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 2.6e-14 83.6 290 29.3
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 4.5e-14 82.8 273 28.2
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 5.9e-14 82.4 300 27.7
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 5.9e-14 82.4 348 27.9
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 5.9e-14 82.4 276 27.5
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 7.7e-14 82.0 292 30.5
unitig_899.g14777 Utricularia gibba HOM05D003500 ORTHO05D003919 7.7e-14 82.0 273 32.2
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 1.0e-13 81.6 286 27.3
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 1.7e-13 80.9 291 32.3
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 2.9e-13 80.1 276 27.5
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 5.0e-13 79.3 267 29.2
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 6.5e-13 79.0 300 30.0
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 8.5e-13 78.6 275 28.0
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 2.5e-12 77.0 285 26.0
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 2.5e-12 77.0 283 30.7
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 4.2e-12 76.3 298 29.2
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 9.4e-12 75.1 161 38.5
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 1.6e-11 74.3 162 35.2
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 1.6e-11 74.3 301 29.2
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 1.6e-11 74.3 293 29.4
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 1.6e-11 74.3 283 27.2
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 2.1e-11 73.9 293 29.7
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 2.1e-11 73.9 173 33.5
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 2.1e-11 73.9 310 27.1
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 4.7e-11 72.8 295 29.8
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 6.1e-11 72.4 283 30.7
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 1.0e-10 71.6 284 25.0
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.0e-10 71.6 288 27.8
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 1.0e-10 71.6 275 26.2
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 1.4e-10 71.2 291 26.5
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 1.4e-10 71.2 297 26.6
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 1.8e-10 70.9 290 26.2
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.8e-10 70.9 290 26.2
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 2.3e-10 70.5 286 28.0
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 2.3e-10 70.5 273 26.0
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 3.0e-10 70.1 264 29.5
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 4.0e-10 69.7 296 25.7
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 6.7e-10 68.9 295 28.1
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 8.8e-10 68.6 268 27.6
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 2.6e-09 67.0 142 38.7
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 3.3e-09 66.6 287 26.1
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 7.5e-09 65.5 276 26.8
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 1.3e-08 64.7 285 26.3
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 1.3e-08 64.7 290 30.7
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 2.8e-08 63.5 284 26.4
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 2.8e-08 63.5 297 27.9
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 3.7e-08 63.2 277 26.4
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 8.2e-08 62.0 281 26.7
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 8.2e-08 62.0 283 25.4
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 1.1e-07 61.6 144 34.0
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 1.4e-07 61.2 275 24.7
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 1.4e-07 61.2 275 24.7
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 1.4e-07 61.2 275 24.7
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 1.8e-07 60.8 282 24.8
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 2.4e-07 60.5 291 25.8
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 5.3e-07 59.3 280 24.3
ATR0051G010 Amborella trichopoda HOM05D003500 ORTHO05D003919 7.0e-07 58.9 177 33.3
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 7.0e-07 58.9 306 25.5
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 7.0e-07 58.9 286 25.5
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 1.2e-06 58.2 308 27.3
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 1.6e-06 57.8 277 23.8
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 2.0e-06 57.4 285 24.9
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 5.9e-06 55.8 133 32.3
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 7.7e-06 55.5 275 24.4


User provided reference genes

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