Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G019400 Manihot esculenta HOM05D005576 ORTHO05D007010 0.0e+00 1934.5 993 100.0
Dinv20428 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1586.6 972 82.4
Potri.003G066200 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1580.5 998 80.1
Prupe.3G039600 Prunus persica HOM05D005576 ORTHO05D007010 0.0e+00 1579.7 993 80.9
TAR626G1694 Trochodendron aralioides HOM05D005576 ORTHO05D007010 0.0e+00 1565.4 993 78.8
Potri.001G168100 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1565.1 996 79.6
Actinidia26024 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1563.5 993 78.4
Haze_16039 Corylus avellana HOM05D005576 ORTHO05D007010 0.0e+00 1560.0 993 79.1
COL.COLO4_30746 Corchorus olitorius HOM05D005576 ORTHO05D007010 0.0e+00 1558.1 993 80.0
Thecc.06G121300 Theobroma cacao HOM05D005576 ORTHO05D007010 0.0e+00 1557.7 993 80.2
Atru.chr1.3999 Acer truncatum HOM05D005576 ORTHO05D007010 0.0e+00 1555.8 993 79.2
RcHm_v2.0_Chr2g0145781 Rosa chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1546.9 993 78.2
Sabra03G0038700 Salix brachista HOM05D005576 ORTHO05D007010 0.0e+00 1545.4 966 81.1
Sopen03g041140 Solanum pennellii HOM05D005576 ORTHO05D007010 0.0e+00 1545.4 994 77.1
PGSC0003DMG400022883 Solanum tuberosum HOM05D005576 ORTHO05D007010 0.0e+00 1545.4 994 76.9
Nitab4.5_0004422g0040 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1544.3 982 77.6
Nitab4.5_0002898g0010 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1540.8 982 77.1
CAN.G668.41 Capsicum annuum HOM05D005576 ORTHO05D007010 0.0e+00 1540.4 993 76.3
FvH4_6g34890 Fragaria vesca HOM05D005576 ORTHO05D007010 0.0e+00 1532.3 993 77.1
GSVIVG01016742001 Vitis vinifera HOM05D005576 ORTHO05D007010 0.0e+00 1532.3 996 78.3
MD09G1181500 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1531.5 993 77.9
Duzib235G0347 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1531.2 993 77.9
QL05p004145 Quercus lobata HOM05D005576 ORTHO05D007010 0.0e+00 1530.0 993 78.1
FAN09G4405 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1528.8 993 77.1
vmacro22036 Vaccinium macrocarpon HOM05D005576 ORTHO05D007010 0.0e+00 1528.1 995 78.1
Dinv37863 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1525.0 1018 76.6
TWI31G0259 Tripterygium wilfordii HOM05D005576 ORTHO05D007010 0.0e+00 1524.2 993 76.4
MD17G1167700 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1523.1 993 77.5
Nn8g38631 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1521.1 993 76.7
Lsat_1_v5_gn_4_93500 Lactuca sativa HOM05D005576 ORTHO05D007010 0.0e+00 1518.8 990 76.2
CiPaw.01G218000 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1513.8 993 76.8
THA.LOC104808055 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1510.0 993 75.9
HanXRQChr09g0276901 Helianthus annuus HOM05D005576 ORTHO05D007010 0.0e+00 1507.7 994 74.9
Cc04_g01260 Coffea canephora HOM05D005576 ORTHO05D007010 0.0e+00 1504.6 994 75.6
Rhsim12G0210100 Rhododendron simsii HOM05D005576 ORTHO05D007010 0.0e+00 1503.8 972 78.4
Gorai.011G059500 Gossypium raimondii HOM05D005576 ORTHO05D007010 0.0e+00 1502.3 993 77.4
Nn6g35707 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1501.1 993 74.8
Gohir.A10G053800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1500.7 993 77.3
Peaxi162Scf00038g02138 Petunia axillaris HOM05D005576 ORTHO05D007010 0.0e+00 1499.6 1077 71.0
CiPaw.02G135100 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1499.2 993 75.6
CSS0000574 Camellia sinensis var. sinensis HOM05D005576 ORTHO05D007010 0.0e+00 1493.0 997 75.9
CANSAT56G3183 Cannabis sativa HOM05D005576 ORTHO05D007010 0.0e+00 1493.0 993 75.5
Glyma.19G263400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1491.5 993 76.6
VMungo1309G3067 Vigna mungo HOM05D005576 ORTHO05D007010 0.0e+00 1489.9 994 76.3
Aqoxy7G04073 Aquilegia oxysepala HOM05D005576 ORTHO05D007010 0.0e+00 1489.6 994 75.4
ECA232G2029 Erigeron canadensis HOM05D005576 ORTHO05D007010 0.0e+00 1489.2 993 74.9
CsaV3_7G034420 Cucumis sativus L. HOM05D005576 ORTHO05D007010 0.0e+00 1486.5 994 75.2
Migut.I01082 Erythranthe guttata HOM05D005576 ORTHO05D007010 0.0e+00 1486.1 995 75.4
Thhalv10018070m.g Eutrema salsugineum HOM05D005576 ORTHO05D007010 0.0e+00 1486.1 993 75.0
ClCG09G001010 Citrullus lanatus HOM05D005576 ORTHO05D007010 0.0e+00 1481.5 1007 74.7
MELO3C024350.2 Cucumis melo HOM05D005576 ORTHO05D007010 0.0e+00 1479.5 994 74.8
Sc15g0000400 Simmondsia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1478.4 995 76.0
AT1G72560 Arabidopsis thaliana HOM05D005576 ORTHO05D007010 0.0e+00 1473.8 993 73.8
Lj5C36G17 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1472.2 988 74.5
DCAR_026415 Daucus carota HOM05D005576 ORTHO05D007010 0.0e+00 1471.4 963 75.5
PGR102G0536 Punica granatum HOM05D005576 ORTHO05D007010 0.0e+00 1469.5 1000 76.3
Aa31LG4G2910 Aethionema arabicum HOM05D005576 ORTHO05D007010 0.0e+00 1467.6 994 73.5
Ciclev10024809m.g Citrus clementina HOM05D005576 ORTHO05D007010 0.0e+00 1465.7 993 75.6
Lalb_Chr04g0261101 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1459.1 994 74.8
CARHR065500 Cardamine hirsuta HOM05D005576 ORTHO05D007010 0.0e+00 1458.4 993 73.5
Ca_09568_v3 Cicer arietinum L. HOM05D005576 ORTHO05D007010 0.0e+00 1455.3 993 74.2
Lalb_Chr15g0076791 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1454.1 994 74.5
Psat3g000040 Pisum sativum HOM05D005576 ORTHO05D007010 0.0e+00 1453.0 993 73.9
Lj1g0011724 Lotus japonicus HOM05D005576 ORTHO05D007010 0.0e+00 1452.2 993 73.9
Sed0003060 Sechium edule HOM05D005576 ORTHO05D007010 0.0e+00 1452.2 994 73.3
TPR.G28874 Trifolium pratense HOM05D005576 ORTHO05D007010 0.0e+00 1449.9 993 73.9
Gohir.D10G055800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1449.5 965 77.1
Oeu000412.2 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1449.5 995 74.7
EL10Ac7g16417 Beta vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1444.9 996 74.5
Ah.08g216850 Amaranthus hybridus HOM05D005576 ORTHO05D007010 0.0e+00 1442.2 995 74.2
MSTRG.4792 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1439.1 996 73.9
Carub.0002s1942 Capsella rubella HOM05D005576 ORTHO05D007010 0.0e+00 1439.1 993 72.2
THA.LOC104812251 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1439.1 993 72.9
MBI13_g12059_MAGBIO Magnolia biondii HOM05D005576 ORTHO05D007010 0.0e+00 1437.6 994 73.4
SGA_v2.0_scaffold71G23839 Striga asiatica HOM05D005576 ORTHO05D007010 0.0e+00 1430.6 995 73.0
Duzib160G0875 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1423.3 996 73.7
AL2G32250 Arabidopsis lyrata HOM05D005576 ORTHO05D007010 0.0e+00 1421.4 993 71.9
Oeu015487.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1419.8 965 75.1
Sp5g27640 Schrenkiella parvula HOM05D005576 ORTHO05D007010 0.0e+00 1413.7 993 72.3
Glyma.03G264400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1413.3 994 73.5
SalBow6G0288 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1412.5 983 72.5
SalBow6G5091 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1412.5 983 72.5
Medtr7g117565 Medicago truncatula HOM05D005576 ORTHO05D007010 0.0e+00 1411.4 998 71.4
FAN02G3375 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1407.5 993 72.4
FAN14G0396 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1401.3 913 76.9
Actinidia25327 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1393.6 900 77.2
PSO421G0066 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1380.5 1005 70.1
BolC6t39733H Brassica oleracea HOM05D005576 ORTHO05D007010 0.0e+00 1374.0 996 69.9
A07p38760 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1372.5 995 69.9
C06p46920 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1370.9 996 69.7
BraA07t31429Z Brassica rapa HOM05D005576 ORTHO05D007010 0.0e+00 1366.3 996 69.9
MSTRG.10949 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1364.7 995 70.7
arahy.Tifrunner.gnm1.ann1.E27NE4 Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1359.4 998 69.6
Solyc03g122370.4 Solanum lycopersicum HOM05D005576 ORTHO05D007010 0.0e+00 1351.7 993 69.2
arahy.Tifrunner.gnm1.ann1.W8MD5J Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1346.6 1028 67.8
PSO063G0826 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1345.1 999 69.2
Hund18687 Selenicereus undatus HOM05D005576 ORTHO05D007010 0.0e+00 1322.8 942 72.6
ATR0598G079 Amborella trichopoda HOM05D005576 ORTHO05D007010 0.0e+00 1290.0 972 66.0
AUR62001476 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1273.1 966 68.3
Lj9A532T67 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1259.2 913 71.9
Oeu015486.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1245.7 864 74.7
CDE05G1788 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 0.0e+00 1223.8 993 61.0
AUR62009889 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1151.3 1001 61.9
Phvul.009G263000 Phaseolus vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1078.5 727 76.6
Eucgr.F04406 Eucalyptus grandis HOM05D005576 ORTHO05D007010 0.0e+00 1076.6 914 63.3
CDE11G0151 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 3.0e-310 1068.5 993 54.9
Mapoly0019s0146 Marchantia polymorpha HOM05D005576 ORTHO05D007010 1.0e-294 1016.9 1002 51.9
Pp3c12_21910 Physcomitrium patens HOM05D005576 ORTHO05D007010 2.0e-290 1002.7 999 51.1
Zm00001eb327340 Zea mays HOM05D005576 ORTHO05D007010 8.5e-289 997.3 1001 52.9
Zm00001eb109040 Zea mays HOM05D005576 ORTHO05D007010 3.2e-288 995.3 1001 52.8
Os07g0613300 Oryza sativa ssp. japonica HOM05D005576 ORTHO05D007010 6.3e-284 981.1 1002 52.4
Actinidia27733 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.9e-280 969.5 614 79.2
Actinidia26822 Actinidia chinensis HOM05D005576 ORTHO05D007010 9.8e-277 957.2 601 79.9
unitig_899.g14764 Utricularia gibba HOM05D005576 ORTHO05D007010 1.4e-270 936.8 844 58.8
HPP92_026306 Vanilla planifolia HOM05D005576 ORTHO05D007010 5.4e-267 924.9 744 63.4
FAN05G3283 Fragaria x ananassa HOM05D005576 ORTHO05D007010 5.6e-264 914.8 609 75.2
SMO141G0108 Selaginella moellendorffii HOM05D005576 ORTHO05D007010 6.0e-258 894.8 987 47.7
SEGI_13199 Sequoiadendron giganteum HOM05D005576 ORTHO05D007010 7.3e-248 861.3 807 54.6
AagrBONN_evm.TU.Sc2ySwM_344.1866 Anthoceros agrestis HOM05D005576 ORTHO05D007010 3.1e-214 749.6 916 43.6
CBR_g44922 Chara braunii HOM05D005576 ORTHO05D007010 3.1e-214 749.6 1081 38.2
Cpa.g.sc589.4 Carica papaya HOM05D005576 ORTHO05D007010 6.5e-188 662.1 427 77.8
Dinv20426 Davidia involucrata HOM05D005576 ORTHO05D007010 3.0e-148 530.4 305 83.3
Aa31LG4G2950 Aethionema arabicum HOM05D005576 ORTHO05D007010 8.6e-148 528.9 356 73.6
Cpa.g.sc1732.1 Carica papaya HOM05D005576 ORTHO05D007010 3.3e-147 526.9 313 82.1
Cre12.g496200 Chlamydomonas reinhardtii HOM05D005576 ORTHO05D007010 2.2e-127 461.1 1193 29.6
Actinidia26823 Actinidia chinensis HOM05D005576 ORTHO05D007010 2.9e-95 354.4 264 66.3
Actinidia27734 Actinidia chinensis HOM05D005576 ORTHO05D007010 2.9e-95 354.4 264 66.3
MCO02G354 Micromonas commoda HOM05D005576 ORTHO05D007010 2.9e-79 301.2 1075 26.9
HPP92_026305 Vanilla planifolia HOM05D005576 ORTHO05D007010 5.5e-54 217.2 240 48.3
PRCOL_00005439 Prasinoderma coloniale HOM05D005576 ORTHO05D007010 6.1e-45 187.2 926 23.9
unitig_899.g14765 Utricularia gibba HOM05D005576 ORTHO05D007010 3.5e-32 144.8 109 64.2
BcaB05g24764 Brassica carinata HOM05D005576 ORTHO05D007010 1.0e-31 143.3 116 69.8
C02p30110 Brassica napus HOM05D005576 ORTHO05D007010 1.9e-30 139.0 145 49.7
BolC2t09060H Brassica oleracea HOM05D005576 ORTHO05D007010 2.2e-26 125.6 144 47.2
BcaB05g24763 Brassica carinata HOM05D000046 ORTHO05D000457 1.3e-23 116.3 85 65.9
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 3.5e-16 91.7 64 71.9
A02p18080 Brassica napus HOM05D005576 ORTHO05D041195 7.3e-06 57.4 45 68.9
BraA02t06855Z Brassica rapa HOM05D005576 ORTHO05D041195 7.3e-06 57.4 45 68.9
Sabra01G0142500 Salix brachista HOM05D005576 ORTHO05D007010 9.6e-06 57.0 50 56.0


User provided reference genes

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