Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 0.0e+00 2226.4 1153 100.0
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 0.0e+00 1521.9 1150 69.5
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 0.0e+00 1366.3 1161 62.8
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 0.0e+00 1358.2 1163 62.4
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 0.0e+00 1355.5 1159 61.8
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 0.0e+00 1348.2 1164 62.5
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 0.0e+00 1345.5 1147 62.5
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 0.0e+00 1338.9 1152 62.3
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 0.0e+00 1328.5 1231 59.2
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 0.0e+00 1324.3 1161 60.9
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1324.3 1154 61.3
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 0.0e+00 1315.1 1159 61.6
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 0.0e+00 1313.9 1166 60.3
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 0.0e+00 1313.9 1150 60.6
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 0.0e+00 1305.8 1165 61.3
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 0.0e+00 1298.9 1168 59.6
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1291.6 1168 59.4
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 0.0e+00 1267.3 1152 58.9
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 0.0e+00 1253.4 1155 58.4
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 0.0e+00 1242.3 1164 56.8
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1235.7 1153 57.6
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 0.0e+00 1228.0 1097 61.1
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 0.0e+00 1222.6 1150 56.5
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 0.0e+00 1209.1 1160 55.6
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 0.0e+00 1206.8 1152 56.5
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1205.7 1107 58.6
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 0.0e+00 1190.3 1160 54.8
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1186.4 1154 56.1
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1181.0 1151 55.8
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 0.0e+00 1178.3 1163 55.3
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1170.6 1151 56.5
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 0.0e+00 1167.5 1216 52.9
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 0.0e+00 1164.4 1164 56.2
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1164.1 1160 55.3
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1163.3 1162 54.7
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 0.0e+00 1161.0 1163 56.2
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 0.0e+00 1161.0 1150 55.6
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 0.0e+00 1159.8 1157 54.4
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1151.3 1137 54.8
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 0.0e+00 1139.8 1148 53.5
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1136.3 1149 53.8
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 0.0e+00 1133.2 1119 54.5
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 0.0e+00 1126.3 1148 51.7
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1122.5 1160 53.8
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 0.0e+00 1121.7 1148 52.0
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 0.0e+00 1120.9 1152 52.7
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 0.0e+00 1114.8 1160 52.6
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 0.0e+00 1109.0 1105 54.6
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 0.0e+00 1108.6 1069 56.0
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 0.0e+00 1101.3 1160 52.4
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 0.0e+00 1099.7 1146 52.3
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 0.0e+00 1099.7 1160 52.2
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 0.0e+00 1092.8 1145 52.5
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 0.0e+00 1087.0 1158 52.7
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 3.5e-310 1068.5 1152 51.4
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 2.3e-309 1065.8 1160 51.6
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 6.6e-309 1064.3 1236 49.8
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 5.2e-306 1054.7 1161 49.8
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 1.3e-304 1050.0 1158 50.0
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 1.7e-304 1049.7 1159 49.6
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 7.8e-302 1040.8 1160 49.1
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 5.1e-301 1038.1 1160 49.1
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 1.1e-300 1036.9 1159 49.0
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 1.7e-296 1023.1 1143 49.9
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 4.6e-294 1015.0 1157 48.6
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 6.0e-294 1014.6 1106 52.4
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 1.0e-293 1013.8 1149 49.3
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 3.0e-293 1012.3 1047 54.3
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 6.6e-293 1011.1 1134 49.1
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 1.1e-292 1010.4 1158 48.5
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 1.2e-291 1006.9 1161 48.1
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 6.2e-291 1004.6 1153 48.5
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 2.4e-290 1002.7 1158 48.4
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 3.1e-290 1002.3 1160 47.8
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 5.8e-289 998.0 1011 52.9
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 3.2e-287 992.3 1159 48.1
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 6.6e-285 984.6 1150 48.2
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 2.5e-284 982.6 1155 47.5
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.1e-279 967.2 1150 48.0
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 3.2e-279 965.7 1152 47.9
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 5.4e-279 964.9 1075 50.1
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 9.6e-276 954.1 1178 46.9
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 1.6e-275 953.4 1040 49.3
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 3.5e-270 935.6 953 53.2
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 1.3e-269 933.7 1140 46.5
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 2.5e-252 876.3 1162 44.8
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 5.3e-250 868.6 1150 44.1
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 2.6e-249 866.3 1069 46.4
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 1.0e-248 864.4 1138 44.1
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 9.7e-244 847.8 938 49.5
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 2.4e-242 843.2 1158 42.5
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 9.7e-236 821.2 1159 40.8
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 3.6e-230 802.7 1152 42.8
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 1.8e-226 790.4 905 46.6
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 1.5e-175 621.3 1052 38.9
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 2.1e-145 521.2 1198 32.6
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 6.9e-141 506.1 645 44.5
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 8.2e-134 482.6 1208 30.5
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.0e-127 461.5 437 56.5
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 7.7e-124 449.5 516 49.0
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 1.7e-123 448.4 695 39.1
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.5e-122 445.3 457 54.9
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.0e-120 439.1 526 45.6
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 1.9e-114 418.3 1139 29.0
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.4e-109 401.4 337 60.8
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 3.0e-104 384.4 454 48.2
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 1.7e-94 352.1 442 46.6
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 3.0e-91 341.3 232 72.0
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 9.2e-77 293.1 232 64.7
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 2.7e-68 265.0 1295 23.9
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 1.1e-66 259.6 315 50.8
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 2.1e-65 255.4 155 78.1
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 1.7e-62 245.7 269 50.9
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 4.9e-62 244.2 344 43.9
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.1e-60 238.8 203 61.1
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 4.0e-56 224.6 180 61.1
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.3e-49 203.0 227 51.1
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 8.4e-46 190.3 184 57.6
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 4.9e-38 164.5 188 47.9
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 3.5e-36 158.3 159 50.9
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.0e-35 156.8 116 67.2
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 1.7e-30 139.4 140 53.6
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 1.7e-30 139.4 140 53.6
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 1.7e-30 139.4 138 52.9
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.9e-29 136.0 96 71.9
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.9e-29 136.0 96 71.9
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 1.3e-27 129.8 132 53.0
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 6.7e-27 127.5 96 66.7
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 8.7e-27 127.1 347 28.0
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 5.7e-26 124.4 165 44.2
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 3.7e-25 121.7 180 42.8
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 6.3e-25 120.9 95 63.2
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 2.4e-24 119.0 127 52.0
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.2e-23 116.7 123 49.6
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 3.4e-23 115.2 257 30.0
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 1.7e-22 112.8 119 47.1
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 1.1e-21 110.2 74 70.3
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 9.4e-21 107.1 63 65.1
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 4.3e-18 98.2 136 44.1
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 1.8e-16 92.8 73 65.8
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 1.2e-15 90.1 151 34.4
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 1.1e-13 83.6 92 50.0
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 4.2e-13 81.6 64 65.6
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 9.4e-13 80.5 68 61.8
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 7.9e-12 77.4 76 56.6
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 3.0e-11 75.5 90 44.4
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 6.7e-11 74.3 55 67.3
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 5.7e-10 71.2 62 58.1
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 1.1e-08 67.0 48 60.4
TPR.G18859 Trifolium pratense HOM05D002451 ORTHO05D005601 1.6e-07 63.2 114 39.5


User provided reference genes

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