Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 1.7e-76 289.3 145 100.0
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 5.6e-64 247.7 145 86.2
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 8.1e-55 217.2 148 77.0
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 8.1e-55 217.2 146 76.7
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 7.6e-53 210.7 147 76.9
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 1.3e-52 209.9 147 73.5
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 1.1e-51 206.8 148 72.3
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 1.1e-51 206.8 170 67.6
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 1.1e-51 206.8 149 73.2
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.1e-51 206.8 149 73.2
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 9.2e-51 203.8 149 71.8
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 1.2e-50 203.4 148 72.3
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 4.6e-50 201.4 149 71.8
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 1.0e-49 200.3 149 71.8
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 2.5e-48 195.7 145 69.0
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 1.2e-47 193.4 146 71.2
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 1.6e-47 193.0 145 69.0
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 6.2e-47 191.0 148 68.9
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 1.4e-46 189.9 147 71.4
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 2.4e-46 189.1 146 68.5
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 2.4e-46 189.1 146 68.5
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 5.2e-46 188.0 146 67.8
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 5.2e-46 188.0 145 65.5
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 1.5e-45 186.4 150 72.0
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 2.0e-45 186.0 149 66.4
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 2.6e-45 185.7 145 65.5
CANSAT56G1839 Cannabis sativa HOM05D006233 ORTHO05D007247 2.6e-45 185.7 149 66.4
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 4.4e-45 184.9 147 66.0
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 7.6e-45 184.1 146 67.8
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 9.9e-45 183.7 151 68.2
Sed0001061 Sechium edule HOM05D006233 ORTHO05D007247 1.7e-44 183.0 150 69.3
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 4.9e-44 181.4 150 70.7
Nn6g35511 Nelumbo nucifera HOM05D006233 ORTHO05D007247 6.4e-44 181.0 144 65.3
COL.COLO4_38606 Corchorus olitorius HOM05D006233 ORTHO05D007247 8.4e-44 180.6 145 64.8
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 2.4e-43 179.1 150 67.3
ClCG07G013950 Citrullus lanatus HOM05D006233 ORTHO05D007247 1.2e-42 176.8 142 70.4
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 2.1e-42 176.0 146 65.1
Thhalv10021711m.g Eutrema salsugineum HOM05D006233 ORTHO05D007247 4.6e-42 174.9 148 65.5
AL3G26050 Arabidopsis lyrata HOM05D006233 ORTHO05D007247 3.0e-41 172.2 149 67.1
Lalb_Chr25g0280771 Lupinus albus HOM05D006233 ORTHO05D007247 3.0e-41 172.2 147 65.3
AT3G13882 Arabidopsis thaliana HOM05D006233 ORTHO05D007247 8.7e-41 170.6 149 65.1
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 8.7e-41 170.6 149 67.1
Aa31LG8G1060 Aethionema arabicum HOM05D006233 ORTHO05D007247 1.5e-40 169.9 148 62.8
Carub.0003s1344 Capsella rubella HOM05D006233 ORTHO05D007247 2.5e-40 169.1 149 63.8
BcaC05g29149 Brassica carinata HOM05D006233 ORTHO05D007247 4.3e-40 168.3 148 63.5
C05p53920 Brassica napus HOM05D006233 ORTHO05D007247 4.3e-40 168.3 148 63.5
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 4.3e-40 168.3 160 63.1
PGR119G1625 Punica granatum HOM05D006233 ORTHO05D007247 9.6e-40 167.2 151 62.9
BolC3t16928H Brassica oleracea HOM05D006233 ORTHO05D007247 1.3e-39 166.8 149 63.8
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 1.6e-39 166.4 146 62.3
THA.LOC104822640 Tarenaya hassleriana HOM05D006233 ORTHO05D007247 1.6e-39 166.4 170 57.6
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 2.1e-39 166.0 146 64.4
BcaB04g18809 Brassica carinata HOM05D006233 ORTHO05D007247 2.8e-39 165.6 149 62.4
BcaC01g03969 Brassica carinata HOM05D006233 ORTHO05D007247 3.6e-39 165.2 149 63.1
A03p38490 Brassica napus HOM05D006233 ORTHO05D007247 3.6e-39 165.2 149 63.1
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 3.6e-39 165.2 148 66.2
C03p46650 Brassica napus HOM05D006233 ORTHO05D007247 4.8e-39 164.9 149 63.1
Sp3g12110 Schrenkiella parvula HOM05D006233 ORTHO05D007247 4.8e-39 164.9 149 63.1
BcaB06g25428 Brassica carinata HOM05D006233 ORTHO05D007247 2.4e-38 162.5 149 62.4
Duzib192G0098 Durio zibethinus HOM05D006233 ORTHO05D007247 3.1e-38 162.2 121 65.3
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 3.1e-38 162.2 150 62.7
CARHR088680 Cardamine hirsuta HOM05D006233 ORTHO05D007247 4.0e-38 161.8 150 62.7
BraA03t12999Z Brassica rapa HOM05D006233 ORTHO05D007247 2.0e-37 159.5 153 63.4
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 2.6e-37 159.1 148 63.5
HanXRQChr10g0312401 Helianthus annuus HOM05D006233 ORTHO05D007247 2.6e-37 159.1 152 59.2
BraA03t13001Z Brassica rapa HOM05D006233 ORTHO05D007247 5.8e-37 157.9 150 62.0
Actinidia32155 Actinidia chinensis HOM05D006233 ORTHO05D007247 7.6e-37 157.5 150 63.3
FAN21G3416 Fragaria x ananassa HOM05D006233 ORTHO05D007247 9.9e-37 157.1 127 64.6
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 9.9e-37 157.1 148 62.2
Psat4g187760 Pisum sativum HOM05D006233 ORTHO05D007247 2.2e-36 156.0 139 64.0
MBI04_g36913_MAGBIO Magnolia biondii HOM05D006233 ORTHO05D007247 1.9e-35 152.9 151 59.6
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 7.1e-35 151.0 160 58.8
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 9.3e-35 150.6 147 61.9
VMungo0331G0931 Vigna mungo HOM05D006233 ORTHO05D007247 9.3e-35 150.6 147 59.9
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 1.2e-34 150.2 147 60.5
AUR62038159 Chenopodium quinoa HOM05D006233 ORTHO05D007247 1.6e-34 149.8 161 57.1
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 2.7e-34 149.1 148 54.7
Sopen06g022210 Solanum pennellii HOM05D006233 ORTHO05D007247 2.7e-34 149.1 152 59.9
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 4.6e-34 148.3 154 58.4
AUR62009846 Chenopodium quinoa HOM05D006233 ORTHO05D007247 1.0e-33 147.1 165 53.9
PSO210G5036 Papaver somniferum HOM05D006233 ORTHO05D007247 3.0e-33 145.6 146 54.8
Phvul.010G137600 Phaseolus vulgaris HOM05D006233 ORTHO05D007247 3.0e-33 145.6 147 61.2
PGSC0003DMG400004851 Solanum tuberosum HOM05D006233 ORTHO05D007247 3.0e-33 145.6 152 59.2
Lj5g0016703 Lotus japonicus HOM05D006233 ORTHO05D007247 8.7e-33 144.1 157 54.8
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 8.7e-33 144.1 147 58.5
Solyc06g062760.3 Solanum lycopersicum HOM05D006233 ORTHO05D007247 8.7e-33 144.1 153 59.5
ECA234G2580 Erigeron canadensis HOM05D006233 ORTHO05D007247 1.9e-32 142.9 153 58.8
Glyma.08G191600 Glycine max HOM05D006233 ORTHO05D007247 1.9e-32 142.9 142 59.9
arahy.Tifrunner.gnm1.ann1.9P6A99 Arachis hypogaea HOM05D006233 ORTHO05D007247 7.4e-32 141.0 122 60.7
CDE03G0127 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 2.8e-31 139.0 147 56.5
Glyma.07G008600 Glycine max HOM05D006233 ORTHO05D007247 3.7e-31 138.7 141 56.7
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 3.7e-31 138.7 152 59.2
EL10Ac7g16362 Beta vulgaris HOM05D006233 ORTHO05D007247 3.1e-30 135.6 161 50.9
BolC5t34058H Brassica oleracea HOM05D006233 ORTHO05D007247 4.0e-30 135.2 157 51.6
Lj5A42T58 Lonicera japonica HOM05D006233 ORTHO05D007247 2.0e-29 132.9 139 58.3
Rhsim08G0234900 Rhododendron simsii HOM05D006233 ORTHO05D007247 1.3e-28 130.2 131 54.2
FAN11G2894 Fragaria x ananassa HOM05D000283 ORTHO05D007247 1.7e-28 129.8 133 56.4
Hund20828 Selenicereus undatus HOM05D006233 ORTHO05D007247 3.8e-28 128.6 170 49.4
HanXRQChr04g0094941 Helianthus annuus HOM05D006233 ORTHO05D007247 4.9e-28 128.3 146 59.6
Nn8g38812 Nelumbo nucifera HOM05D006233 ORTHO05D007247 1.4e-27 126.7 124 54.0
Lsat_1_v5_gn_5_135041 Lactuca sativa HOM05D006233 ORTHO05D007247 8.7e-25 117.5 124 54.0
A03p38520 Brassica napus HOM05D006233 ORTHO05D007247 1.1e-24 117.1 125 56.0
QL05p010144 Quercus lobata HOM05D006233 ORTHO05D007247 9.6e-24 114.0 93 62.4
QL05p010226 Quercus lobata HOM05D006233 ORTHO05D007247 1.6e-23 113.2 94 62.8
RcHm_v2.0_Chr5g0063721 Rosa chinensis HOM05D006233 ORTHO05D007247 1.6e-23 113.2 90 62.2
Os01g0571200 Oryza sativa ssp. japonica HOM05D006233 ORTHO05D007247 6.2e-23 111.3 146 46.6
Zm00001eb160070 Zea mays HOM05D006233 ORTHO05D007247 1.7e-20 103.2 148 44.6
BraA05t22362Z Brassica rapa HOM05D006233 ORTHO05D007247 6.5e-20 101.3 173 42.8
SGA_v2.0_scaffold68G22913 Striga asiatica HOM05D006233 ORTHO05D007247 3.2e-19 99.0 130 51.5
CSS0050466 Camellia sinensis var. sinensis HOM05D006233 ORTHO05D007247 9.3e-19 97.4 103 54.4
ATR0789G010 Amborella trichopoda HOM05D006233 ORTHO05D007247 2.1e-18 96.3 73 65.8
BcaC05g29150 Brassica carinata HOM05D006233 ORTHO05D007247 7.9e-18 94.4 148 49.3
CDE06G1672 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 5.1e-17 91.7 115 48.7
Sed0004594 Sechium edule HOM05D006233 ORTHO05D007247 2.5e-16 89.4 92 56.5
unitig_8.g4463 Utricularia gibba HOM05D006233 ORTHO05D007247 4.8e-15 85.1 129 45.0
vmacro18776 Vaccinium macrocarpon HOM05D006233 ORTHO05D007247 3.1e-14 82.4 94 50.0
HPP92_007656 Vanilla planifolia HOM05D006233 ORTHO05D007247 6.9e-14 81.3 124 43.5
A05p35530 Brassica napus HOM05D006233 ORTHO05D007247 4.5e-13 78.6 96 47.9
Pp3c4_29560 Physcomitrium patens HOM05D006233 ORTHO05D007247 1.9e-11 73.2 73 52.1
Zm00001eb357240 Zea mays HOM05D006233 ORTHO05D007247 1.2e-10 70.5 127 37.8
AagrBONN_evm.TU.Sc2ySwM_368.223 Anthoceros agrestis HOM05D003143 ORTHO05D003628 1.4e-09 67.0 52 61.5
Nn1g01194 Nelumbo nucifera HOM05D006233 ORTHO05D007247 1.8e-09 66.6 50 70.0
FAN25G2302 Fragaria x ananassa HOM05D000283 ORTHO05D000358 1.1e-08 63.9 80 48.8
Oeu011882.1 Olea europaea HOM05D006233 ORTHO05D007247 1.1e-08 63.9 96 45.8
Mapoly0016s0011 Marchantia polymorpha HOM05D006233 ORTHO05D007247 1.5e-08 63.5 58 55.2
CBR_g8600 Chara braunii HOM05D006233 ORTHO05D007247 4.3e-08 62.0 71 47.9
Ca_29232_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 4.3e-08 62.0 42 71.4
CSS0050070 Camellia sinensis var. sinensis HOM05D041584 ORTHO05D007247 1.7e-07 60.1 40 70.0
Sc15g0000290 Simmondsia chinensis HOM05D006233 ORTHO05D007247 1.8e-06 56.6 125 33.6
MCO16G417 Micromonas commoda HOM05D003208 ORTHO05D004103 4.1e-06 55.5 48 58.3
SalBow7G1471 Salvia bowleyana HOM05D006233 ORTHO05D007247 4.1e-06 55.5 101 39.6


User provided reference genes

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