Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 6.1e-106 387.5 197 100.0
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 4.4e-96 354.8 197 91.4
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 6.8e-81 304.3 197 77.2
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 5.8e-80 301.2 197 76.1
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 1.3e-79 300.1 200 76.0
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 1.7e-79 299.7 198 74.7
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 3.7e-79 298.5 196 77.6
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 6.4e-79 297.7 198 74.7
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 2.4e-78 295.8 195 75.9
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 2.4e-78 295.8 197 75.6
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 2.1e-77 292.7 197 74.1
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 3.5e-77 292.0 201 73.1
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 3.5e-77 292.0 192 77.6
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 4.6e-77 291.6 198 74.2
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 7.8e-77 290.8 197 72.1
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 2.3e-76 289.3 197 73.1
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 3.0e-76 288.9 200 74.0
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 3.0e-76 288.9 200 73.0
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 3.9e-76 288.5 198 73.2
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 5.1e-76 288.1 197 75.6
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 5.1e-76 288.1 198 73.2
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 8.6e-76 287.3 199 73.4
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 1.5e-75 286.6 216 70.4
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 1.9e-75 286.2 194 73.7
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 1.9e-75 286.2 197 75.6
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 3.3e-75 285.4 207 70.5
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 7.3e-75 284.3 199 73.4
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 9.6e-75 283.9 195 71.8
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 1.6e-74 283.1 199 71.4
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 2.1e-74 282.7 208 67.8
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 2.8e-74 282.3 197 71.6
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 4.7e-74 281.6 204 70.6
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 4.7e-74 281.6 195 71.3
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 6.2e-74 281.2 204 71.1
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 6.2e-74 281.2 197 71.6
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 6.2e-74 281.2 197 71.6
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 1.1e-73 280.4 198 72.2
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 1.1e-73 280.4 216 69.9
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 1.8e-73 279.6 198 70.7
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 3.1e-73 278.9 198 70.7
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 3.1e-73 278.9 199 71.4
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 4.0e-73 278.5 200 72.0
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 4.0e-73 278.5 197 72.1
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 6.8e-73 277.7 197 71.1
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 1.2e-72 276.9 197 71.6
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 1.5e-72 276.6 204 69.6
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.0e-72 276.2 196 71.4
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 2.6e-72 275.8 191 73.3
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 4.4e-72 275.0 198 70.2
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 4.4e-72 275.0 199 70.4
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 2.2e-71 272.7 198 68.7
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 2.2e-71 272.7 200 70.5
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 3.8e-71 271.9 198 70.2
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 4.9e-71 271.6 191 72.3
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.1e-70 270.4 198 68.2
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 1.9e-70 269.6 206 68.0
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 5.4e-70 268.1 198 67.7
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 7.1e-70 267.7 200 67.0
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 7.1e-70 267.7 198 68.7
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 1.2e-69 266.9 189 69.8
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.1e-69 266.2 196 68.9
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 3.5e-69 265.4 198 68.7
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 3.5e-69 265.4 197 68.0
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 4.6e-69 265.0 195 68.7
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 6.0e-69 264.6 206 67.0
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 1.0e-68 263.8 206 67.0
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 1.0e-68 263.8 197 69.0
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 5.1e-68 261.5 198 67.7
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 6.6e-68 261.2 199 65.3
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 1.5e-67 260.0 198 67.2
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 1.5e-67 260.0 197 67.0
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 5.6e-67 258.1 199 66.8
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 1.3e-66 256.9 193 68.9
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 1.4e-65 253.4 184 66.8
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 1.5e-64 250.0 195 66.7
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 2.0e-64 249.6 192 63.5
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 7.6e-64 247.7 176 68.2
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 9.9e-64 247.3 198 64.1
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 2.9e-63 245.7 211 60.2
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 1.1e-62 243.8 211 60.7
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 1.4e-62 243.4 195 66.2
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 4.2e-62 241.9 176 68.2
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 7.8e-61 237.7 155 76.8
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 6.6e-60 234.6 193 62.7
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 8.7e-60 234.2 188 63.3
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 1.1e-59 233.8 197 61.9
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 5.6e-59 231.5 199 61.8
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 7.3e-59 231.1 199 60.8
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 2.1e-58 229.6 197 59.4
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 6.2e-58 228.0 152 72.4
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 1.1e-57 227.3 190 61.1
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 1.4e-57 226.9 197 61.4
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 2.4e-57 226.1 188 63.3
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 2.4e-57 226.1 199 60.3
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 3.1e-57 225.7 192 57.3
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 4.0e-57 225.3 198 60.6
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 6.9e-57 224.6 299 46.8
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 9.0e-57 224.2 188 62.8
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 1.2e-56 223.8 194 61.9
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 1.2e-56 223.8 198 60.6
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 1.2e-56 223.8 198 60.6
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 1.2e-56 223.8 197 57.9
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 4.5e-56 221.9 200 59.5
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 4.5e-56 221.9 195 60.5
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 5.8e-56 221.5 199 58.3
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 7.6e-56 221.1 192 58.3
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 3.8e-55 218.8 261 49.4
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 4.9e-55 218.4 197 57.4
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 6.4e-55 218.0 197 57.4
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 8.4e-55 217.6 198 59.6
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 1.1e-54 217.2 197 57.4
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 1.9e-54 216.5 197 56.9
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 3.2e-54 215.7 197 59.9
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 7.1e-54 214.5 199 57.8
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 6.0e-53 211.5 197 58.9
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 7.9e-53 211.1 196 56.1
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 3.7e-50 202.2 160 64.4
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 4.0e-49 198.7 194 55.7
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 4.0e-49 198.7 195 56.9
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.5e-48 196.8 181 56.9
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 2.9e-47 192.6 197 54.8
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 5.7e-43 178.3 176 52.3
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 2.1e-42 176.4 166 56.6
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 2.1e-42 176.4 172 58.1
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 4.8e-42 175.3 126 65.1
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 4.8e-42 175.3 191 53.9
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 1.1e-41 174.1 185 51.9
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 5.8e-40 168.3 186 52.2
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 2.5e-38 162.9 100 81.0
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 2.7e-37 159.5 98 80.6
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 8.2e-34 147.9 185 49.2
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 3.1e-33 146.0 138 47.8
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 1.2e-29 134.0 101 60.4
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 1.8e-28 130.2 117 56.4
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 6.3e-26 121.7 101 61.4
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 8.2e-26 121.3 135 52.6
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 8.2e-26 121.3 152 46.1
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 1.4e-25 120.6 126 50.0
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 2.4e-25 119.8 99 61.6
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 5.3e-25 118.6 123 46.3
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 6.9e-25 118.2 117 58.1
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.2e-24 117.5 96 62.5
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 7.7e-24 114.8 116 53.4
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 1.0e-23 114.4 104 63.5
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 1.3e-23 114.0 116 52.6
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 2.2e-23 113.2 97 62.9
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 2.5e-22 109.8 107 52.3
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 8.2e-18 94.7 123 43.1
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 1.0e-15 87.8 123 41.5
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 2.5e-14 83.2 189 30.7
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 4.7e-13 79.0 65 58.5
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 6.7e-12 75.1 82 56.1
QL04p080373 Quercus lobata HOM05D000023 ORTHO05D000014 3.3e-11 72.8 45 73.3
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 9.7e-11 71.2 65 55.4
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 6.3e-10 68.6 101 43.6
QL12p004065 Quercus lobata HOM05D004696 ORTHO05D005645 6.3e-10 68.6 66 59.1
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 8.2e-10 68.2 57 64.9
Medtr7g074130 Medicago truncatula HOM05D004696 ORTHO05D005645 2.9e-07 59.7 62 51.6


User provided reference genes

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