Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 3.1e-67 258.8 187 100.0
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 8.3e-52 207.6 187 86.6
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 3.4e-45 185.7 193 78.2
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 6.3e-44 181.4 187 75.9
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 2.0e-42 176.4 189 79.4
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 1.7e-41 173.3 197 76.1
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 2.9e-41 172.6 185 73.5
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 1.1e-40 170.6 181 76.8
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 1.5e-40 170.2 185 71.4
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 2.5e-40 169.5 181 76.2
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 4.3e-40 168.7 181 59.1
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 9.5e-40 167.5 181 76.2
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 1.2e-39 167.2 180 76.7
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 1.8e-38 163.3 197 73.6
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 5.2e-38 161.8 191 74.3
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 8.9e-38 161.0 185 67.0
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 2.6e-37 159.5 103 81.6
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 2.6e-37 159.5 207 70.0
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 7.5e-37 157.9 187 75.9
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 1.3e-36 157.1 187 73.3
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 1.7e-36 156.8 201 65.7
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 1.7e-36 156.8 200 62.5
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 2.9e-36 156.0 188 62.8
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 4.9e-36 155.2 192 67.2
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 6.4e-36 154.8 185 60.0
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 5.4e-35 151.8 99 79.8
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 1.2e-34 150.6 103 76.7
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 2.7e-34 149.4 101 77.2
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 3.5e-34 149.1 199 71.4
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 4.6e-34 148.7 178 64.6
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 4.6e-34 148.7 178 57.3
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 4.6e-34 148.7 192 66.7
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 5.9e-34 148.3 100 76.0
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 5.9e-34 148.3 187 73.3
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 7.8e-34 147.9 101 75.2
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 7.8e-34 147.9 188 66.0
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 1.0e-33 147.5 219 65.3
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 1.3e-33 147.1 181 59.7
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 1.7e-33 146.7 101 73.3
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 1.7e-33 146.7 192 65.1
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 1.7e-33 146.7 192 64.6
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 1.7e-33 146.7 184 67.4
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 2.3e-33 146.4 101 75.2
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 3.0e-33 146.0 99 75.8
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 3.0e-33 146.0 187 66.8
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 3.9e-33 145.6 185 54.1
Peaxi162Scf00195g00313 Petunia axillaris HOM05D006504 ORTHO05D007867 1.5e-32 143.7 100 77.0
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 1.9e-32 143.3 167 65.3
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 4.3e-32 142.1 167 57.5
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 7.3e-32 141.4 101 72.3
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 9.5e-32 141.0 101 71.3
ECA234G1551 Erigeron canadensis HOM05D000001 ORTHO05D009948 1.2e-31 140.6 101 72.3
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 2.8e-31 139.4 99 74.7
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 3.6e-31 139.0 97 73.2
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 4.7e-31 138.7 85 78.8
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 4.7e-31 138.7 192 63.0
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 6.2e-31 138.3 99 73.7
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 8.0e-31 137.9 101 69.3
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 1.4e-30 137.1 101 69.3
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 1.4e-30 137.1 97 72.2
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 1.4e-30 137.1 101 69.3
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 3.1e-30 136.0 185 62.2
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 4.0e-30 135.6 101 68.3
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 5.2e-30 135.2 108 70.4
MD09G1192700 Malus domestica HOM05D006504 ORTHO05D007867 3.4e-29 132.5 174 69.5
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 4.4e-29 132.1 101 66.3
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 4.4e-29 132.1 85 78.8
HPP92_023888 Vanilla planifolia HOM05D006504 ORTHO05D007867 7.5e-29 131.3 185 53.0
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 1.7e-28 130.2 90 75.6
FAN21G2275 Fragaria x ananassa HOM05D006504 ORTHO05D007867 2.2e-28 129.8 190 64.7
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 2.9e-28 129.4 85 77.6
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 2.9e-28 129.4 84 77.4
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 1.4e-27 127.1 101 65.3
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 2.4e-27 126.3 87 72.4
ATR0661G108 Amborella trichopoda HOM05D006504 ORTHO05D007867 2.4e-27 126.3 99 65.7
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 7.0e-27 124.8 100 66.0
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 2.0e-26 123.2 100 65.0
MELO3C030574.2 Cucumis melo HOM05D006504 ORTHO05D007867 6.0e-26 121.7 83 75.9
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 7.8e-26 121.3 100 64.0
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 1.7e-25 120.2 100 63.0
Aa31LG10G870 Aethionema arabicum HOM05D006504 ORTHO05D007867 6.6e-25 118.2 128 53.1
Os01g0501000 Oryza sativa ssp. japonica HOM05D006504 ORTHO05D007867 1.1e-24 117.5 99 60.6
HPP92_023833 Vanilla planifolia HOM05D006504 ORTHO05D007867 1.1e-24 117.5 99 58.6
BolC6t36770H Brassica oleracea HOM05D006504 ORTHO05D007867 8.9e-22 107.8 101 62.4
Gohir.A10G058600 Gossypium hirsutum HOM05D006504 ORTHO05D007867 2.0e-21 106.7 154 53.2
BraA05t20659Z Brassica rapa HOM05D006504 ORTHO05D007867 4.4e-21 105.5 101 61.4
Rhsim12G0206400 Rhododendron simsii HOM05D006504 ORTHO05D007867 5.8e-21 105.1 212 59.0
BcaB03g13872 Brassica carinata HOM05D006504 ORTHO05D007867 7.5e-21 104.8 98 58.2
ATR0800G060 Amborella trichopoda HOM05D006504 ORTHO05D007867 9.8e-21 104.4 81 65.4
A08p01030 Brassica napus HOM05D001264 ORTHO05D007867 2.2e-20 103.2 83 67.5
C03p92210 Brassica napus HOM05D001264 ORTHO05D007867 2.2e-20 103.2 83 67.5
CDE06G0601 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 2.2e-20 103.2 84 64.3
BcaC06g35444 Brassica carinata HOM05D006504 ORTHO05D007867 3.7e-20 102.4 98 53.1
C07p16100 Brassica napus HOM05D006504 ORTHO05D007867 3.7e-20 102.4 98 53.1
BolC7t42095H Brassica oleracea HOM05D006504 ORTHO05D007867 3.7e-20 102.4 98 53.1
A07p10460 Brassica napus HOM05D006504 ORTHO05D007867 4.9e-20 102.1 96 53.1
BraA07t28846Z Brassica rapa HOM05D006504 ORTHO05D007867 4.9e-20 102.1 96 53.1
QL05p000679 Quercus lobata HOM05D006504 ORTHO05D007867 6.4e-20 101.7 87 66.7
QL05p000687 Quercus lobata HOM05D006504 ORTHO05D007867 6.4e-20 101.7 87 66.7
Carub.0001s2784 Capsella rubella HOM05D006504 ORTHO05D007867 8.3e-20 101.3 101 54.5
Mapoly0004s0244 Marchantia polymorpha HOM05D006504 ORTHO05D007867 2.7e-18 96.3 100 51.0
ClCG07G013760 Citrullus lanatus HOM05D006504 ORTHO05D007867 7.8e-18 94.7 81 64.2
TPR.G19289 Trifolium pratense HOM05D006504 ORTHO05D007867 1.3e-17 94.0 182 60.4
C06p15780 Brassica napus HOM05D001264 ORTHO05D001167 1.9e-16 90.1 84 65.5
SEGI_28258 Sequoiadendron giganteum HOM05D006504 ORTHO05D007867 4.3e-16 89.0 87 52.9
A05p17670 Brassica napus HOM05D006504 ORTHO05D007867 5.6e-16 88.6 83 62.7
Nitab4.5_0001219g0120 Nicotiana tabacum HOM05D006504 ORTHO05D007867 3.6e-15 85.9 88 56.8
BcaC08g44177 Brassica carinata HOM05D001264 ORTHO05D001167 1.1e-14 84.3 84 63.1
SGA_v2.0_scaffold127G34055 Striga asiatica HOM05D006504 ORTHO05D007867 1.4e-14 84.0 154 58.4
Zm00001eb066180 Zea mays HOM05D006504 ORTHO05D007867 5.2e-14 82.0 101 48.5
vmacro17023 Vaccinium macrocarpon HOM05D006504 ORTHO05D007867 4.4e-13 79.0 51 72.5
DCAR_007625 Daucus carota HOM05D006504 ORTHO05D007867 7.6e-13 78.2 88 52.3
Haze_15959 Corylus avellana HOM05D006504 ORTHO05D007867 2.9e-12 76.3 48 75.0
AL1G43430 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 4.9e-12 75.5 79 53.2
SMO358G0601 Selaginella moellendorffii HOM05D006504 ORTHO05D007867 8.4e-12 74.7 93 47.3
Sp3g12060 Schrenkiella parvula HOM05D006504 ORTHO05D007867 3.2e-11 72.8 84 50.0
Thhalv10022201m.g Eutrema salsugineum HOM05D006504 ORTHO05D007867 1.6e-10 70.5 68 55.9
Pp3c21_4920 Physcomitrium patens HOM05D006504 ORTHO05D007867 1.2e-07 60.8 101 38.6
AT1G29580 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 4.7e-07 58.9 101 38.6
Phvul.010G138400 Phaseolus vulgaris HOM05D006504 ORTHO05D007867 8.1e-07 58.2 101 38.6
Nitab4.5_0002964g0020 Nicotiana tabacum HOM05D006504 ORTHO05D007867 2.4e-06 56.6 128 70.3
SGA_v2.0_scaffold464G52010 Striga asiatica HOM05D006504 ORTHO05D007867 3.1e-06 56.2 49 61.2


User provided reference genes

Program Settings