Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G011500 Manihot esculenta HOM05D004903 ORTHO05D005849 4.0e-156 554.7 275 100.0
Potri.001G161800 Populus trichocarpa HOM05D004903 ORTHO05D005849 6.1e-112 407.9 276 73.2
Dinv20374 Davidia involucrata HOM05D004903 ORTHO05D005849 3.8e-106 388.7 280 68.6
CSS0022789 Camellia sinensis var. sinensis HOM05D004903 ORTHO05D005849 1.6e-104 383.3 277 67.5
Atru.chr1.4170 Acer truncatum HOM05D004903 ORTHO05D005849 2.1e-104 382.9 272 67.6
Prupe.3G030200 Prunus persica HOM05D004903 ORTHO05D005849 1.0e-103 380.6 280 70.4
QL05p000658 Quercus lobata HOM05D004903 ORTHO05D005849 5.7e-102 374.8 280 69.6
Actinidia25997 Actinidia chinensis HOM05D004903 ORTHO05D005849 1.3e-101 373.6 277 68.2
Duzib160G0805 Durio zibethinus HOM05D004903 ORTHO05D005849 1.7e-101 373.2 272 67.3
TAR624G0709 Trochodendron aralioides HOM05D004903 ORTHO05D005849 1.1e-100 370.5 276 66.7
RcHm_v2.0_Chr2g0148141 Rosa chinensis HOM05D004903 ORTHO05D005849 1.4e-100 370.2 286 66.1
CiPaw.01G210600 Carya illinoinensis HOM05D004903 ORTHO05D005849 1.8e-100 369.8 278 68.7
QL05p000751 Quercus lobata HOM05D004903 ORTHO05D005849 1.8e-100 369.8 280 68.6
Ciclev10026250m.g Citrus clementina HOM05D004903 ORTHO05D005849 2.7e-99 365.9 278 65.5
Thecc.06G131400 Theobroma cacao HOM05D004903 ORTHO05D005849 2.7e-99 365.9 272 66.5
Gorai.010G172600 Gossypium raimondii HOM05D004903 ORTHO05D005849 1.0e-98 364.0 270 68.5
FAN14G1686 Fragaria x ananassa HOM05D004903 ORTHO05D005849 3.9e-98 362.1 291 65.6
Gohir.A06G142500 Gossypium hirsutum HOM05D004903 ORTHO05D005849 3.9e-98 362.1 270 68.1
MD09G1171800 Malus domestica HOM05D004903 ORTHO05D005849 3.9e-98 362.1 281 67.3
FAN09G2808 Fragaria x ananassa HOM05D004903 ORTHO05D005849 8.6e-98 360.9 291 65.6
TWI59G0350 Tripterygium wilfordii HOM05D004903 ORTHO05D005849 8.6e-98 360.9 283 62.9
FAN02G0327 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.1e-97 360.5 287 66.2
FAN14G0435 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.1e-97 360.5 287 66.2
Sabra03G0044200 Salix brachista HOM05D004903 ORTHO05D005849 1.5e-97 360.1 303 62.0
GSVIVG01016657001 Vitis vinifera HOM05D004903 ORTHO05D005849 2.5e-97 359.4 276 64.1
FvH4_6g36070 Fragaria vesca HOM05D004903 ORTHO05D005849 3.3e-97 359.0 289 65.1
vmacro18714 Vaccinium macrocarpon HOM05D004903 ORTHO05D005849 1.0e-95 354.0 277 63.5
Eucgr.J02586 Eucalyptus grandis HOM05D004903 ORTHO05D005849 6.8e-95 351.3 276 64.5
Actinidia24416 Actinidia chinensis HOM05D004903 ORTHO05D005849 2.6e-94 349.4 285 63.2
Sabra01G0130700 Salix brachista HOM05D004903 ORTHO05D005849 2.6e-94 349.4 299 64.5
PGSC0003DMG400004869 Solanum tuberosum HOM05D004903 ORTHO05D005849 3.4e-94 349.0 281 62.6
MD17G1155200 Malus domestica HOM05D004903 ORTHO05D005849 9.8e-94 347.4 291 63.2
CANSAT56G0172 Cannabis sativa HOM05D004903 ORTHO05D005849 1.7e-93 346.7 279 63.8
Nitab4.5_0006190g0020 Nicotiana tabacum HOM05D004903 ORTHO05D005849 3.7e-93 345.5 277 63.9
CAN.G1633.2 Capsicum annuum HOM05D004903 ORTHO05D005849 1.1e-92 344.0 280 63.2
Lj3g0025901 Lotus japonicus HOM05D004903 ORTHO05D005849 1.1e-92 344.0 273 63.0
Peaxi162Scf00207g01534 Petunia axillaris HOM05D004903 ORTHO05D005849 5.4e-92 341.7 280 62.1
Solyc06g063130.3 Solanum lycopersicum HOM05D004903 ORTHO05D005849 1.2e-91 340.5 278 61.2
ClCG09G001430 Citrullus lanatus HOM05D004903 ORTHO05D005849 2.0e-91 339.7 285 62.1
Lj5A28T47 Lonicera japonica HOM05D004903 ORTHO05D005849 3.5e-91 339.0 333 53.5
Hund18627 Selenicereus undatus HOM05D004903 ORTHO05D005849 3.5e-91 339.0 273 62.3
Sopen06g022580 Solanum pennellii HOM05D004903 ORTHO05D005849 1.0e-90 337.4 281 60.1
DCAR_022636 Daucus carota HOM05D004903 ORTHO05D005849 1.3e-90 337.0 284 60.2
Glyma.07G046600 Glycine max HOM05D004903 ORTHO05D005849 1.3e-90 337.0 275 62.9
Gorai.010G236300 Gossypium raimondii HOM05D004903 ORTHO05D005849 6.6e-90 334.7 272 63.6
Gohir.D06G202400 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.5e-89 333.6 272 63.2
THA.LOC104810400 Tarenaya hassleriana HOM05D004903 ORTHO05D005849 1.5e-89 333.6 276 62.3
EL10Ac7g18248 Beta vulgaris HOM05D004903 ORTHO05D005849 1.9e-89 333.2 272 62.9
CsaV3_7G033900 Cucumis sativus L. HOM05D004903 ORTHO05D005849 4.3e-89 332.0 285 58.9
Migut.I01143 Erythranthe guttata HOM05D004903 ORTHO05D005849 4.3e-89 332.0 279 62.0
AUR62001391 Chenopodium quinoa HOM05D004903 ORTHO05D005849 7.3e-89 331.3 274 62.8
Thhalv10011709m.g Eutrema salsugineum HOM05D004903 ORTHO05D005849 9.5e-89 330.9 278 60.1
CARHR044070 Cardamine hirsuta HOM05D004903 ORTHO05D005849 6.2e-88 328.2 277 61.4
Lalb_Chr17g0343171 Lupinus albus HOM05D004903 ORTHO05D005849 6.2e-88 328.2 272 60.3
BcaB07g33303 Brassica carinata HOM05D004903 ORTHO05D005849 1.4e-87 327.0 273 61.5
A06p00790 Brassica napus HOM05D004903 ORTHO05D005849 1.4e-87 327.0 273 61.9
BcaC08g43554 Brassica carinata HOM05D004903 ORTHO05D005849 3.1e-87 325.9 273 61.9
C06p09540 Brassica napus HOM05D004903 ORTHO05D005849 3.1e-87 325.9 276 61.6
BolC6t36028H Brassica oleracea HOM05D004903 ORTHO05D005849 3.1e-87 325.9 276 61.6
BraA06t23313Z Brassica rapa HOM05D004903 ORTHO05D005849 4.0e-87 325.5 273 61.5
AT1G53760 Arabidopsis thaliana HOM05D004903 ORTHO05D005849 1.2e-86 323.9 273 60.1
AL1G62450 Arabidopsis lyrata HOM05D004903 ORTHO05D005849 2.0e-86 323.2 273 59.7
MSTRG.10905 Avicennia marina HOM05D004903 ORTHO05D005849 2.0e-86 323.2 288 59.0
A05p17920 Brassica napus HOM05D004903 ORTHO05D005849 2.0e-86 323.2 273 61.9
C06p15280 Brassica napus HOM05D004903 ORTHO05D005849 2.6e-86 322.8 273 60.8
COL.COLO4_30880 Corchorus olitorius HOM05D004903 ORTHO05D005849 2.6e-86 322.8 230 70.0
BolC6t36703H Brassica oleracea HOM05D004903 ORTHO05D005849 3.4e-86 322.4 273 60.8
Sp1g40280 Schrenkiella parvula HOM05D004903 ORTHO05D005849 4.4e-86 322.0 273 60.4
BraA05t20686Z Brassica rapa HOM05D004903 ORTHO05D005849 5.8e-86 321.6 273 61.5
HanXRQChr12g0360041 Helianthus annuus HOM05D004903 ORTHO05D005849 7.5e-86 321.2 272 60.7
BcaC08g44129 Brassica carinata HOM05D004903 ORTHO05D005849 9.8e-86 320.9 273 60.8
Gohir.A06G194700 Gossypium hirsutum HOM05D004903 ORTHO05D005849 9.8e-86 320.9 272 62.1
Glyma.16G015600 Glycine max HOM05D004903 ORTHO05D005849 1.3e-85 320.5 275 60.7
PSO724G0850 Papaver somniferum HOM05D004903 ORTHO05D005849 2.9e-85 319.3 277 58.8
Sed0027894 Sechium edule HOM05D004903 ORTHO05D005849 3.7e-85 318.9 287 59.2
BcaB02g10893 Brassica carinata HOM05D004903 ORTHO05D005849 6.4e-85 318.2 273 60.1
PSO135G0609 Papaver somniferum HOM05D004903 ORTHO05D005849 8.3e-85 317.8 274 58.4
Aqoxy7G00919 Aquilegia oxysepala HOM05D004903 ORTHO05D005849 1.1e-84 317.4 285 57.2
Carub.0001s4303 Capsella rubella HOM05D004903 ORTHO05D005849 1.4e-84 317.0 273 58.6
Lsat_1_v5_gn_5_137641 Lactuca sativa HOM05D004903 ORTHO05D005849 1.4e-84 317.0 266 61.7
Nn8g38503 Nelumbo nucifera HOM05D004903 ORTHO05D005849 1.9e-84 316.6 276 59.4
arahy.Tifrunner.gnm1.ann1.97GHXX Arachis hypogaea HOM05D004903 ORTHO05D005849 3.2e-84 315.8 277 59.2
Medtr8g023500 Medicago truncatula HOM05D004903 ORTHO05D005849 7.1e-84 314.7 284 57.0
SalBow6G3230 Salvia bowleyana HOM05D004903 ORTHO05D005849 9.2e-84 314.3 274 58.4
Sc12g0011010 Simmondsia chinensis HOM05D004903 ORTHO05D005849 2.7e-83 312.8 243 65.4
Dinv37814 Davidia involucrata HOM05D004903 ORTHO05D005849 1.3e-82 310.5 211 70.1
Psat4g164720 Pisum sativum HOM05D004903 ORTHO05D005849 2.3e-82 309.7 272 58.1
Rhsim08G0245600 Rhododendron simsii HOM05D004903 ORTHO05D005849 3.9e-82 308.9 196 77.6
Nitab4.5_0010570g0050 Nicotiana tabacum HOM05D004903 ORTHO05D005849 1.1e-81 307.4 277 58.5
Phvul.010G122300 Phaseolus vulgaris HOM05D004903 ORTHO05D005849 1.1e-81 307.4 276 59.1
Cfa003452 Carpinus fangiana HOM05D004903 ORTHO05D005849 1.9e-81 306.6 211 73.0
Aa31LG10G1530 Aethionema arabicum HOM05D000070 ORTHO05D003301 5.6e-81 305.1 251 62.2
arahy.Tifrunner.gnm1.ann1.AA2XIP Arachis hypogaea HOM05D004903 ORTHO05D005849 2.1e-80 303.1 279 56.3
arahy.Tifrunner.gnm1.ann1.HDKQ14 Arachis hypogaea HOM05D004903 ORTHO05D005849 1.8e-79 300.1 300 54.7
arahy.Tifrunner.gnm1.ann1.3XU7EE Arachis hypogaea HOM05D004903 ORTHO05D005849 5.2e-79 298.5 276 56.9
arahy.Tifrunner.gnm1.ann1.M9BVNS Arachis hypogaea HOM05D004903 ORTHO05D005849 1.2e-78 297.4 277 56.3
unitig_32.g11002 Utricularia gibba HOM05D004903 ORTHO05D005849 1.2e-78 297.4 281 53.4
Cpa.g.sc25.203 Carica papaya HOM05D004903 ORTHO05D005849 4.4e-78 295.4 185 76.8
Cc04_g00600 Coffea canephora HOM05D004903 ORTHO05D005849 4.4e-78 295.4 287 56.4
Gorai.011G054300 Gossypium raimondii HOM05D004903 ORTHO05D005849 8.4e-77 291.2 218 66.5
MELO3C024303.2 Cucumis melo HOM05D004903 ORTHO05D005849 2.4e-76 289.7 193 72.0
HPP92_000828 Vanilla planifolia HOM05D004903 ORTHO05D005849 1.7e-74 283.5 240 58.3
Ca_23466_v3 Cicer arietinum L. HOM05D004903 ORTHO05D005849 5.1e-74 282.0 231 61.5
Hma1.2p1_1999F.1_g310500 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 5.1e-74 282.0 184 73.9
ATR0006G080 Amborella trichopoda HOM05D004903 ORTHO05D005849 6.6e-74 281.6 270 54.4
arahy.Tifrunner.gnm1.ann1.ZQ2A8X Arachis hypogaea HOM05D004903 ORTHO05D005849 8.6e-74 281.2 296 52.4
TPR.G15248 Trifolium pratense HOM05D004903 ORTHO05D005849 1.5e-73 280.4 232 60.8
AUR62025608 Chenopodium quinoa HOM05D004903 ORTHO05D005849 1.9e-73 280.0 272 56.6
Zm00001eb207930 Zea mays HOM05D004903 ORTHO05D005849 9.6e-73 277.7 273 51.3
arahy.Tifrunner.gnm1.ann1.5Z4EMJ Arachis hypogaea HOM05D004903 ORTHO05D005849 1.2e-72 277.3 275 53.8
VMungo0331G0875 Vigna mungo HOM05D004903 ORTHO05D005849 1.6e-72 276.9 219 63.0
SGA_v2.0_scaffold71G23946 Striga asiatica HOM05D004903 ORTHO05D005849 1.1e-71 274.2 286 53.8
Oeu053414.1 Olea europaea HOM05D004903 ORTHO05D005849 2.4e-71 273.1 205 65.9
Os02g0152600 Oryza sativa ssp. japonica HOM05D004903 ORTHO05D005849 2.4e-71 273.1 280 50.4
Hma1.2p1_0090F.1_g045680 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 8.9e-71 271.2 218 62.8
MBI17_g12875_MAGBIO Magnolia biondii HOM05D004903 ORTHO05D005849 2.6e-70 269.6 276 50.7
Gohir.A10G050050 Gossypium hirsutum HOM05D004903 ORTHO05D005849 5.8e-70 268.5 263 55.1
CDE06G0378 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 3.2e-68 262.7 229 58.1
ECA234G0009 Erigeron canadensis HOM05D004903 ORTHO05D005849 3.2e-68 262.7 223 58.7
Actinidia31143 Actinidia chinensis HOM05D004903 ORTHO05D005849 1.0e-66 257.7 214 61.7
Oeu019513.1 Olea europaea HOM05D004903 ORTHO05D005849 6.6e-66 255.0 190 66.3
CDE04G1042 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 4.8e-64 248.8 230 57.4
Sed0021101 Sechium edule HOM05D004903 ORTHO05D005849 1.7e-61 240.4 212 58.5
Gohir.D10G050650 Gossypium hirsutum HOM05D004903 ORTHO05D005849 2.2e-53 213.4 161 64.6
Mapoly0021s0048 Marchantia polymorpha HOM05D004903 ORTHO05D005849 2.5e-49 199.9 277 38.6
Haze_16148 Corylus avellana HOM05D003205 ORTHO05D003746 2.4e-47 193.4 196 56.1
Haze_16144 Corylus avellana HOM05D003205 ORTHO05D003746 3.1e-47 193.0 196 55.6
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 6.0e-43 178.7 216 48.1
AagrBONN_evm.TU.Sc2ySwM_228.2429 Anthoceros agrestis HOM05D004903 ORTHO05D005849 1.9e-41 173.7 238 39.1
Gohir.D06G148232 Gossypium hirsutum HOM05D004903 ORTHO05D005849 3.1e-39 166.4 116 70.7
BcaB02g07096 Brassica carinata HOM05D000219 ORTHO05D000226 1.0e-37 161.4 112 70.5
BcaB07g32153 Brassica carinata HOM05D004903 ORTHO05D005849 8.4e-37 158.3 116 67.2
CBR_g34164 Chara braunii HOM05D004903 ORTHO05D005849 1.4e-36 157.5 207 39.1
Pp3c13_9790 Physcomitrium patens HOM05D004903 ORTHO05D005849 7.4e-33 145.2 271 33.9
arahy.Tifrunner.gnm1.ann1.AT31DH Arachis hypogaea HOM05D004903 ORTHO05D005849 1.4e-31 141.0 96 69.8
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 2.4e-31 140.2 109 62.4
Duzib192G1079 Durio zibethinus HOM05D004903 ORTHO05D005849 1.5e-22 110.9 205 36.1
Gohir.D02G109866 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.0e-21 108.2 84 60.7
SEGI_28585 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 6.5e-21 105.5 122 47.5
SEGI_38260 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 6.5e-21 105.5 131 45.8
CDE06G0441 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 1.1e-20 104.8 108 53.7
Cpa.g.sc25.204 Carica papaya HOM05D004903 ORTHO05D005849 1.6e-19 100.9 109 47.7
Cre08.g358557 Chlamydomonas reinhardtii HOM05D004903 ORTHO05D005849 8.8e-18 95.1 195 30.8
Hma1.2p1_0090F.1_g045690 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 1.3e-16 91.3 69 66.7
PRCOL_00005128 Prasinoderma coloniale HOM05D004903 ORTHO05D005849 1.6e-14 84.3 200 34.0
Glyma.16G014900 Glycine max HOM05D004903 ORTHO05D005849 7.7e-14 82.0 100 46.0
arahy.Tifrunner.gnm1.ann1.1E2DFU Arachis hypogaea HOM05D001485 ORTHO05D005849 2.3e-10 70.5 49 75.5
TPR.G26438 Trifolium pratense HOM05D004903 ORTHO05D005849 2.3e-10 70.5 71 49.3
Actinidia21845 Actinidia chinensis HOM05D004903 ORTHO05D005849 9.7e-09 65.1 44 68.2
MCO07G235 Micromonas commoda HOM05D004903 ORTHO05D005849 9.7e-09 65.1 187 26.7
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 1.3e-08 64.7 56 57.1
TPR.G14723 Trifolium pratense HOM05D004903 ORTHO05D005849 7.7e-06 55.5 35 77.1


User provided reference genes

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