Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 1.1e-122 443.4 231 100.0
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 2.2e-107 392.5 229 87.8
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 2.5e-106 389.0 229 87.8
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 1.8e-104 382.9 229 88.6
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 2.6e-103 379.0 224 87.9
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 3.3e-103 378.6 224 87.9
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 4.4e-103 378.3 229 85.2
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.3e-102 376.7 231 84.8
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 2.2e-102 375.9 229 85.6
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.8e-102 375.6 231 84.4
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.1e-101 373.6 224 85.7
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 1.4e-101 373.2 231 84.8
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 1.4e-101 373.2 230 84.8
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 1.8e-101 372.9 211 91.5
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 2.4e-101 372.5 224 85.7
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 2.4e-101 372.5 229 84.3
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 3.1e-101 372.1 224 87.1
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 5.3e-101 371.3 224 85.7
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 3.5e-100 368.6 221 86.4
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 3.5e-100 368.6 227 83.7
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 5.9e-100 367.9 229 82.1
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 5.9e-100 367.9 224 84.4
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 7.7e-100 367.5 221 86.9
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 1.3e-99 366.7 229 82.5
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 1.7e-99 366.3 218 86.7
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 1.7e-99 366.3 224 84.4
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 2.9e-99 365.5 219 84.9
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 3.8e-99 365.2 229 81.7
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 1.1e-98 363.6 230 81.7
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 1.5e-98 363.2 237 79.3
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.5e-98 363.2 224 84.8
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 1.5e-98 363.2 224 84.4
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 2.5e-98 362.5 226 85.4
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 5.5e-98 361.3 224 82.6
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 5.5e-98 361.3 224 82.1
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 2.1e-97 359.4 229 82.1
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 2.7e-97 359.0 231 81.4
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 6.1e-97 357.8 226 82.3
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.0e-96 357.1 224 81.7
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 1.0e-96 357.1 221 83.7
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.4e-96 356.7 229 79.9
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 1.4e-96 356.7 226 83.2
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 3.0e-96 355.5 224 81.2
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 3.0e-96 355.5 220 84.1
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 3.0e-96 355.5 229 81.2
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 3.0e-96 355.5 294 67.7
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 4.0e-96 355.1 221 84.6
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 5.2e-96 354.8 221 81.9
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 5.2e-96 354.8 225 80.9
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.2e-95 353.6 229 80.3
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.2e-95 353.6 229 80.3
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 1.5e-95 353.2 218 85.3
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 3.3e-95 352.1 227 81.5
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 3.3e-95 352.1 229 80.3
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 3.3e-95 352.1 224 79.0
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 5.7e-95 351.3 229 79.9
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 7.5e-95 350.9 219 82.6
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 9.7e-95 350.5 219 80.8
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 1.7e-94 349.7 230 79.1
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 1.7e-94 349.7 225 80.0
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 1.7e-94 349.7 225 80.9
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 2.2e-94 349.4 225 80.4
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 2.8e-94 349.0 230 77.0
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 3.7e-94 348.6 221 81.0
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 4.8e-94 348.2 230 78.7
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 4.8e-94 348.2 230 78.3
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 6.3e-94 347.8 230 78.7
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 6.3e-94 347.8 222 81.5
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 1.1e-93 347.1 216 81.5
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 1.1e-93 347.1 219 79.9
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 1.4e-93 346.7 229 77.7
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 1.4e-93 346.7 216 81.5
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 1.8e-93 346.3 221 80.5
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 3.1e-93 345.5 238 75.6
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 4.1e-93 345.1 230 77.0
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 4.1e-93 345.1 230 77.0
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 5.3e-93 344.7 211 84.8
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 5.3e-93 344.7 220 82.3
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 7.0e-93 344.4 229 79.9
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 7.0e-93 344.4 225 79.6
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 7.0e-93 344.4 232 77.6
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 1.2e-92 343.6 232 77.2
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 1.2e-92 343.6 228 78.1
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 1.6e-92 343.2 221 80.1
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 1.6e-92 343.2 228 77.6
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 2.0e-92 342.8 226 78.3
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 2.0e-92 342.8 228 77.6
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 2.7e-92 342.4 231 77.9
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 2.7e-92 342.4 232 76.7
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 2.7e-92 342.4 220 81.8
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 2.7e-92 342.4 226 78.3
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 3.5e-92 342.0 231 77.9
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 3.5e-92 342.0 232 76.3
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 3.5e-92 342.0 231 77.9
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 3.5e-92 342.0 232 76.3
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 4.5e-92 341.7 252 73.4
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 4.5e-92 341.7 230 77.4
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 7.7e-92 340.9 231 76.6
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 1.3e-91 340.1 231 77.5
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 1.3e-91 340.1 225 78.7
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 1.7e-91 339.7 222 81.5
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 2.2e-91 339.3 225 79.1
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 2.9e-91 339.0 225 78.7
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 2.9e-91 339.0 225 78.2
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 5.0e-91 338.2 231 77.1
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 6.5e-91 337.8 228 76.3
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 9.4e-90 334.0 218 79.4
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 6.8e-88 327.8 225 76.0
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 8.8e-88 327.4 218 78.4
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 7.5e-87 324.3 232 73.3
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 2.8e-86 322.4 224 74.1
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 1.4e-85 320.1 219 74.4
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 4.1e-85 318.5 223 76.2
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 5.4e-85 318.2 212 77.4
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 7.0e-85 317.8 212 77.4
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 9.1e-85 317.4 216 75.5
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.0e-84 316.2 226 70.8
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 5.0e-83 311.6 214 75.2
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 6.5e-83 311.2 219 75.3
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 8.6e-83 310.8 230 70.4
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 4.7e-81 305.1 223 70.9
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 8.0e-81 304.3 231 70.6
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 3.7e-78 295.4 177 87.6
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 1.4e-77 293.5 177 83.6
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.8e-73 279.3 169 84.6
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 4.7e-73 278.5 190 77.9
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 6.8e-72 274.6 185 79.5
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 4.9e-70 268.5 162 87.0
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.4e-69 266.2 166 82.5
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 2.7e-68 262.7 204 71.1
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.3e-67 260.4 201 69.2
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 1.5e-66 256.9 162 82.7
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 7.3e-66 254.6 311 50.5
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.2e-65 253.8 190 73.7
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.6e-63 246.1 173 75.7
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 3.7e-62 242.3 234 57.7
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 3.7e-62 242.3 234 57.7
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.2e-61 239.2 162 79.0
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 9.2e-61 237.7 226 57.5
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 6.6e-59 231.5 185 65.9
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 1.9e-58 229.9 166 74.1
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 1.5e-55 220.3 163 71.8
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 1.4e-53 213.8 180 62.2
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 1.4e-53 213.8 185 60.5
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 1.0e-51 207.6 234 52.6
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 6.6e-51 204.9 185 58.4
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 3.2e-45 186.0 161 61.5
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 5.1e-35 152.1 227 44.1
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 1.6e-28 130.6 241 35.7
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 1.6e-25 120.6 68 85.3
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 5.5e-21 105.5 209 34.9
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 1.8e-19 100.5 214 32.7
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 2.8e-17 93.2 235 31.5
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 5.8e-15 85.5 200 33.0
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 4.2e-13 79.3 57 75.4
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 2.3e-11 73.6 50 72.0
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 3.0e-11 73.2 55 65.5
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 3.9e-11 72.8 42 76.2
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 1.3e-09 67.8 202 30.7
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 8.2e-09 65.1 51 64.7
Nitab4.5_0000780g0100 Nicotiana tabacum HOM05D004368 ORTHO05D004990 4.5e-07 59.3 161 32.9


User provided reference genes

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