Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G021300 Manihot esculenta HOM05D006979 ORTHO05D008857 8.7e-168 593.6 303 100.0
Potri.003G063800 Populus trichocarpa HOM05D006979 ORTHO05D008857 6.1e-129 464.5 302 78.5
Sabra03G0037400 Salix brachista HOM05D006979 ORTHO05D008857 4.5e-124 448.4 308 74.4
Duzib235G1224 Durio zibethinus HOM05D006979 ORTHO05D008857 1.3e-115 420.2 301 72.1
Thecc.06G118900 Theobroma cacao HOM05D006979 ORTHO05D008857 1.1e-114 417.2 296 71.6
Atru.chr1.3953 Acer truncatum HOM05D006979 ORTHO05D008857 1.5e-114 416.8 308 70.1
Gorai.009G146700 Gossypium raimondii HOM05D006979 ORTHO05D008857 1.5e-114 416.8 305 70.5
Gohir.D05G142800 Gossypium hirsutum HOM05D006979 ORTHO05D008857 2.5e-114 416.0 305 70.5
COL.COLO4_30769 Corchorus olitorius HOM05D006979 ORTHO05D008857 2.1e-113 412.9 306 72.5
Ciclev10026147m.g Citrus clementina HOM05D006979 ORTHO05D008857 2.7e-113 412.5 300 70.3
Prupe.3G042700 Prunus persica HOM05D006979 ORTHO05D008857 4.7e-113 411.8 304 70.1
TWI31G0112 Tripterygium wilfordii HOM05D006979 ORTHO05D008857 1.8e-112 409.8 308 70.5
FvH4_6g34590 Fragaria vesca HOM05D006979 ORTHO05D008857 8.8e-112 407.5 303 69.3
FAN09G4734 Fragaria x ananassa HOM05D006979 ORTHO05D008857 2.6e-111 406.0 303 69.3
MD09G1184500 Malus domestica HOM05D006979 ORTHO05D008857 3.3e-111 405.6 305 68.9
Cpa.g.sc25.110 Carica papaya HOM05D006979 ORTHO05D008857 5.7e-111 404.8 301 72.1
RcHm_v2.0_Chr2g0145111 Rosa chinensis HOM05D006979 ORTHO05D008857 9.7e-111 404.1 304 69.4
Cfa003539 Carpinus fangiana HOM05D006979 ORTHO05D008857 1.3e-110 403.7 299 69.6
TAR383G0452 Trochodendron aralioides HOM05D006979 ORTHO05D008857 4.1e-109 398.7 302 68.9
CSS0018635 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 8.5e-107 391.0 299 68.6
Rhsim08G0237900 Rhododendron simsii HOM05D006979 ORTHO05D008857 8.5e-107 391.0 293 66.9
CANSAT56G2284 Cannabis sativa HOM05D006979 ORTHO05D008857 1.1e-106 390.6 306 67.6
Nitab4.5_0000189g0250 Nicotiana tabacum HOM05D006979 ORTHO05D008857 1.1e-106 390.6 293 67.9
AUR62001490 Chenopodium quinoa HOM05D006979 ORTHO05D008857 1.5e-106 390.2 299 66.9
GSVIVG01016774001 Vitis vinifera HOM05D006979 ORTHO05D008857 1.9e-106 389.8 290 67.9
Lj3g0022239 Lotus japonicus HOM05D006979 ORTHO05D008857 4.2e-106 388.7 300 67.3
Glyma.16G005300 Glycine max HOM05D006979 ORTHO05D008857 7.2e-106 387.9 304 65.8
CSS0026622 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 1.6e-105 386.7 301 68.1
Nitab4.5_0001199g0130 Nicotiana tabacum HOM05D006979 ORTHO05D008857 2.1e-105 386.3 275 69.8
AUR62009880 Chenopodium quinoa HOM05D006979 ORTHO05D008857 1.0e-104 384.0 300 67.0
Glyma.07G036000 Glycine max HOM05D006979 ORTHO05D008857 1.4e-104 383.6 304 65.5
Lalb_Chr04g0263421 Lupinus albus HOM05D006979 ORTHO05D008857 6.8e-104 381.3 297 67.0
CiPaw.01G219600 Carya illinoinensis HOM05D006979 ORTHO05D008857 8.8e-104 380.9 250 75.6
CAN.G1368.7 Capsicum annuum HOM05D006979 ORTHO05D008857 2.0e-103 379.8 276 69.9
TPR.G16442 Trifolium pratense HOM05D006979 ORTHO05D008857 4.4e-103 378.6 306 64.1
Eucgr.F03173 Eucalyptus grandis HOM05D006979 ORTHO05D008857 5.7e-103 378.3 283 68.9
Actinidia32181 Actinidia chinensis HOM05D006979 ORTHO05D008857 7.5e-103 377.9 289 68.5
Sed0019772 Sechium edule HOM05D006979 ORTHO05D008857 9.8e-103 377.5 279 67.7
vmacro15023 Vaccinium macrocarpon HOM05D006979 ORTHO05D008857 9.8e-103 377.5 289 66.4
ECA234G1570 Erigeron canadensis HOM05D006979 ORTHO05D008857 1.3e-102 377.1 272 68.8
QL05p008051 Quercus lobata HOM05D006979 ORTHO05D008857 1.3e-102 377.1 350 59.1
Dinv04035 Davidia involucrata HOM05D006979 ORTHO05D008857 6.3e-102 374.8 278 70.5
Phvul.010G133500 Phaseolus vulgaris HOM05D006979 ORTHO05D008857 1.1e-101 374.0 304 63.5
PGSC0003DMG400011606 Solanum tuberosum HOM05D006979 ORTHO05D008857 2.4e-101 372.9 296 65.2
Medtr8g019510 Medicago truncatula HOM05D006979 ORTHO05D008857 2.0e-100 369.8 264 69.3
Oeu015481.1 Olea europaea HOM05D006979 ORTHO05D008857 2.7e-100 369.4 303 64.4
Sopen12g023760 Solanum pennellii HOM05D006979 ORTHO05D008857 7.7e-100 367.9 294 65.3
Migut.D00941 Erythranthe guttata HOM05D006979 ORTHO05D008857 1.0e-99 367.5 255 72.9
FAN05G0457 Fragaria x ananassa HOM05D006979 ORTHO05D008857 1.3e-99 367.1 281 68.3
CsaV3_7G034520 Cucumis sativus L. HOM05D006979 ORTHO05D008857 2.3e-99 366.3 279 66.7
SGA_v2.0_scaffold4G02061 Striga asiatica HOM05D006979 ORTHO05D008857 5.0e-99 365.2 297 65.7
Lsat_1_v5_gn_5_135940 Lactuca sativa HOM05D006979 ORTHO05D008857 1.9e-98 363.2 257 69.6
Hund05741 Selenicereus undatus HOM05D006979 ORTHO05D008857 1.9e-98 363.2 315 61.3
Atru.chr1.3954 Acer truncatum HOM05D006979 ORTHO05D008857 4.2e-98 362.1 246 72.8
SalBow7G2243 Salvia bowleyana HOM05D006979 ORTHO05D008857 1.6e-97 360.1 258 71.3
VMungo0331G0985 Vigna mungo HOM05D006979 ORTHO05D008857 1.6e-97 360.1 313 60.4
Lj9A522T69 Lonicera japonica HOM05D006979 ORTHO05D008857 4.7e-97 358.6 248 72.6
Gohir.A05G140600 Gossypium hirsutum HOM05D006979 ORTHO05D008857 1.8e-96 356.7 305 63.6
Aqoxy5G02291 Aquilegia oxysepala HOM05D006979 ORTHO05D008857 5.2e-96 355.1 265 66.8
BcaNung07150 Brassica carinata HOM05D006979 ORTHO05D008857 6.8e-96 354.8 308 62.0
THA.LOC104813956 Tarenaya hassleriana HOM05D006979 ORTHO05D008857 2.6e-95 352.8 305 62.3
Solyc12g049280.3 Solanum lycopersicum HOM05D006979 ORTHO05D008857 3.4e-95 352.4 247 70.9
Peaxi162Scf00177g00513 Petunia axillaris HOM05D006979 ORTHO05D008857 7.5e-95 351.3 264 67.0
Carub.0002s1948 Capsella rubella HOM05D006979 ORTHO05D008857 3.1e-93 345.9 306 59.5
Haze_16022 Corylus avellana HOM05D006979 ORTHO05D008857 2.7e-92 342.8 300 62.7
PGR119G0938 Punica granatum HOM05D006979 ORTHO05D008857 2.7e-92 342.8 300 62.7
ClCG09G000940 Citrullus lanatus HOM05D006979 ORTHO05D008857 3.5e-92 342.4 322 56.2
CDE05G0714 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 1.3e-91 340.5 252 65.9
AL2G32310 Arabidopsis lyrata HOM05D006979 ORTHO05D008857 2.9e-91 339.3 303 59.7
Sc08g0005680 Simmondsia chinensis HOM05D006979 ORTHO05D008857 2.9e-91 339.3 265 64.9
C06p46960 Brassica napus HOM05D006979 ORTHO05D008857 8.6e-91 337.8 306 58.8
BolC6t39737H Brassica oleracea HOM05D006979 ORTHO05D008857 8.6e-91 337.8 306 58.8
Cc04_g01400 Coffea canephora HOM05D006979 ORTHO05D008857 8.6e-91 337.8 241 71.4
Sp5g27700 Schrenkiella parvula HOM05D006979 ORTHO05D008857 4.3e-90 335.5 305 58.0
BcaC08g46707 Brassica carinata HOM05D006979 ORTHO05D008857 9.5e-90 334.3 306 58.8
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 6.1e-89 331.6 257 66.1
MBI19_g11849_MAGBIO Magnolia biondii HOM05D006979 ORTHO05D008857 1.4e-88 330.5 264 64.4
Os03g0410700 Oryza sativa ssp. japonica HOM05D006979 ORTHO05D008857 6.8e-88 328.2 257 64.6
A07p38800 Brassica napus HOM05D006979 ORTHO05D008857 1.5e-87 327.0 328 55.2
BraA07t31434Z Brassica rapa HOM05D006979 ORTHO05D008857 1.5e-87 327.0 328 55.2
Aa31LG4G3010 Aethionema arabicum HOM05D006979 ORTHO05D008857 9.8e-87 324.3 306 58.5
PSO210G4684 Papaver somniferum HOM05D006979 ORTHO05D008857 9.8e-87 324.3 269 62.1
Thhalv10018914m.g Eutrema salsugineum HOM05D006979 ORTHO05D008857 1.3e-86 323.9 283 59.4
ATR0598G212 Amborella trichopoda HOM05D006979 ORTHO05D008857 2.9e-86 322.8 263 62.4
arahy.Tifrunner.gnm1.ann1.4E7AR5 Arachis hypogaea HOM05D006979 ORTHO05D008857 9.2e-85 317.8 303 57.1
arahy.Tifrunner.gnm1.ann1.IV001U Arachis hypogaea HOM05D006979 ORTHO05D008857 5.9e-84 315.1 303 56.8
PSO210G5065 Papaver somniferum HOM05D006979 ORTHO05D008857 1.7e-83 313.5 265 61.9
Ca_05018_v3 Cicer arietinum L. HOM05D006979 ORTHO05D008857 9.2e-77 291.2 196 73.0
Nn6g35601 Nelumbo nucifera HOM05D006979 ORTHO05D008857 9.2e-77 291.2 302 53.6
AT1G72640 Arabidopsis thaliana HOM05D006979 ORTHO05D008857 7.3e-74 281.6 248 60.5
Psat4g183680 Pisum sativum HOM05D006979 ORTHO05D008857 2.1e-73 280.0 215 65.6
Zm00001eb019720 Zea mays HOM05D006979 ORTHO05D008857 3.0e-67 259.6 243 57.2
Pp3c11_2100 Physcomitrium patens HOM05D006979 ORTHO05D008857 3.3e-66 256.1 259 52.5
EL10Ac7g16405 Beta vulgaris HOM05D006979 ORTHO05D008857 5.6e-66 255.4 315 48.3
Hma1.2p1_0496F.1_g166210 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 1.3e-62 244.2 170 71.2
CARHR065560 Cardamine hirsuta HOM05D006979 ORTHO05D008857 4.9e-62 242.3 190 63.7
FAN14G3231 Fragaria x ananassa HOM05D006979 ORTHO05D008857 4.1e-61 239.2 161 71.4
Hma1.2p1_0496F.1_g166200 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 9.0e-56 221.5 209 58.9
MELO3C024358.2 Cucumis melo HOM05D006979 ORTHO05D008857 1.1e-53 214.5 165 66.7
AagrBONN_evm.TU.Sc2ySwM_362.1497 Anthoceros agrestis HOM05D006979 ORTHO05D008857 2.4e-53 213.4 202 54.0
SMO117G0249 Selaginella moellendorffii HOM05D006979 ORTHO05D008857 5.1e-51 205.7 252 43.7
Ah.08g216750 Amaranthus hybridus HOM05D006979 ORTHO05D008857 9.0e-40 168.3 146 63.7
SEGI_25115 Sequoiadendron giganteum HOM05D006979 ORTHO05D008857 4.5e-39 166.0 137 57.7
Mapoly0030s0153 Marchantia polymorpha HOM05D006979 ORTHO05D008857 1.1e-29 134.8 146 50.0
CDE05G2075 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 1.8e-19 100.9 189 36.0
Cre02.g095133 Chlamydomonas reinhardtii HOM05D006979 ORTHO05D008857 5.1e-19 99.4 248 32.7
Medtr8g019490 Medicago truncatula HOM05D006979 ORTHO05D008857 1.7e-17 94.4 102 48.0
MCO12G160 Micromonas commoda HOM05D006979 ORTHO05D008857 8.2e-17 92.0 258 31.0
RcHm_v2.0_Chr6g0307231 Rosa chinensis HOM05D006979 ORTHO05D008857 5.0e-14 82.8 56 71.4
RcHm_v2.0_Chr3g0497381 Rosa chinensis HOM05D006979 ORTHO05D008857 3.2e-13 80.1 56 71.4
PRCOL_00001479 Prasinoderma coloniale HOM05D006979 ORTHO05D008857 3.9e-11 73.2 211 27.5
Mapoly0030s0154 Marchantia polymorpha HOM05D006979 ORTHO05D008857 5.0e-06 56.2 54 42.6
PSO063G2886 Papaver somniferum HOM05D003730 ORTHO05D004458 8.5e-06 55.5 95 35.8
Hund21967 Selenicereus undatus HOM05D006655 ORTHO05D007986 8.5e-06 55.5 269 25.3


User provided reference genes

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