Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 3.3e-43 177.9 89 100.0
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 2.5e-22 108.6 67 79.1
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 1.5e-19 99.4 65 76.9
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 1.7e-18 95.9 59 74.6
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 2.2e-18 95.5 63 71.4
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 2.2e-18 95.5 57 78.9
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 2.2e-18 95.5 57 78.9
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 2.8e-18 95.1 60 73.3
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 3.7e-18 94.7 60 73.3
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 4.8e-18 94.4 63 73.0
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 4.8e-18 94.4 57 77.2
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 4.8e-18 94.4 63 69.8
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 6.3e-18 94.0 59 72.9
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 6.3e-18 94.0 59 72.9
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 6.3e-18 94.0 59 72.9
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 1.1e-17 93.2 67 67.2
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.1e-17 93.2 59 71.2
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 1.1e-17 93.2 67 64.2
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 1.1e-17 93.2 58 74.1
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 1.8e-17 92.4 59 71.2
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 2.4e-17 92.0 63 66.7
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 2.4e-17 92.0 63 66.7
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 3.1e-17 91.7 59 72.9
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 3.1e-17 91.7 62 67.7
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 4.1e-17 91.3 67 65.7
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 5.4e-17 90.9 67 67.2
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 5.4e-17 90.9 66 68.2
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 7.0e-17 90.5 60 68.3
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 7.0e-17 90.5 63 65.1
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 1.2e-16 89.7 56 71.4
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 1.2e-16 89.7 63 65.1
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 1.6e-16 89.4 53 73.6
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 1.6e-16 89.4 64 65.6
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 2.0e-16 89.0 67 65.7
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 2.0e-16 89.0 59 67.8
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 2.7e-16 88.6 59 67.8
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 2.7e-16 88.6 57 71.9
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 4.5e-16 87.8 59 66.1
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 4.5e-16 87.8 64 62.5
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 4.5e-16 87.8 59 64.4
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 4.5e-16 87.8 61 65.6
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 5.9e-16 87.4 67 62.7
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 5.9e-16 87.4 65 66.2
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 5.9e-16 87.4 66 63.6
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 5.9e-16 87.4 66 63.6
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 7.7e-16 87.0 63 61.9
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 7.7e-16 87.0 58 70.7
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 7.7e-16 87.0 64 62.5
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 7.7e-16 87.0 57 71.9
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 1.0e-15 86.7 60 68.3
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 1.7e-15 85.9 60 68.3
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 1.7e-15 85.9 61 63.9
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 1.7e-15 85.9 57 68.4
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 1.7e-15 85.9 59 66.1
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 1.7e-15 85.9 63 61.9
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 2.3e-15 85.5 64 60.9
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 2.3e-15 85.5 64 60.9
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 2.3e-15 85.5 59 66.1
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 2.9e-15 85.1 60 65.0
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 2.9e-15 85.1 60 65.0
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 3.8e-15 84.7 59 67.8
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 3.8e-15 84.7 61 62.3
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 5.0e-15 84.3 57 66.7
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 5.0e-15 84.3 48 72.9
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 5.0e-15 84.3 59 64.4
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 6.6e-15 84.0 59 62.7
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 6.6e-15 84.0 64 64.1
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 8.6e-15 83.6 59 64.4
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 1.1e-14 83.2 62 59.7
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 1.9e-14 82.4 63 58.7
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 2.5e-14 82.0 61 60.7
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 2.5e-14 82.0 61 60.7
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 2.5e-14 82.0 59 64.4
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 2.5e-14 82.0 59 64.4
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 3.3e-14 81.6 66 59.1
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 3.3e-14 81.6 66 59.1
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 3.3e-14 81.6 62 58.1
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 4.2e-14 81.3 59 64.4
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 5.5e-14 80.9 61 59.0
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 7.2e-14 80.5 66 57.6
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 9.5e-14 80.1 63 61.9
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 9.5e-14 80.1 65 61.5
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 1.2e-13 79.7 67 61.2
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 1.2e-13 79.7 65 61.5
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.2e-13 79.7 67 61.2
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 1.2e-13 79.7 59 62.7
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 1.2e-13 79.7 67 58.2
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 1.6e-13 79.3 58 65.5
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 1.6e-13 79.3 58 60.3
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 1.6e-13 79.3 58 60.3
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 1.6e-13 79.3 57 61.4
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 2.1e-13 79.0 61 59.0
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 2.1e-13 79.0 65 60.0
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 2.1e-13 79.0 55 65.5
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 2.1e-13 79.0 64 60.9
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 2.8e-13 78.6 58 63.8
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 6.1e-13 77.4 61 60.7
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 8.0e-13 77.0 80 48.8
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 8.0e-13 77.0 49 69.4
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 1.4e-12 76.3 67 56.7
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 1.4e-12 76.3 67 56.7
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 1.8e-12 75.9 66 53.0
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 2.3e-12 75.5 54 64.8
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 2.3e-12 75.5 89 46.1
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 4.0e-12 74.7 55 58.2
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 4.0e-12 74.7 55 58.2
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 5.2e-12 74.3 66 53.0
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 5.7e-11 70.9 55 54.5
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 5.7e-11 70.9 55 54.5
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.2e-10 68.9 60 56.7
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 1.1e-09 66.6 62 48.4
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 2.4e-09 65.5 34 76.5
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 4.1e-09 64.7 33 78.8
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 4.1e-09 64.7 46 58.7
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 7.0e-09 63.9 39 69.2
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 1.2e-08 63.2 46 60.9
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 2.0e-08 62.4 32 81.2
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 3.5e-08 61.6 48 52.1
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 3.5e-08 61.6 63 42.9
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 4.5e-08 61.2 34 73.5
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 7.8e-08 60.5 41 68.3
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 1.0e-07 60.1 34 67.6
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 3.9e-07 58.2 76 43.4
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 5.0e-07 57.8 32 71.9
CBR_g29697 Chara braunii HOM05D035488 ORTHO05D007319 1.5e-06 56.2 64 43.8
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 2.5e-06 55.5 34 64.7
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 5.6e-06 54.3 74 43.2
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 5.6e-06 54.3 30 76.7
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 7.3e-06 53.9 34 64.7


User provided reference genes

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