Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 4.3e-281 970.7 504 100.0
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 7.8e-198 694.1 508 72.8
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 1.5e-148 530.4 433 63.0
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 1.6e-145 520.4 446 61.4
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 1.7e-131 473.8 425 59.5
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 5.4e-130 468.8 425 59.5
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 1.3e-123 447.6 427 56.4
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 1.3e-120 437.6 427 56.4
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 3.8e-120 436.0 433 55.2
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 1.2e-118 431.0 422 55.7
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 3.6e-118 429.5 422 55.2
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 3.0e-117 426.4 423 55.3
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 5.2e-117 425.6 444 52.9
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 1.2e-116 424.5 427 54.8
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 1.5e-116 424.1 427 54.3
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 3.4e-116 422.9 495 49.7
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 1.7e-115 420.6 435 52.4
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 4.9e-115 419.1 456 50.7
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 1.1e-114 417.9 424 52.8
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 1.8e-114 417.2 430 52.1
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 1.6e-113 414.1 472 50.6
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 1.7e-112 410.6 420 52.1
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 8.6e-112 408.3 423 53.2
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 1.2e-110 404.4 454 47.8
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 2.8e-110 403.3 438 50.7
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 4.7e-110 402.5 432 50.7
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 1.8e-109 400.6 427 51.1
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 1.8e-109 400.6 426 52.3
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 3.1e-109 399.8 429 50.6
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 8.9e-109 398.3 428 51.2
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 3.4e-108 396.4 424 51.7
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 3.4e-108 396.4 427 51.8
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 7.5e-108 395.2 346 57.8
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 2.2e-107 393.7 453 49.2
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 3.7e-107 392.9 453 49.4
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 8.3e-107 391.7 380 54.7
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 1.4e-106 391.0 434 50.5
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.9e-106 390.6 430 48.6
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 3.2e-106 389.8 434 50.0
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 1.2e-105 387.9 446 49.1
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 1.6e-105 387.5 423 51.8
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.5e-105 386.3 430 48.4
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 6.0e-105 385.6 430 48.4
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 6.0e-105 385.6 425 50.8
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 1.0e-104 384.8 425 50.8
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 1.7e-104 384.0 413 52.1
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 5.0e-104 382.5 448 48.2
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 6.6e-104 382.1 430 48.6
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 8.6e-104 381.7 425 50.4
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 2.5e-103 380.2 345 57.1
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 9.5e-103 378.3 425 49.4
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 1.2e-102 377.9 429 49.2
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 1.2e-102 377.9 425 49.4
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 2.8e-102 376.7 502 43.0
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 4.7e-102 375.9 429 47.1
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 4.7e-102 375.9 484 46.3
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 2.6e-100 370.2 433 47.1
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 4.4e-100 369.4 427 49.4
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 9.9e-100 368.2 433 47.8
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 1.3e-99 367.9 417 48.9
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.7e-99 367.5 466 44.6
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.7e-99 367.5 420 48.1
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.7e-99 367.5 428 47.0
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 2.2e-99 367.1 433 47.8
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 1.1e-98 364.8 434 46.8
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 2.4e-98 363.6 424 48.1
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.2e-97 361.3 425 49.4
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 1.0e-96 358.2 427 46.6
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 1.7e-96 357.5 436 48.2
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 3.0e-96 356.7 424 46.5
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 5.1e-96 355.9 425 45.2
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 6.6e-96 355.5 423 47.8
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 8.6e-96 355.1 427 46.4
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 8.6e-96 355.1 427 46.4
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 8.6e-96 355.1 427 46.4
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 5.6e-95 352.4 427 45.7
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 1.6e-94 350.9 454 43.8
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 4.7e-94 349.4 416 49.0
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 6.2e-94 349.0 440 45.0
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 1.1e-93 348.2 435 44.1
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 1.1e-93 348.2 434 46.8
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 2.4e-93 347.1 630 36.8
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 6.8e-93 345.5 316 56.0
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 1.2e-92 344.7 430 45.1
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 2.6e-92 343.6 426 45.1
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 3.4e-92 343.2 516 41.9
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 4.4e-92 342.8 428 45.3
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 5.8e-92 342.4 434 44.7
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 1.3e-91 341.3 429 45.7
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 1.4e-90 337.8 438 44.5
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 2.4e-90 337.0 417 45.8
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 1.2e-89 334.7 425 46.4
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.6e-89 334.3 378 47.9
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 1.0e-88 331.6 425 45.9
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 1.3e-88 331.3 423 44.7
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 4.3e-87 326.2 435 42.8
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 2.6e-84 317.0 439 43.5
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 5.8e-84 315.8 436 43.3
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 9.9e-84 315.1 428 43.5
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 1.1e-82 311.6 436 42.7
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 3.5e-81 306.6 449 41.4
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 4.8e-78 296.2 441 37.9
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 2.4e-77 293.9 456 39.0
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.1e-77 293.5 416 42.5
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 3.1e-77 293.5 338 47.9
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 4.0e-77 293.1 452 37.6
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 9.0e-77 292.0 452 37.2
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 1.5e-76 291.2 438 40.2
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 4.2e-74 283.1 454 40.1
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 2.1e-73 280.8 467 35.5
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 1.1e-71 275.0 300 51.7
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 9.6e-71 271.9 423 41.6
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 4.0e-69 266.5 245 55.9
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 2.2e-67 260.8 431 39.4
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 6.7e-64 249.2 469 35.2
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 1.8e-61 241.1 437 39.1
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 1.4e-58 231.5 392 37.2
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 1.4e-58 231.5 218 51.8
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 1.5e-52 211.5 424 36.3
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 2.6e-52 210.7 314 40.8
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 7.4e-47 192.6 230 44.8
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 4.8e-46 189.9 451 34.4
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 1.4e-45 188.3 237 45.1
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 2.0e-44 184.5 310 38.7
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 4.5e-44 183.3 458 31.2
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.3e-43 181.8 401 34.2
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 2.5e-42 177.6 472 29.2
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 2.7e-41 174.1 283 38.5
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 4.7e-41 173.3 237 41.4
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 6.7e-40 169.5 317 35.0
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 6.9e-37 159.5 247 40.9
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 3.4e-36 157.1 312 33.3
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 2.7e-33 147.5 140 57.1
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 1.7e-30 138.3 184 46.7
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 2.0e-28 131.3 110 58.2
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 3.5e-28 130.6 444 28.4
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 8.5e-27 125.9 445 27.9
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.9e-26 124.8 427 27.4
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 2.7e-25 120.9 328 27.4
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 1.0e-24 119.0 446 27.1
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 4.4e-23 113.6 108 55.6
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 2.8e-22 110.9 154 40.9
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 6.3e-22 109.8 147 46.9
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 2.0e-20 104.8 165 36.4
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 3.8e-19 100.5 133 45.9
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 9.4e-18 95.9 163 35.6
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 8.0e-17 92.8 184 34.2
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 3.7e-14 84.0 98 41.8
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 1.7e-11 75.1 115 38.3
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 1.7e-11 75.1 115 38.3
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 2.9e-11 74.3 130 37.7
SEGI_36774 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 5.5e-10 70.1 134 32.8
Cre01.g070567 Chlamydomonas reinhardtii HOM05D004436 ORTHO05D005179 2.3e-08 64.7 178 28.7
SMO144G0124 Selaginella moellendorffii HOM05D004436 ORTHO05D005179 5.2e-08 63.5 120 34.2
Ca_02098_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 2.0e-07 61.6 174 29.3
Oeu027301.1 Olea europaea HOM05D004436 ORTHO05D005179 3.7e-06 57.4 153 28.8
AagrBONN_evm.TU.Sc2ySwM_228.4794 Anthoceros agrestis HOM05D004436 ORTHO05D005179 6.3e-06 56.6 80 43.8


User provided reference genes

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