Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G010600 Manihot esculenta HOM05D006671 ORTHO05D008637 0.0e+00 1097.8 540 100.0
Potri.001G161100 Populus trichocarpa HOM05D006671 ORTHO05D008637 6.8e-232 807.4 540 72.4
COL.COLO4_26801 Corchorus olitorius HOM05D006671 ORTHO05D008637 5.4e-213 744.6 541 68.0
Sabra01G0131200 Salix brachista HOM05D006671 ORTHO05D008637 3.3e-210 735.3 581 63.9
Thecc.06G048900 Theobroma cacao HOM05D006671 ORTHO05D008637 3.3e-210 735.3 543 66.3
Duzib160G0342 Durio zibethinus HOM05D006671 ORTHO05D008637 3.4e-207 725.3 543 65.2
Gohir.D13G119900 Gossypium hirsutum HOM05D006671 ORTHO05D008637 5.8e-207 724.5 542 64.8
Gorai.013G134300 Gossypium raimondii HOM05D006671 ORTHO05D008637 4.9e-206 721.5 546 64.3
CiPaw.03G010100 Carya illinoinensis HOM05D006671 ORTHO05D008637 3.9e-203 711.8 549 65.9
Phvul.010G121800 Phaseolus vulgaris HOM05D006671 ORTHO05D008637 3.9e-203 711.8 546 65.0
Ciclev10025368m.g Citrus clementina HOM05D006671 ORTHO05D008637 1.6e-201 706.4 542 65.1
Glyma.16G015100 Glycine max HOM05D006671 ORTHO05D008637 2.1e-201 706.1 549 65.0
Glyma.07G047100 Glycine max HOM05D006671 ORTHO05D008637 2.8e-201 705.7 543 64.8
CSS0038482 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 9.0e-200 700.7 537 64.6
CANSAT56G3116 Cannabis sativa HOM05D006671 ORTHO05D008637 4.9e-198 694.9 542 63.7
Lalb_Chr10g0101031 Lupinus albus HOM05D006671 ORTHO05D008637 1.9e-197 693.0 545 63.5
Atru.chr1.4182 Acer truncatum HOM05D006671 ORTHO05D008637 2.1e-196 689.5 544 64.0
TPR.G26443 Trifolium pratense HOM05D006671 ORTHO05D008637 2.7e-196 689.1 545 64.0
Lj3g0013980 Lotus japonicus HOM05D006671 ORTHO05D008637 3.9e-195 685.3 556 61.7
Eucgr.I02172 Eucalyptus grandis HOM05D006671 ORTHO05D008637 4.8e-193 678.3 543 63.0
Rhsim08G0246200 Rhododendron simsii HOM05D006671 ORTHO05D008637 2.4e-192 676.0 552 60.9
Psat4g165440 Pisum sativum HOM05D006671 ORTHO05D008637 5.8e-191 671.4 545 62.6
TAR623G0926 Trochodendron aralioides HOM05D006671 ORTHO05D008637 2.9e-190 669.1 536 61.0
vmacro18708 Vaccinium macrocarpon HOM05D006671 ORTHO05D008637 1.1e-189 667.2 542 61.4
MD09G1171100 Malus domestica HOM05D006671 ORTHO05D008637 7.1e-189 664.5 541 61.7
Medtr8g023620 Medicago truncatula HOM05D006671 ORTHO05D008637 2.7e-188 662.5 547 61.2
Haze_14039 Corylus avellana HOM05D006671 ORTHO05D008637 1.0e-187 660.6 637 55.4
Thhalv10011378m.g Eutrema salsugineum HOM05D006671 ORTHO05D008637 1.0e-187 660.6 540 59.6
AT1G53710 Arabidopsis thaliana HOM05D006671 ORTHO05D008637 8.7e-187 657.5 540 59.1
TWI59G0357 Tripterygium wilfordii HOM05D006671 ORTHO05D008637 1.1e-186 657.1 541 62.7
Aa31LG10G1550 Aethionema arabicum HOM05D006671 ORTHO05D008637 5.6e-186 654.8 540 60.9
Prupe.3G029600 Prunus persica HOM05D006671 ORTHO05D008637 9.6e-186 654.1 541 60.4
RcHm_v2.0_Chr2g0148251 Rosa chinensis HOM05D006671 ORTHO05D008637 9.6e-186 654.1 535 62.4
Sp1g40250 Schrenkiella parvula HOM05D006671 ORTHO05D008637 1.3e-185 653.7 540 58.1
Nn8g41287 Nelumbo nucifera HOM05D006671 ORTHO05D008637 8.2e-185 651.0 536 58.2
Sopen12g024210 Solanum pennellii HOM05D006671 ORTHO05D008637 1.2e-183 647.1 538 59.7
Carub.0001s4299 Capsella rubella HOM05D006671 ORTHO05D008637 1.5e-183 646.7 540 58.0
BcaB04g17063 Brassica carinata HOM05D006671 ORTHO05D008637 1.7e-182 643.3 540 58.5
AL1G62410 Arabidopsis lyrata HOM05D006671 ORTHO05D008637 2.2e-182 642.9 543 57.6
PGSC0003DMG402028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 2.2e-182 642.9 538 59.9
BolC3t21495H Brassica oleracea HOM05D006671 ORTHO05D008637 3.8e-182 642.1 540 58.1
CARHR044010 Cardamine hirsuta HOM05D006671 ORTHO05D008637 6.5e-182 641.3 540 58.9
arahy.Tifrunner.gnm1.ann1.NMV212 Arachis hypogaea HOM05D006671 ORTHO05D008637 1.9e-181 639.8 542 59.0
Solyc12g055740.2 Solanum lycopersicum HOM05D006671 ORTHO05D008637 2.5e-181 639.4 538 59.5
Actinidia24409 Actinidia chinensis HOM05D006671 ORTHO05D008637 4.2e-181 638.6 501 62.1
BraA08t32194Z Brassica rapa HOM05D006671 ORTHO05D008637 4.2e-181 638.6 541 58.4
BcaC01g01410 Brassica carinata HOM05D006671 ORTHO05D008637 5.5e-181 638.3 537 58.1
Cpa.g.sc229.10 Carica papaya HOM05D006671 ORTHO05D008637 5.5e-181 638.3 547 58.5
C03p91740 Brassica napus HOM05D006671 ORTHO05D008637 2.1e-180 636.3 537 57.9
PGR119G0898 Punica granatum HOM05D006671 ORTHO05D008637 2.1e-180 636.3 545 58.9
arahy.Tifrunner.gnm1.ann1.YS0GDU Arachis hypogaea HOM05D006671 ORTHO05D008637 2.7e-180 636.0 542 58.7
A08p01430 Brassica napus HOM05D006671 ORTHO05D008637 3.5e-180 635.6 540 58.3
CAN.G390.42 Capsicum annuum HOM05D006671 ORTHO05D008637 1.3e-179 633.6 538 58.9
DCAR_007665 Daucus carota HOM05D006671 ORTHO05D008637 4.3e-178 628.6 564 55.3
PGSC0003DMG401028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 1.4e-176 623.6 538 58.9
FvH4_6g36250 Fragaria vesca HOM05D006671 ORTHO05D008637 1.0e-174 617.5 534 59.4
Migut.D00903 Erythranthe guttata HOM05D006671 ORTHO05D008637 3.8e-174 615.5 536 56.7
FAN14G1234 Fragaria x ananassa HOM05D006671 ORTHO05D008637 3.8e-174 615.5 534 59.2
Cc04_g00530 Coffea canephora HOM05D006671 ORTHO05D008637 5.0e-174 615.1 543 56.5
Sc12g0010960 Simmondsia chinensis HOM05D006671 ORTHO05D008637 1.1e-173 614.0 539 58.1
PSO017G0187 Papaver somniferum HOM05D006671 ORTHO05D008637 2.3e-171 606.3 543 59.1
Aqoxy2G04033 Aquilegia oxysepala HOM05D006671 ORTHO05D008637 3.0e-171 605.9 539 56.2
ECA234G0268 Erigeron canadensis HOM05D006671 ORTHO05D008637 3.7e-169 599.0 536 55.8
SalBow7G2314 Salvia bowleyana HOM05D006671 ORTHO05D008637 6.3e-169 598.2 536 55.6
Lj5C27T5 Lonicera japonica HOM05D006671 ORTHO05D008637 6.9e-168 594.7 496 60.5
MSTRG.9549 Avicennia marina HOM05D006671 ORTHO05D008637 1.0e-166 590.9 535 57.2
EL10Ac7g18235 Beta vulgaris HOM05D006671 ORTHO05D008637 1.3e-166 590.5 535 57.8
FAN09G2187 Fragaria x ananassa HOM05D006671 ORTHO05D008637 8.5e-166 587.8 534 57.1
MBI13_g05970_MAGBIO Magnolia biondii HOM05D006671 ORTHO05D008637 2.5e-165 586.3 481 60.9
HPP92_002242 Vanilla planifolia HOM05D006671 ORTHO05D008637 5.5e-165 585.1 540 54.1
GSVIVG01026409001 Vitis vinifera HOM05D006671 ORTHO05D008637 2.6e-162 576.2 760 43.7
Os03g0397300 Oryza sativa ssp. japonica HOM05D006671 ORTHO05D008637 1.3e-161 573.9 541 53.6
HanXRQChr10g0311581 Helianthus annuus HOM05D006671 ORTHO05D008637 2.2e-161 573.2 541 54.5
SGA_v2.0_scaffold4G02101 Striga asiatica HOM05D006671 ORTHO05D008637 3.7e-161 572.4 538 54.8
FAN14G2634 Fragaria x ananassa HOM05D006671 ORTHO05D008637 3.1e-160 569.3 534 56.4
Lsat_1_v5_gn_5_137600 Lactuca sativa HOM05D006671 ORTHO05D008637 8.5e-158 561.2 527 53.9
Zm00001eb392730 Zea mays HOM05D006671 ORTHO05D008637 1.1e-157 560.8 541 53.2
CDE06G0010 Ceratophyllum demersum HOM05D006671 ORTHO05D008637 1.3e-153 547.4 485 57.1
Ah.08g217540 Amaranthus hybridus HOM05D006671 ORTHO05D008637 5.3e-152 542.0 533 53.8
Actinidia33812 Actinidia chinensis HOM05D006671 ORTHO05D008637 6.5e-150 535.0 531 53.5
AUR62001377 Chenopodium quinoa HOM05D006671 ORTHO05D008637 6.7e-147 525.0 486 56.4
PSO170G0973 Papaver somniferum HOM05D006671 ORTHO05D008637 6.7e-147 525.0 481 58.4
AUR62044064 Chenopodium quinoa HOM05D006671 ORTHO05D008637 1.2e-143 514.2 472 56.8
Nitab4.5_0000357g0220 Nicotiana tabacum HOM05D006671 ORTHO05D008637 3.2e-141 506.1 538 51.3
unitig_699.g19656 Utricularia gibba HOM05D006671 ORTHO05D001254 4.2e-141 505.8 539 50.3
Nitab4.5_0003469g0010 Nicotiana tabacum HOM05D006671 ORTHO05D008637 8.8e-139 498.0 544 50.7
Dinv20369 Davidia involucrata HOM05D006671 ORTHO05D008637 4.4e-138 495.7 365 64.4
SEGI_35568 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 6.8e-131 471.9 442 54.3
Peaxi162Scf00177g00616 Petunia axillaris HOM05D006671 ORTHO05D008637 7.5e-122 441.8 538 47.0
Ca_23471_v3 Cicer arietinum L. HOM05D006671 ORTHO05D008637 3.9e-118 429.5 468 50.4
SMO347G0345 Selaginella moellendorffii HOM05D006671 ORTHO05D008637 4.0e-115 419.5 543 42.7
Pp3c21_8010 Physcomitrium patens HOM05D006671 ORTHO05D008637 1.3e-113 414.5 541 43.8
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 2.9e-113 413.3 353 60.1
VMungo0331G0057 Vigna mungo HOM05D006671 ORTHO05D008637 1.6e-111 407.5 301 65.1
AagrBONN_evm.TU.Sc2ySwM_362.1979 Anthoceros agrestis HOM05D006671 ORTHO05D008637 1.2e-108 397.9 541 41.2
QL03p047059 Quercus lobata HOM05D006671 ORTHO05D008637 5.4e-104 382.5 267 67.8
Hma1.2p1_1104F.1_g257490 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 9.5e-101 371.7 256 68.8
QL03p047068 Quercus lobata HOM05D006671 ORTHO05D008637 6.9e-91 339.0 269 65.1
Mapoly0048s0109 Marchantia polymorpha HOM05D006671 ORTHO05D008637 2.1e-87 327.4 539 35.8
Hma1.2p1_1104F.1_g257500 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 5.3e-83 312.8 268 60.4
Gohir.A13G116750 Gossypium hirsutum HOM05D006671 ORTHO05D008637 9.0e-83 312.0 209 69.4
Gohir.A13G116801 Gossypium hirsutum HOM05D006671 ORTHO05D008637 3.4e-82 310.1 256 60.2
BcaNung02916 Brassica carinata HOM05D006671 ORTHO05D008637 1.1e-77 295.0 502 38.0
Oeu006761.2 Olea europaea HOM05D006671 ORTHO05D008637 1.1e-77 295.0 283 52.3
THA.LOC104803433 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 9.3e-72 275.4 188 69.1
FAN02G1271 Fragaria x ananassa HOM05D006671 ORTHO05D008637 2.5e-69 267.3 314 47.8
MD17G1156100 Malus domestica HOM05D006671 ORTHO05D008637 1.6e-68 264.6 439 39.0
SEGI_04788 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 8.7e-62 242.3 266 48.9
ATR0006G018 Amborella trichopoda HOM05D006671 ORTHO05D008637 2.5e-61 240.7 271 48.0
Actinidia21851 Actinidia chinensis HOM05D006671 ORTHO05D008637 2.2e-52 211.1 203 54.7
MCO09G741 Micromonas commoda HOM05D006671 ORTHO05D008637 3.2e-40 170.6 429 32.2
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 9.4e-40 169.1 309 36.6
Hund05690 Selenicereus undatus HOM05D006671 ORTHO05D008637 1.4e-38 165.2 126 67.5
Actinidia21852 Actinidia chinensis HOM05D006671 ORTHO05D008637 3.7e-36 157.1 125 59.2
FAN05G4676 Fragaria x ananassa HOM05D006671 ORTHO05D008637 4.7e-31 140.2 112 65.2
Lsat_1_v5_gn_2_122021 Lactuca sativa HOM05D006671 ORTHO05D008637 6.6e-17 93.2 140 43.6
C01p50010 Brassica napus HOM05D010519 ORTHO05D027459 1.9e-16 91.7 159 39.0
BolC1t04958H Brassica oleracea HOM05D010519 ORTHO05D027459 1.9e-16 91.7 159 39.0
BcaC09g48416 Brassica carinata HOM05D006671 ORTHO05D027459 1.8e-14 85.1 112 45.5
AUR62027724 Chenopodium quinoa HOM05D008167 ORTHO05D010296 2.3e-14 84.7 329 24.0
Cfa022026 Carpinus fangiana HOM05D002393 ORTHO05D123579 9.8e-13 79.3 231 28.1
Lsat_1_v5_gn_1_119700 Lactuca sativa HOM05D006671 ORTHO05D011576 3.7e-12 77.4 117 38.5
Lsat_1_v5_gn_2_91241 Lactuca sativa HOM05D006671 ORTHO05D011576 8.3e-12 76.3 87 44.8
Pp3c20_15640 Physcomitrium patens HOM05D008167 ORTHO05D010296 1.4e-11 75.5 373 23.9
TPR.G32489 Trifolium pratense HOM05D008167 ORTHO05D010296 2.7e-10 71.2 303 25.7
QL12p036142 Quercus lobata HOM05D008167 ORTHO05D010296 3.5e-10 70.9 336 23.5
EL10Ac1g01257 Beta vulgaris HOM05D008167 ORTHO05D010296 5.9e-10 70.1 331 22.1
CSS0027715 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 1.0e-09 69.3 36 77.8
arahy.Tifrunner.gnm1.ann1.R32LA5 Arachis hypogaea HOM05D008167 ORTHO05D010296 8.6e-09 66.2 356 24.2
Lsat_1_v5_gn_0_9700 Lactuca sativa HOM05D008167 ORTHO05D010296 1.1e-08 65.9 356 23.0
PSO133G0102 Papaver somniferum HOM05D008167 ORTHO05D010296 1.1e-08 65.9 382 22.5
Thecc.08G110600 Theobroma cacao HOM05D008167 ORTHO05D010296 3.3e-08 64.3 327 23.2
Lj3g0012000 Lotus japonicus HOM05D008167 ORTHO05D010296 4.3e-08 63.9 330 23.6
VMungo0331G0414 Vigna mungo HOM05D008167 ORTHO05D010296 1.2e-07 62.4 362 24.6
Manes.02G154800 Manihot esculenta HOM05D008167 ORTHO05D010296 1.6e-07 62.0 345 22.6
HanXRQChr04g0111501 Helianthus annuus HOM05D008167 ORTHO05D010296 3.6e-07 60.8 361 23.0
TAR628G0982 Trochodendron aralioides HOM05D008167 ORTHO05D010296 8.0e-07 59.7 347 20.7
Nn1g05299 Nelumbo nucifera HOM05D008167 ORTHO05D010296 1.0e-06 59.3 348 22.4
Lj4C719T5 Lonicera japonica HOM05D008167 ORTHO05D010296 1.4e-06 58.9 342 23.4
PSO541G2703 Papaver somniferum HOM05D008167 ORTHO05D010296 5.2e-06 57.0 396 21.2
Cfa015915 Carpinus fangiana HOM05D008167 ORTHO05D010296 8.9e-06 56.2 342 21.9


User provided reference genes

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