Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G033400 Manihot esculenta HOM05D006741 ORTHO05D008434 2.3e-285 984.9 517 100.0
Potri.013G040800 Populus trichocarpa HOM05D006741 ORTHO05D008434 6.9e-157 558.1 518 60.6
Potri.005G053300 Populus trichocarpa HOM05D006741 ORTHO05D008434 1.1e-154 550.8 512 60.7
Thecc.06G100200 Theobroma cacao HOM05D006741 ORTHO05D008434 1.5e-151 540.4 522 58.4
Cfa003646 Carpinus fangiana HOM05D006741 ORTHO05D008434 1.3e-150 537.3 521 58.3
Sabra05G0046800 Salix brachista HOM05D006741 ORTHO05D008434 9.0e-149 531.2 514 58.9
QL05p019947 Quercus lobata HOM05D006741 ORTHO05D008434 1.0e-147 527.7 525 56.6
COL.COLO4_30514 Corchorus olitorius HOM05D006741 ORTHO05D008434 2.2e-147 526.6 521 56.8
CiPaw.01G231300 Carya illinoinensis HOM05D006741 ORTHO05D008434 2.5e-146 523.1 520 56.3
Sabra13G0037700 Salix brachista HOM05D006741 ORTHO05D008434 8.7e-144 514.6 492 58.5
Duzib235G1269 Durio zibethinus HOM05D006741 ORTHO05D008434 2.4e-141 506.5 523 57.0
Duzib192G0766 Durio zibethinus HOM05D006741 ORTHO05D008434 3.8e-139 499.2 520 56.3
TWI75G1374 Tripterygium wilfordii HOM05D006741 ORTHO05D008434 2.1e-137 493.4 518 56.2
Haze_15849 Corylus avellana HOM05D006741 ORTHO05D008434 2.7e-137 493.0 429 61.3
Atru.chr1.3525 Acer truncatum HOM05D006741 ORTHO05D008434 1.0e-131 474.6 524 55.0
CSS0005978 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 3.9e-128 462.6 522 53.1
CSS0034583 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 1.5e-127 460.7 522 52.9
Cpa.g.sc25.10 Carica papaya HOM05D006741 ORTHO05D008434 3.3e-127 459.5 513 51.1
Gohir.A06G189500 Gossypium hirsutum HOM05D006741 ORTHO05D008434 3.7e-126 456.1 524 52.7
TAR636G1866 Trochodendron aralioides HOM05D006741 ORTHO05D008434 3.7e-126 456.1 525 51.6
Dinv30435 Davidia involucrata HOM05D006741 ORTHO05D008434 4.5e-124 449.1 498 53.0
Gohir.D06G197900 Gossypium hirsutum HOM05D006741 ORTHO05D008434 4.2e-122 442.6 524 51.9
Gorai.010G230700 Gossypium raimondii HOM05D006741 ORTHO05D008434 7.2e-122 441.8 524 51.7
Actinidia09006 Actinidia chinensis HOM05D006741 ORTHO05D008434 2.1e-121 440.3 526 50.2
Actinidia39136 Actinidia chinensis HOM05D006741 ORTHO05D008434 8.8e-120 434.9 525 49.7
Rhsim08G0227700 Rhododendron simsii HOM05D006741 ORTHO05D008434 2.4e-117 426.8 483 51.3
Prupe.3G058900 Prunus persica HOM05D006741 ORTHO05D008434 5.9e-116 422.2 527 50.5
MD17G1183900 Malus domestica HOM05D006741 ORTHO05D008434 6.1e-113 412.1 518 50.2
CANSAT56G2677 Cannabis sativa HOM05D006741 ORTHO05D008434 3.3e-111 406.4 529 47.1
vmacro17014 Vaccinium macrocarpon HOM05D006741 ORTHO05D008434 2.8e-110 403.3 446 52.2
MD09G1202700 Malus domestica HOM05D006741 ORTHO05D008434 6.3e-110 402.1 518 51.5
PGR102G3207 Punica granatum HOM05D006741 ORTHO05D008434 9.1e-109 398.3 526 48.1
Nn6g35322 Nelumbo nucifera HOM05D006741 ORTHO05D008434 2.9e-107 393.3 529 47.1
Lalb_Chr01g0013161 Lupinus albus HOM05D006741 ORTHO05D008434 7.2e-106 388.7 478 49.4
Sed0020930 Sechium edule HOM05D006741 ORTHO05D008434 3.6e-105 386.3 539 45.5
Eucgr.J02937 Eucalyptus grandis HOM05D006741 ORTHO05D008434 1.2e-103 381.3 418 51.4
arahy.Tifrunner.gnm1.ann1.CS2PXA Arachis hypogaea HOM05D006741 ORTHO05D008434 4.4e-103 379.4 459 50.1
Oeu017120.1 Olea europaea HOM05D006741 ORTHO05D008434 1.3e-102 377.9 521 46.4
arahy.Tifrunner.gnm1.ann1.X4D5DL Arachis hypogaea HOM05D006741 ORTHO05D008434 2.2e-102 377.1 466 49.1
ClCG07G013320 Citrullus lanatus HOM05D006741 ORTHO05D008434 2.4e-101 373.6 577 44.0
MELO3C013001.2 Cucumis melo HOM05D006741 ORTHO05D008434 1.3e-99 367.9 566 42.6
CsaV3_3G023590 Cucumis sativus L. HOM05D006741 ORTHO05D008434 7.2e-98 362.1 487 45.8
Lj3g0008384 Lotus japonicus HOM05D006741 ORTHO05D008434 7.2e-98 362.1 475 46.9
Ciclev10027417m.g Citrus clementina HOM05D006741 ORTHO05D008434 2.1e-97 360.5 514 44.6
GSVIVG01016979001 Vitis vinifera HOM05D006741 ORTHO05D008434 2.8e-97 360.1 512 44.3
Medtr8g014490 Medicago truncatula HOM05D006741 ORTHO05D008434 2.2e-94 350.5 477 45.5
TPR.G26946 Trifolium pratense HOM05D006741 ORTHO05D008434 1.8e-93 347.4 501 44.9
Ca_23263_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 4.1e-93 346.3 444 47.5
Ca_23272_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 4.1e-93 346.3 444 47.5
MSTRG.11026 Avicennia marina HOM05D006741 ORTHO05D008434 2.9e-91 340.1 458 43.4
Aqoxy7G03978 Aquilegia oxysepala HOM05D006741 ORTHO05D008434 7.3e-90 335.5 523 42.4
Psat4g197400 Pisum sativum HOM05D006741 ORTHO05D008434 1.6e-89 334.3 449 45.4
RcHm_v2.0_Chr2g0140551 Rosa chinensis HOM05D006741 ORTHO05D008434 4.7e-89 332.8 518 45.4
Sc12g0010170 Simmondsia chinensis HOM05D006741 ORTHO05D008434 8.0e-89 332.0 496 43.8
PSO210G6928 Papaver somniferum HOM05D006741 ORTHO05D008434 2.3e-88 330.5 495 44.8
MBI01_g10133_MAGBIO Magnolia biondii HOM05D006741 ORTHO05D008434 3.4e-87 326.6 497 42.1
DCAR_023081 Daucus carota HOM05D006741 ORTHO05D008434 7.5e-87 325.5 520 40.8
PSO210G4778 Papaver somniferum HOM05D006741 ORTHO05D008434 9.8e-87 325.1 460 46.3
Cc04_g02540 Coffea canephora HOM05D006741 ORTHO05D008434 7.0e-85 318.9 511 41.7
Migut.I00896 Erythranthe guttata HOM05D006741 ORTHO05D008434 2.7e-84 317.0 515 41.2
Glyma.08G200900 Glycine max HOM05D006741 ORTHO05D008434 1.7e-83 314.3 457 45.7
Lj9A513G60 Lonicera japonica HOM05D006741 ORTHO05D008434 2.3e-83 313.9 468 43.4
FvH4_6g32410 Fragaria vesca HOM05D006741 ORTHO05D008434 1.2e-81 308.1 526 45.2
FAN14G5382 Fragaria x ananassa HOM05D006741 ORTHO05D008434 1.1e-80 305.1 525 42.7
SGA_v2.0_scaffold69G23318 Striga asiatica HOM05D006741 ORTHO05D008434 1.4e-80 304.7 525 40.4
THA.LOC104806335 Tarenaya hassleriana HOM05D006741 ORTHO05D008434 1.8e-80 304.3 453 41.9
ClCG00G003340 Citrullus lanatus HOM05D006741 ORTHO05D008434 5.2e-80 302.8 444 43.7
Nitab4.5_0001172g0120 Nicotiana tabacum HOM05D006741 ORTHO05D008434 5.2e-80 302.8 555 40.5
Glyma.07G015400 Glycine max HOM05D006741 ORTHO05D008434 3.4e-79 300.1 439 44.0
FAN05G1069 Fragaria x ananassa HOM05D006741 ORTHO05D008434 2.9e-78 297.0 525 41.9
Hund28870 Selenicereus undatus HOM05D006741 ORTHO05D008434 8.3e-78 295.4 535 41.7
Hund28829 Selenicereus undatus HOM05D006741 ORTHO05D008434 1.2e-76 291.6 526 41.6
Phvul.010G145200 Phaseolus vulgaris HOM05D006741 ORTHO05D008434 2.7e-76 290.4 448 42.6
PGSC0003DMG400026441 Solanum tuberosum HOM05D006741 ORTHO05D008434 6.0e-76 289.3 499 39.7
VMungo0331G0583 Vigna mungo HOM05D006741 ORTHO05D008434 1.7e-75 287.7 461 41.6
FAN02G4526 Fragaria x ananassa HOM05D006741 ORTHO05D008434 3.9e-75 286.6 525 43.0
Solyc12g044620.2 Solanum lycopersicum HOM05D006741 ORTHO05D008434 1.6e-73 281.2 572 37.2
AL6G47480 Arabidopsis lyrata HOM05D006741 ORTHO05D008434 1.8e-72 277.7 460 40.2
Nn8g39070 Nelumbo nucifera HOM05D006741 ORTHO05D008434 1.8e-72 277.7 348 46.6
Aa31LG9G10130 Aethionema arabicum HOM05D006741 ORTHO05D008434 6.8e-72 275.8 466 41.4
Nitab4.5_0004241g0050 Nicotiana tabacum HOM05D006741 ORTHO05D008434 5.8e-71 272.7 475 40.0
Sopen12g023080 Solanum pennellii HOM05D006741 ORTHO05D008434 5.8e-71 272.7 572 37.1
AT4G12540 Arabidopsis thaliana HOM05D006741 ORTHO05D008434 2.9e-70 270.4 457 40.3
Carub.0006s3171 Capsella rubella HOM05D006741 ORTHO05D008434 2.9e-70 270.4 466 39.3
Peaxi162Scf00177g00125 Petunia axillaris HOM05D006741 ORTHO05D008434 6.4e-70 269.2 456 40.1
EL10Ac3g05317 Beta vulgaris HOM05D006741 ORTHO05D008434 2.1e-68 264.2 523 37.7
AUR62031924 Chenopodium quinoa HOM05D006741 ORTHO05D008434 2.1e-68 264.2 536 36.8
Thhalv10028639m.g Eutrema salsugineum HOM05D006741 ORTHO05D008434 1.3e-67 261.5 462 39.4
Ah.01g005790 Amaranthus hybridus HOM05D006741 ORTHO05D008434 1.1e-66 258.5 528 37.3
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.6e-65 254.6 502 39.8
HanXRQChr09g0276261 Helianthus annuus HOM05D006741 ORTHO05D008434 1.8e-64 251.1 464 39.7
CARHR253650 Cardamine hirsuta HOM05D006741 ORTHO05D008434 3.1e-64 250.4 443 39.3
ECA232G4726 Erigeron canadensis HOM05D006741 ORTHO05D008434 4.4e-63 246.5 479 37.4
Sp6g04980 Schrenkiella parvula HOM05D006741 ORTHO05D008434 5.8e-63 246.1 475 36.6
SpUn0055_0020 Schrenkiella parvula HOM05D006741 ORTHO05D008434 9.9e-63 245.4 466 37.1
Hma1.2p1_0430F.1_g151390 Hydrangea macrophylla HOM05D006741 ORTHO05D008434 2.4e-61 240.7 515 37.1
Lsat_1_v5_gn_4_97420 Lactuca sativa HOM05D006741 ORTHO05D008434 5.6e-58 229.6 477 36.3
A09p26830 Brassica napus HOM05D006741 ORTHO05D008434 5.3e-56 223.0 443 38.6
BcaC04g21238 Brassica carinata HOM05D006741 ORTHO05D008434 2.2e-54 217.6 445 38.4
C09p34000 Brassica napus HOM05D006741 ORTHO05D008434 2.2e-54 217.6 445 38.4
BolC9t56238H Brassica oleracea HOM05D006741 ORTHO05D008434 2.2e-54 217.6 445 38.4
CDE02G1085 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 2.2e-54 217.6 449 37.9
BraA09t38254Z Brassica rapa HOM05D006741 ORTHO05D008434 6.4e-54 216.1 456 37.5
Dinv37976 Davidia involucrata HOM05D006741 ORTHO05D008434 6.0e-52 209.5 249 52.2
Cpa.g.sc25.28 Carica papaya HOM05D006741 ORTHO05D008434 3.9e-51 206.8 284 43.0
TAR624G0518 Trochodendron aralioides HOM05D006741 ORTHO05D008434 2.5e-42 177.6 254 43.3
Os05g0532500 Oryza sativa ssp. japonica HOM05D006741 ORTHO05D008434 5.3e-40 169.9 471 29.5
ATR0705G093 Amborella trichopoda HOM05D006741 ORTHO05D008434 1.9e-37 161.4 360 35.3
CDE04G0136 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 3.3e-26 124.0 217 42.4
Zm00001eb353790 Zea mays HOM05D006741 ORTHO05D008434 3.7e-25 120.6 509 27.1
unitig_748.g7440 Utricularia gibba HOM05D006741 ORTHO05D008434 2.2e-22 111.3 162 43.2
unitig_748.g7441 Utricularia gibba HOM05D006741 ORTHO05D008434 1.1e-18 99.0 226 34.5
BcaC01g04588 Brassica carinata HOM05D006741 ORTHO05D008434 1.7e-17 95.1 278 31.3
Actinidia32099 Actinidia chinensis HOM05D006741 ORTHO05D008434 7.2e-13 79.7 488 25.8
CDE04G1568 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 6.7e-11 73.2 102 42.2
C03p36010 Brassica napus HOM05D006741 ORTHO05D008434 1.2e-07 62.4 54 64.8
BolC3t15911H Brassica oleracea HOM05D006741 ORTHO05D008434 1.2e-07 62.4 54 64.8
ECA234G0697 Erigeron canadensis HOM05D006741 ORTHO05D008434 3.8e-06 57.4 114 33.3


User provided reference genes

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