Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 2.4e-107 392.1 193 100.0
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 1.8e-38 163.3 176 50.6
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 2.4e-30 136.3 115 59.1
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 7.0e-30 134.8 131 52.7
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 2.3e-28 129.8 136 50.0
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 2.9e-28 129.4 216 40.7
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 6.6e-28 128.3 198 41.9
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 6.6e-28 128.3 180 43.9
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 3.3e-27 125.9 196 40.3
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.2e-26 124.0 126 52.4
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 1.6e-26 123.6 112 53.6
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 2.1e-26 123.2 112 52.7
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 2.1e-26 123.2 113 55.8
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 2.8e-26 122.9 113 57.5
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 2.8e-26 122.9 189 40.2
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 3.6e-26 122.5 164 42.7
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 4.7e-26 122.1 109 54.1
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 6.1e-26 121.7 115 49.6
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 6.1e-26 121.7 115 49.6
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 8.0e-26 121.3 197 40.6
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.0e-25 120.9 136 48.5
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 1.0e-25 120.9 120 54.2
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 3.1e-25 119.4 120 50.8
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 5.2e-25 118.6 165 43.6
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 8.9e-25 117.9 205 38.5
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 8.9e-25 117.9 191 45.5
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 1.5e-24 117.1 141 47.5
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 2.6e-24 116.3 110 50.0
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 2.6e-24 116.3 110 50.0
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 2.6e-24 116.3 109 55.0
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 4.4e-24 115.5 109 50.5
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 4.4e-24 115.5 171 45.0
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 4.4e-24 115.5 176 42.6
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 5.8e-24 115.2 109 50.5
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 7.5e-24 114.8 109 50.5
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 7.5e-24 114.8 156 42.9
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 7.5e-24 114.8 211 39.8
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 7.5e-24 114.8 204 40.2
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 7.5e-24 114.8 227 35.7
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 9.8e-24 114.4 110 49.1
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 9.8e-24 114.4 129 48.8
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 1.3e-23 114.0 115 49.6
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 1.3e-23 114.0 189 42.3
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.7e-23 113.6 156 44.2
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 1.7e-23 113.6 169 42.6
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 2.2e-23 113.2 68 77.9
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 2.2e-23 113.2 150 46.7
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 2.9e-23 112.8 95 55.8
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 3.7e-23 112.5 182 42.3
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 6.4e-23 111.7 172 42.4
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 6.4e-23 111.7 127 46.5
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 8.3e-23 111.3 174 43.7
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 1.1e-22 110.9 189 39.2
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 1.1e-22 110.9 189 39.2
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 1.4e-22 110.5 88 55.7
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 1.9e-22 110.2 83 60.2
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 3.2e-22 109.4 83 56.6
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 3.2e-22 109.4 110 51.8
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 3.2e-22 109.4 140 45.7
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 4.1e-22 109.0 106 52.8
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 4.1e-22 109.0 106 52.8
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 5.4e-22 108.6 199 36.2
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 5.4e-22 108.6 82 61.0
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 7.0e-22 108.2 137 47.4
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 7.0e-22 108.2 173 43.4
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 9.2e-22 107.8 83 60.2
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 9.2e-22 107.8 162 45.7
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 1.2e-21 107.5 96 51.0
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 1.2e-21 107.5 101 51.5
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 1.6e-21 107.1 128 46.1
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 2.7e-21 106.3 193 39.4
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 3.5e-21 105.9 105 51.4
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 3.5e-21 105.9 85 58.8
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 4.6e-21 105.5 95 53.7
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 6.0e-21 105.1 108 50.9
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 7.8e-21 104.8 151 45.7
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 1.0e-20 104.4 137 43.1
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 1.3e-20 104.0 66 71.2
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.3e-20 104.0 202 38.6
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 1.3e-20 104.0 136 45.6
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 1.7e-20 103.6 165 37.0
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 1.7e-20 103.6 165 37.0
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 2.3e-20 103.2 178 39.9
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 3.0e-20 102.8 83 57.8
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 3.0e-20 102.8 92 53.3
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 3.0e-20 102.8 82 59.8
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 5.0e-20 102.1 124 48.4
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 6.6e-20 101.7 197 36.0
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 8.6e-20 101.3 92 53.3
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 8.6e-20 101.3 177 41.2
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 8.6e-20 101.3 207 37.2
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 1.1e-19 100.9 83 56.6
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.5e-19 100.5 152 42.8
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 2.5e-19 99.8 105 49.5
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 4.3e-19 99.0 82 56.1
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.6e-18 97.1 213 36.2
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 1.6e-18 97.1 78 56.4
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 2.1e-18 96.7 106 44.3
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 4.7e-18 95.5 65 67.7
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 8.1e-18 94.7 176 40.3
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 8.1e-18 94.7 66 65.2
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.3e-17 93.2 136 40.4
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 2.3e-17 93.2 76 57.9
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 3.1e-17 92.8 78 52.6
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 4.0e-17 92.4 146 40.4
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 5.2e-17 92.0 205 34.1
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 6.8e-17 91.7 191 35.6
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 6.8e-17 91.7 69 63.8
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 6.8e-17 91.7 82 53.7
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 8.9e-17 91.3 90 52.2
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 8.9e-17 91.3 68 67.6
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 8.9e-17 91.3 174 40.2
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.5e-16 90.5 163 39.9
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 2.0e-16 90.1 102 48.0
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 2.6e-16 89.7 66 63.6
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 2.6e-16 89.7 63 66.7
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 3.4e-16 89.4 171 39.2
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 4.4e-16 89.0 65 61.5
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 9.8e-16 87.8 202 36.1
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 9.8e-16 87.8 190 37.9
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 2.2e-15 86.7 76 50.0
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 2.2e-15 86.7 207 33.8
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 4.9e-15 85.5 190 36.8
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 6.4e-15 85.1 160 37.5
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 1.1e-14 84.3 80 52.5
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 1.4e-14 84.0 62 62.9
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 2.4e-14 83.2 80 51.2
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 3.2e-14 82.8 70 54.3
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 4.1e-14 82.4 57 68.4
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 5.4e-14 82.0 90 50.0
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 7.1e-14 81.6 102 41.2
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.2e-13 80.9 196 31.6
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.7e-13 79.7 55 69.1
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 3.5e-13 79.3 107 42.1
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 1.0e-12 77.8 79 49.4
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 1.3e-12 77.4 54 70.4
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.3e-12 77.4 90 44.4
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 3.0e-12 76.3 83 49.4
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 5.1e-12 75.5 79 53.2
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 6.6e-12 75.1 80 50.0
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 1.1e-11 74.3 53 66.0
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 1.1e-11 74.3 134 37.3
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 1.9e-11 73.6 53 67.9
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 4.3e-11 72.4 196 35.2
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 5.6e-11 72.0 56 58.9
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 4.7e-10 68.9 164 36.0
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 6.2e-10 68.6 49 61.2
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 1.1e-09 67.8 136 34.6
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 1.4e-09 67.4 70 55.7
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 4.0e-09 65.9 85 40.0
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 1.2e-08 64.3 53 60.4
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 5.8e-08 62.0 102 38.2
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 7.6e-08 61.6 95 34.7
Hund20657 Selenicereus undatus HOM05D002369 ORTHO05D002435 1.9e-06 57.0 86 40.7
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 9.2e-06 54.7 72 43.1


User provided reference genes

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