Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G038100 Manihot esculenta HOM05D003870 ORTHO05D004567 2.9e-76 288.5 145 100.0
Manes.04G129900 Manihot esculenta HOM05D003870 ORTHO05D004567 1.6e-74 282.7 145 98.6
Potri.003G052500 Populus trichocarpa HOM05D003870 ORTHO05D004567 3.0e-73 278.5 145 94.5
Dinv38024 Davidia involucrata HOM05D003870 ORTHO05D004567 2.5e-72 275.4 145 94.5
Sabra03G0026800 Salix brachista HOM05D003870 ORTHO05D004567 1.4e-70 269.6 145 91.7
CANSAT56G1465 Cannabis sativa HOM05D003870 ORTHO05D004567 6.8e-70 267.3 145 91.7
PGR102G1204 Punica granatum HOM05D003870 ORTHO05D004567 6.8e-70 267.3 145 91.7
VMungo0331G0764 Vigna mungo HOM05D003870 ORTHO05D004567 1.5e-69 266.2 145 91.7
Cfa002093 Carpinus fangiana HOM05D003870 ORTHO05D004567 3.4e-69 265.0 145 91.7
Haze_16364 Corylus avellana HOM05D003870 ORTHO05D004567 3.4e-69 265.0 145 91.7
Ciclev10026722m.g Citrus clementina HOM05D003870 ORTHO05D004567 5.8e-69 264.2 145 90.3
Prupe.3G067400 Prunus persica HOM05D003870 ORTHO05D004567 5.8e-69 264.2 145 90.3
Eucgr.F03038 Eucalyptus grandis HOM05D003870 ORTHO05D004567 9.8e-69 263.5 144 89.6
CiPaw.01G235900 Carya illinoinensis HOM05D003870 ORTHO05D004567 1.3e-68 263.1 145 90.3
RcHm_v2.0_Chr2g0138931 Rosa chinensis HOM05D003870 ORTHO05D004567 1.3e-68 263.1 145 89.0
Glyma.07G019700 Glycine max HOM05D003870 ORTHO05D004567 1.7e-68 262.7 145 90.3
FAN05G2130 Fragaria x ananassa HOM05D003870 ORTHO05D004567 2.9e-68 261.9 145 88.3
FAN14G2389 Fragaria x ananassa HOM05D003870 ORTHO05D004567 3.7e-68 261.5 145 88.3
Aqoxy7G01609 Aquilegia oxysepala HOM05D003870 ORTHO05D004567 6.4e-68 260.8 145 89.0
Cpa.g.sc1182.1 Carica papaya HOM05D003870 ORTHO05D004567 6.4e-68 260.8 145 87.6
FAN02G0928 Fragaria x ananassa HOM05D003870 ORTHO05D004567 6.4e-68 260.8 145 88.3
Phvul.010G148800 Phaseolus vulgaris HOM05D003870 ORTHO05D004567 6.4e-68 260.8 145 90.3
QL05p021780 Quercus lobata HOM05D003870 ORTHO05D004567 1.1e-67 260.0 144 88.9
MD09G1209500 Malus domestica HOM05D003870 ORTHO05D004567 1.4e-67 259.6 145 88.3
Hma1.2p1_1195F.1_g265780 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 1.9e-67 259.2 146 89.7
Hma1.2p1_3147F.1_g333153 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 1.9e-67 259.2 146 89.7
Nn3g18073 Nelumbo nucifera HOM05D003870 ORTHO05D004567 1.9e-67 259.2 146 91.1
Glyma.08G204800 Glycine max HOM05D003870 ORTHO05D004567 2.4e-67 258.8 145 89.0
Nn2g11696 Nelumbo nucifera HOM05D003870 ORTHO05D004567 2.4e-67 258.8 145 89.7
FvH4_6g31740 Fragaria vesca HOM05D003870 ORTHO05D004567 3.2e-67 258.5 145 87.6
FAN09G1730 Fragaria x ananassa HOM05D003870 ORTHO05D004567 3.2e-67 258.5 145 87.6
ClCG07G013150 Citrullus lanatus HOM05D003870 ORTHO05D004567 5.4e-67 257.7 145 86.9
DCAR_023061 Daucus carota HOM05D003870 ORTHO05D004567 5.4e-67 257.7 145 86.2
MELO3C012971.2 Cucumis melo HOM05D003870 ORTHO05D004567 7.0e-67 257.3 145 87.6
TAR626G1423 Trochodendron aralioides HOM05D003870 ORTHO05D004567 1.6e-66 256.1 145 89.7
CSS0035581 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 2.0e-66 255.8 145 86.9
Migut.D01017 Erythranthe guttata HOM05D003870 ORTHO05D004567 2.0e-66 255.8 145 86.2
CsaV3_3G025000 Cucumis sativus L. HOM05D003870 ORTHO05D004567 3.5e-66 255.0 145 86.2
arahy.Tifrunner.gnm1.ann1.71HCYD Arachis hypogaea HOM05D003870 ORTHO05D004567 4.6e-66 254.6 145 88.3
arahy.Tifrunner.gnm1.ann1.YBSA05 Arachis hypogaea HOM05D003870 ORTHO05D004567 4.6e-66 254.6 145 88.3
Nitab4.5_0001315g0130 Nicotiana tabacum HOM05D003870 ORTHO05D004567 6.0e-66 254.2 146 87.7
TAR636G2531 Trochodendron aralioides HOM05D003870 ORTHO05D004567 7.8e-66 253.8 145 88.3
TAR383G0495 Trochodendron aralioides HOM05D003870 ORTHO05D004567 1.3e-65 253.1 145 88.3
Psat5g298080 Pisum sativum HOM05D003870 ORTHO05D004567 1.7e-65 252.7 147 87.1
CSS0004601 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 2.3e-65 252.3 145 86.2
CSS0022866 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 2.3e-65 252.3 145 86.2
Gohir.A05G131700 Gossypium hirsutum HOM05D003870 ORTHO05D004567 2.3e-65 252.3 145 86.9
Sed0024359 Sechium edule HOM05D003870 ORTHO05D004567 3.0e-65 251.9 145 85.5
Thecc.06G092200 Theobroma cacao HOM05D003870 ORTHO05D004567 3.0e-65 251.9 145 86.2
COL.COLO4_30434 Corchorus olitorius HOM05D003870 ORTHO05D004567 3.9e-65 251.5 145 86.2
Duzib235G0817 Durio zibethinus HOM05D003870 ORTHO05D004567 3.9e-65 251.5 145 86.2
Glyma.15G016300 Glycine max HOM05D003870 ORTHO05D004567 3.9e-65 251.5 145 88.3
Gohir.D05G131200 Gossypium hirsutum HOM05D003870 ORTHO05D004567 3.9e-65 251.5 145 86.2
Gorai.009G134900 Gossypium raimondii HOM05D003870 ORTHO05D004567 3.9e-65 251.5 145 86.2
Lsat_1_v5_gn_5_130901 Lactuca sativa HOM05D003870 ORTHO05D004567 5.0e-65 251.1 145 86.9
Nitab4.5_0003418g0030 Nicotiana tabacum HOM05D003870 ORTHO05D004567 5.0e-65 251.1 146 87.0
PSO782G2129 Papaver somniferum HOM05D003870 ORTHO05D004567 5.0e-65 251.1 146 87.0
PSO832G3918 Papaver somniferum HOM05D003870 ORTHO05D004567 5.0e-65 251.1 146 87.0
Lalb_Chr14g0373231 Lupinus albus HOM05D003870 ORTHO05D004567 6.6e-65 250.8 145 87.6
Nitab4.5_0000351g0060 Nicotiana tabacum HOM05D003870 ORTHO05D004567 6.6e-65 250.8 146 86.3
Sed0005638 Sechium edule HOM05D003870 ORTHO05D004567 8.6e-65 250.4 145 84.1
SGA_v2.0_scaffold5G02558 Striga asiatica HOM05D003870 ORTHO05D004567 1.5e-64 249.6 145 84.1
CAN.G1152.5 Capsicum annuum HOM05D003870 ORTHO05D004567 1.9e-64 249.2 146 86.3
CiPaw.02G148900 Carya illinoinensis HOM05D003870 ORTHO05D004567 1.9e-64 249.2 145 86.2
Medtr2g101820 Medicago truncatula HOM05D003870 ORTHO05D004567 1.9e-64 249.2 148 87.2
Nitab4.5_0018837g0020 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.9e-64 249.2 146 86.3
Migut.I00942 Erythranthe guttata HOM05D003870 ORTHO05D004567 2.5e-64 248.8 145 84.1
Nitab4.5_0002859g0140 Nicotiana tabacum HOM05D003870 ORTHO05D004567 2.5e-64 248.8 146 86.3
Lj3g0012525 Lotus japonicus HOM05D003870 ORTHO05D004567 3.3e-64 248.4 149 85.2
Ah.01g021620 Amaranthus hybridus HOM05D003870 ORTHO05D004567 4.3e-64 248.1 145 82.1
MBI01_g07179_MAGBIO Magnolia biondii HOM05D003870 ORTHO05D004567 5.6e-64 247.7 145 84.8
Peaxi162Scf00015g00032 Petunia axillaris HOM05D003870 ORTHO05D004567 5.6e-64 247.7 146 86.3
BcaC01g01311 Brassica carinata HOM05D003870 ORTHO05D004567 7.3e-64 247.3 146 84.2
BcaC01g01313 Brassica carinata HOM05D003870 ORTHO05D004567 7.3e-64 247.3 146 84.2
BraA08t32272Z Brassica rapa HOM05D003870 ORTHO05D004567 7.3e-64 247.3 146 83.6
VMungo1080G1700 Vigna mungo HOM05D003870 ORTHO05D004567 7.3e-64 247.3 138 89.9
Duzib160G0587 Durio zibethinus HOM05D003870 ORTHO05D004567 9.5e-64 246.9 145 84.8
A08p02270 Brassica napus HOM05D003870 ORTHO05D004567 1.2e-63 246.5 146 83.6
Eucgr.J02958 Eucalyptus grandis HOM05D003870 ORTHO05D004567 1.2e-63 246.5 146 85.6
GSVIVG01017071001 Vitis vinifera HOM05D003870 ORTHO05D004567 1.2e-63 246.5 145 84.1
Actinidia21679 Actinidia chinensis HOM05D003870 ORTHO05D004567 1.6e-63 246.1 145 84.1
MSTRG.11054 Avicennia marina HOM05D003870 ORTHO05D004567 1.6e-63 246.1 145 82.8
Cc04_g03050 Coffea canephora HOM05D003870 ORTHO05D004567 2.1e-63 245.7 145 84.8
Sp1g38770 Schrenkiella parvula HOM05D003870 ORTHO05D004567 2.1e-63 245.7 146 82.9
BcaB04g18888 Brassica carinata HOM05D003870 ORTHO05D004567 2.8e-63 245.4 146 83.6
PGSC0003DMG400002626 Solanum tuberosum HOM05D003870 ORTHO05D004567 2.8e-63 245.4 146 84.9
TWI12G1021 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 2.8e-63 245.4 145 83.4
A06p01960 Brassica napus HOM05D003870 ORTHO05D004567 3.6e-63 245.0 146 82.9
C03p90500 Brassica napus HOM05D003870 ORTHO05D004567 3.6e-63 245.0 146 83.6
BolC3t21374H Brassica oleracea HOM05D003870 ORTHO05D004567 3.6e-63 245.0 146 83.6
BraA06t23412Z Brassica rapa HOM05D003870 ORTHO05D004567 3.6e-63 245.0 146 82.9
CAN.G438.27 Capsicum annuum HOM05D003870 ORTHO05D004567 3.6e-63 245.0 146 85.6
C06p07460 Brassica napus HOM05D003870 ORTHO05D004567 8.1e-63 243.8 146 82.2
BolC6t35835H Brassica oleracea HOM05D003870 ORTHO05D004567 8.1e-63 243.8 146 82.2
AUR62011659 Chenopodium quinoa HOM05D003870 ORTHO05D004567 8.1e-63 243.8 145 82.1
ECA234G4669 Erigeron canadensis HOM05D003870 ORTHO05D004567 1.1e-62 243.4 145 83.4
Sp3g14500 Schrenkiella parvula HOM05D003870 ORTHO05D004567 1.1e-62 243.4 146 82.9
AT1G52230 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 1.8e-62 242.7 146 82.2
Aa31LG10G2680 Aethionema arabicum HOM05D003870 ORTHO05D004567 2.3e-62 242.3 146 82.2
Solyc03g120640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 2.3e-62 242.3 146 84.2
Carub.0001s4120 Capsella rubella HOM05D003870 ORTHO05D004567 3.1e-62 241.9 146 81.5
Oeu029644.1 Olea europaea HOM05D003870 ORTHO05D004567 3.1e-62 241.9 145 82.1
PGSC0003DMG400016504 Solanum tuberosum HOM05D003870 ORTHO05D004567 3.1e-62 241.9 146 83.6
CARHR091300 Cardamine hirsuta HOM05D003870 ORTHO05D004567 4.0e-62 241.5 146 80.8
Lalb_Chr25g0279971 Lupinus albus HOM05D003870 ORTHO05D004567 4.0e-62 241.5 146 84.2
Glyma.13G357300 Glycine max HOM05D003870 ORTHO05D004567 6.8e-62 240.7 137 89.8
Solyc06g066640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 8.9e-62 240.4 146 82.9
PGSC0003DMG400007571 Solanum tuberosum HOM05D003870 ORTHO05D004567 8.9e-62 240.4 146 84.9
Thhalv10021715m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 1.2e-61 240.0 146 82.2
Solyc12g044280.2 Solanum lycopersicum HOM05D003870 ORTHO05D004567 1.2e-61 240.0 145 84.1
Sopen06g024910 Solanum pennellii HOM05D003870 ORTHO05D004567 1.2e-61 240.0 146 82.9
Sopen12g022520 Solanum pennellii HOM05D003870 ORTHO05D004567 1.2e-61 240.0 145 84.1
vmacro16969 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 1.2e-61 240.0 145 83.4
AT3G16140 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 1.5e-61 239.6 146 80.1
BcaC05g28907 Brassica carinata HOM05D003870 ORTHO05D004567 1.5e-61 239.6 146 81.5
C05p50360 Brassica napus HOM05D003870 ORTHO05D004567 1.5e-61 239.6 146 81.5
BolC5t33784H Brassica oleracea HOM05D003870 ORTHO05D004567 1.5e-61 239.6 146 81.5
BcaB06g25707 Brassica carinata HOM05D003870 ORTHO05D004567 2.0e-61 239.2 146 81.5
Peaxi162Scf00034g00513 Petunia axillaris HOM05D003870 ORTHO05D004567 2.0e-61 239.2 143 84.6
vmacro18888 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 2.0e-61 239.2 146 82.9
Thhalv10011814m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 2.6e-61 238.8 146 80.8
HanXRQChr12g0360771 Helianthus annuus HOM05D003870 ORTHO05D004567 2.6e-61 238.8 145 82.1
AL3G28820 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 3.4e-61 238.4 146 80.1
CARHR042360 Cardamine hirsuta HOM05D003870 ORTHO05D004567 3.4e-61 238.4 146 80.8
Rhsim08G0223300 Rhododendron simsii HOM05D003870 ORTHO05D004567 3.4e-61 238.4 146 82.2
TWI75G1362 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 3.4e-61 238.4 146 82.9
BraA01t03856Z Brassica rapa HOM05D003870 ORTHO05D004567 4.4e-61 238.0 146 81.5
Carub.0003s1588 Capsella rubella HOM05D003870 ORTHO05D004567 9.9e-61 236.9 146 80.8
Lsat_1_v5_gn_1_35241 Lactuca sativa HOM05D003870 ORTHO05D004567 9.9e-61 236.9 145 84.1
THA.LOC104810527 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 9.9e-61 236.9 147 83.7
THA.LOC104817982 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 9.9e-61 236.9 146 82.9
A05p33360 Brassica napus HOM05D003870 ORTHO05D004567 1.3e-60 236.5 146 80.8
BraA05t22161Z Brassica rapa HOM05D003870 ORTHO05D004567 1.3e-60 236.5 146 80.8
BcaB04g17164 Brassica carinata HOM05D003870 ORTHO05D004567 2.2e-60 235.7 144 81.9
A01p37960 Brassica napus HOM05D003870 ORTHO05D004567 2.9e-60 235.3 146 80.8
SGA_v2.0_scaffold69G23361 Striga asiatica HOM05D003870 ORTHO05D004567 2.9e-60 235.3 146 80.1
EL10Ac9g22029 Beta vulgaris HOM05D003870 ORTHO05D004567 4.9e-60 234.6 145 77.9
Rhsim12G0200100 Rhododendron simsii HOM05D003870 ORTHO05D004567 8.3e-60 233.8 145 81.4
CDE02G4568 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 2.7e-58 228.8 146 77.4
unitig_0.g2124 Utricularia gibba HOM05D003870 ORTHO05D004567 3.5e-58 228.4 145 79.3
Oeu024071.1 Olea europaea HOM05D003870 ORTHO05D004567 4.6e-58 228.0 136 83.1
ATR0315G019 Amborella trichopoda HOM05D003870 ORTHO05D004567 1.5e-56 223.0 145 80.7
Hund00643 Selenicereus undatus HOM05D003870 ORTHO05D004567 2.5e-56 222.2 147 76.9
Sc15g0001350 Simmondsia chinensis HOM05D003870 ORTHO05D004567 5.6e-56 221.1 146 79.5
Actinidia32731 Actinidia chinensis HOM05D003870 ORTHO05D004567 1.6e-55 219.5 139 79.9
CDE04G3706 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 2.1e-55 219.2 146 74.7
Nitab4.5_0001968g0090 Nicotiana tabacum HOM05D003870 ORTHO05D004567 2.4e-54 215.7 146 79.5
Zm00001eb295610 Zea mays HOM05D003870 ORTHO05D004567 4.0e-54 214.9 146 76.7
Os05g0560000 Oryza sativa ssp. japonica HOM05D003870 ORTHO05D004567 5.2e-54 214.5 143 74.8
TPR.G37200 Trifolium pratense HOM05D003870 ORTHO05D004567 1.2e-50 203.4 147 74.8
Sopen00g011820 Solanum pennellii HOM05D003870 ORTHO05D004567 1.6e-50 203.0 103 95.1
AUR62016482 Chenopodium quinoa HOM05D003870 ORTHO05D004567 7.8e-50 200.7 145 71.7
AL1G60400 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 5.6e-48 194.5 103 88.3
BcaC08g43379 Brassica carinata HOM05D003870 ORTHO05D004567 3.1e-46 188.7 102 87.3
SEGI_14279 Sequoiadendron giganteum HOM05D003870 ORTHO05D004567 9.9e-45 183.7 147 66.0
HPP92_021482 Vanilla planifolia HOM05D003870 ORTHO05D004567 1.5e-40 169.9 137 70.1
Duzib192G0641 Durio zibethinus HOM05D003870 ORTHO05D004567 2.1e-39 166.0 98 83.7
Dinv30483 Davidia involucrata HOM05D003870 ORTHO05D004567 9.0e-38 160.6 85 91.8
Pp3c15_19390 Physcomitrium patens HOM05D003870 ORTHO05D004567 2.0e-37 159.5 129 58.1
Pp3c9_19520 Physcomitrium patens HOM05D003870 ORTHO05D004567 4.5e-37 158.3 140 57.1
MD17G1191200 Malus domestica HOM05D003870 ORTHO05D004567 4.9e-36 154.8 85 88.2
Mapoly0009s0008 Marchantia polymorpha HOM05D003870 ORTHO05D004567 1.4e-35 153.3 146 58.9
CBR_g31512 Chara braunii HOM05D003870 ORTHO05D004567 6.0e-34 147.9 145 57.2
BolC1t04783H Brassica oleracea HOM05D003870 ORTHO05D004567 1.0e-33 147.1 145 58.6
C01p48190 Brassica napus HOM05D003870 ORTHO05D004567 3.9e-33 145.2 145 57.9
Peaxi162Scf00207g00951 Petunia axillaris HOM05D003870 ORTHO05D004567 1.5e-32 143.3 146 63.0
HanXRQChr10g0313451 Helianthus annuus HOM05D003870 ORTHO05D004567 2.4e-30 136.0 85 76.5
ECA247G2331 Erigeron canadensis HOM05D003870 ORTHO05D004567 1.4e-27 126.7 72 80.6
MD17G1191400 Malus domestica HOM05D003870 ORTHO05D004567 7.4e-24 114.4 60 95.0
MD10G1187500 Malus domestica HOM05D003870 ORTHO05D004567 1.2e-21 107.1 74 73.0
MD14G1193300 Malus domestica HOM05D003870 ORTHO05D004567 5.5e-19 98.2 74 70.3
MCO07G351 Micromonas commoda HOM05D003870 ORTHO05D004567 3.3e-16 89.0 126 41.3
unitig_747.g21485 Utricularia gibba HOM05D003870 ORTHO05D004567 1.0e-12 77.4 142 38.0
Zm00001eb343540 Zea mays HOM05D003870 ORTHO05D004567 2.9e-12 75.9 131 45.0
Cre07.g330250 Chlamydomonas reinhardtii HOM05D003870 ORTHO05D004567 9.4e-11 70.9 99 39.4
MD02G1178900 Malus domestica HOM05D003870 ORTHO05D004567 2.7e-10 69.3 33 93.9
TAR629G2234 Trochodendron aralioides HOM05D002207 ORTHO05D002250 6.9e-06 54.7 43 69.8


User provided reference genes

Program Settings