Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G006000 Manihot esculenta HOM05D007414 ORTHO05D009482 2.2e-249 865.1 441 100.0
Potri.001G027600 Populus trichocarpa HOM05D007414 ORTHO05D009482 6.3e-167 591.3 390 76.9
QL04p017831 Quercus lobata HOM05D007414 ORTHO05D009482 6.5e-164 581.3 448 67.9
COL.COLO4_20658 Corchorus olitorius HOM05D007414 ORTHO05D009482 3.2e-163 578.9 442 68.8
Duzib114G0511 Durio zibethinus HOM05D007414 ORTHO05D009482 1.6e-162 576.6 440 68.6
Sabra01G0020000 Salix brachista HOM05D007414 ORTHO05D009482 3.0e-161 572.4 422 70.6
Thecc.10G154500 Theobroma cacao HOM05D007414 ORTHO05D009482 6.7e-161 571.2 437 68.2
CiPaw.13G013700 Carya illinoinensis HOM05D007414 ORTHO05D009482 3.3e-160 568.9 438 68.5
MD02G1287000 Malus domestica HOM05D007414 ORTHO05D009482 7.4e-160 567.8 427 70.0
CANSAT56G3550 Cannabis sativa HOM05D007414 ORTHO05D009482 5.3e-158 561.6 434 69.4
TWI15G0498 Tripterygium wilfordii HOM05D007414 ORTHO05D009482 9.1e-158 560.8 433 68.6
GSVIVG01013487001 Vitis vinifera HOM05D007414 ORTHO05D009482 2.6e-157 559.3 426 69.0
TAR623G0974 Trochodendron aralioides HOM05D007414 ORTHO05D009482 8.5e-156 554.3 423 68.1
Gohir.D10G192600 Gossypium hirsutum HOM05D007414 ORTHO05D009482 1.1e-155 553.9 435 67.1
Gorai.011G215300 Gossypium raimondii HOM05D007414 ORTHO05D009482 4.2e-155 552.0 435 67.4
Gohir.A10G185400 Gossypium hirsutum HOM05D007414 ORTHO05D009482 2.7e-154 549.3 437 66.6
Hma1.2p1_1202F.1_g266840 Hydrangea macrophylla HOM05D007414 ORTHO05D009482 3.6e-154 548.9 394 71.3
Atru.chr12.1333 Acer truncatum HOM05D007414 ORTHO05D009482 6.1e-154 548.1 418 68.2
Gorai.010G216100 Gossypium raimondii HOM05D007414 ORTHO05D009482 6.1e-154 548.1 445 64.7
RcHm_v2.0_Chr1g0324301 Rosa chinensis HOM05D007414 ORTHO05D009482 7.9e-154 547.7 435 66.9
FAN06G2659 Fragaria x ananassa HOM05D007414 ORTHO05D009482 1.1e-152 543.9 429 66.4
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 2.0e-152 543.1 434 65.9
Eucgr.G03234 Eucalyptus grandis HOM05D007414 ORTHO05D009482 4.4e-152 542.0 424 67.2
FAN03G2686 Fragaria x ananassa HOM05D007414 ORTHO05D009482 9.7e-152 540.8 429 66.0
Medtr3g014680 Medicago truncatula HOM05D007414 ORTHO05D009482 2.2e-151 539.7 419 68.3
FAN10G2712 Fragaria x ananassa HOM05D007414 ORTHO05D009482 3.7e-151 538.9 424 66.3
Nn7g36686 Nelumbo nucifera HOM05D007414 ORTHO05D009482 3.7e-151 538.9 404 68.1
PGR031G2549 Punica granatum HOM05D007414 ORTHO05D009482 4.8e-151 538.5 439 64.0
Dinv22037 Davidia involucrata HOM05D007414 ORTHO05D009482 9.1e-150 534.3 398 69.8
CsaV3_5G024500 Cucumis sativus L. HOM05D007414 ORTHO05D009482 5.9e-149 531.6 435 64.1
CSS0022385 Camellia sinensis var. sinensis HOM05D007414 ORTHO05D009482 7.7e-149 531.2 388 69.8
Glyma.04G137000 Glycine max HOM05D007414 ORTHO05D009482 2.9e-148 529.3 403 68.7
Actinidia02265 Actinidia chinensis HOM05D007414 ORTHO05D009482 8.5e-148 527.7 417 66.7
VMungo1080G1369 Vigna mungo HOM05D007414 ORTHO05D009482 8.5e-148 527.7 411 68.6
Phvul.005G026400 Phaseolus vulgaris HOM05D007414 ORTHO05D009482 7.2e-147 524.6 411 67.4
vmacro12698 Vaccinium macrocarpon HOM05D007414 ORTHO05D009482 9.4e-147 524.2 441 62.6
Lj3g0021878 Lotus japonicus HOM05D007414 ORTHO05D009482 2.3e-145 519.6 374 70.9
Glyma.11G155300 Glycine max HOM05D007414 ORTHO05D009482 6.7e-145 518.1 427 64.9
arahy.Tifrunner.gnm1.ann1.GMDI7B Arachis hypogaea HOM05D007414 ORTHO05D009482 5.7e-144 515.0 418 65.3
Ciclev10028543m.g Citrus clementina HOM05D007414 ORTHO05D009482 1.3e-143 513.8 400 66.0
Solyc01g096400.4 Solanum lycopersicum HOM05D007414 ORTHO05D009482 6.3e-143 511.5 379 67.8
Lalb_Chr25g0282101 Lupinus albus HOM05D007414 ORTHO05D009482 1.1e-142 510.8 437 63.6
PGSC0003DMG400018334 Solanum tuberosum HOM05D007414 ORTHO05D009482 1.1e-142 510.8 429 62.5
Cc02_g30210 Coffea canephora HOM05D007414 ORTHO05D009482 2.4e-142 509.6 431 61.7
arahy.Tifrunner.gnm1.ann1.XZAR1L Arachis hypogaea HOM05D007414 ORTHO05D009482 1.2e-141 507.3 415 64.1
DCAR_031835 Daucus carota HOM05D007414 ORTHO05D009482 1.2e-141 507.3 424 63.0
Sopen01g040130 Solanum pennellii HOM05D007414 ORTHO05D009482 1.2e-141 507.3 436 61.5
ClCG01G007530 Citrullus lanatus HOM05D007414 ORTHO05D009482 5.9e-141 505.0 396 65.7
MELO3C005149.2 Cucumis melo HOM05D007414 ORTHO05D009482 5.9e-141 505.0 465 60.2
ECA234G1800 Erigeron canadensis HOM05D007414 ORTHO05D009482 1.1e-139 500.7 429 62.0
Potri.003G196200 Populus trichocarpa HOM05D007414 ORTHO05D009482 1.9e-139 500.0 432 61.6
MSTRG.20514 Avicennia marina HOM05D007414 ORTHO05D009482 6.1e-138 495.0 404 63.4
Manes.15G192920 Manihot esculenta HOM05D007414 ORTHO05D009482 1.4e-137 493.8 395 67.8
CAN.G1045.37 Capsicum annuum HOM05D007414 ORTHO05D009482 4.0e-137 492.3 422 61.6
Nitab4.5_0004955g0030 Nicotiana tabacum HOM05D007414 ORTHO05D009482 2.0e-136 490.0 438 60.5
HanXRQChr16g0525321 Helianthus annuus HOM05D007414 ORTHO05D009482 4.8e-135 485.3 409 62.6
Lsat_1_v5_gn_4_29901 Lactuca sativa HOM05D007414 ORTHO05D009482 6.3e-135 485.0 394 65.0
Nitab4.5_0000307g0260 Nicotiana tabacum HOM05D007414 ORTHO05D009482 1.1e-134 484.2 417 62.1
Gohir.A06G174800 Gossypium hirsutum HOM05D007414 ORTHO05D009482 9.1e-134 481.1 385 65.2
Gohir.D06G184800 Gossypium hirsutum HOM05D007414 ORTHO05D009482 2.7e-133 479.6 385 65.2
PSO339G0457 Papaver somniferum HOM05D007414 ORTHO05D009482 2.7e-133 479.6 399 63.4
AUR62032647 Chenopodium quinoa HOM05D007414 ORTHO05D009482 5.9e-133 478.4 420 61.2
PSO384G0147 Papaver somniferum HOM05D007414 ORTHO05D009482 5.9e-133 478.4 399 63.4
THA.LOC104826727 Tarenaya hassleriana HOM05D007414 ORTHO05D009482 3.2e-131 472.6 387 63.3
Rhsim01G0124300 Rhododendron simsii HOM05D007414 ORTHO05D009482 4.2e-131 472.2 384 64.3
Sed0006433 Sechium edule HOM05D007414 ORTHO05D009482 3.6e-130 469.2 339 68.7
Sc11g0006450 Simmondsia chinensis HOM05D007414 ORTHO05D009482 1.2e-125 454.1 427 60.0
Nn7g36678 Nelumbo nucifera HOM05D007414 ORTHO05D009482 3.5e-125 452.6 410 60.7
Aqoxy1G00360 Aquilegia oxysepala HOM05D007414 ORTHO05D009482 1.3e-124 450.7 406 61.3
EL10Ac2g02800 Beta vulgaris HOM05D007414 ORTHO05D009482 2.1e-122 443.4 455 55.6
Haze_03038 Corylus avellana HOM05D007414 ORTHO05D009482 6.1e-122 441.8 426 57.5
Peaxi162Scf00767g00524 Petunia axillaris HOM05D007414 ORTHO05D009482 1.0e-121 441.0 369 61.8
Ah.12g062800 Amaranthus hybridus HOM05D007414 ORTHO05D009482 9.2e-118 427.9 352 63.1
ATR0745G014 Amborella trichopoda HOM05D007414 ORTHO05D009482 1.5e-112 410.6 441 53.1
Hund13359 Selenicereus undatus HOM05D007414 ORTHO05D009482 2.3e-108 396.7 385 56.9
Psat5g222240 Pisum sativum HOM05D007414 ORTHO05D009482 1.4e-105 387.5 289 67.5
AUR62026859 Chenopodium quinoa HOM05D007414 ORTHO05D009482 4.1e-102 375.9 309 61.2
Dinv32026 Davidia involucrata HOM05D007414 ORTHO05D009482 5.2e-97 359.0 265 68.7
SEGI_40936 Sequoiadendron giganteum HOM05D007414 ORTHO05D009482 5.8e-96 355.5 391 51.4
Prupe.2G036300 Prunus persica HOM05D007414 ORTHO05D009482 9.9e-96 354.8 295 64.7
Migut.O00949 Erythranthe guttata HOM05D007414 ORTHO05D009482 3.1e-81 306.6 258 61.2
MBI19_g25612_MAGBIO Magnolia biondii HOM05D007414 ORTHO05D009482 4.8e-74 282.7 274 58.0
AagrBONN_evm.TU.Sc2ySwM_362.1466 Anthoceros agrestis HOM05D007414 ORTHO05D009482 2.5e-67 260.4 425 39.5
Pp3c11_910 Physcomitrium patens HOM05D007414 ORTHO05D009482 3.2e-62 243.4 372 40.3
Mapoly0007s0139 Marchantia polymorpha HOM05D007414 ORTHO05D009482 7.1e-62 242.3 437 36.4
Zm00001eb128490 Zea mays HOM05D007414 ORTHO05D009482 3.1e-57 226.9 244 53.3
DCAR_000332 Daucus carota HOM05D007414 ORTHO05D009482 7.2e-54 215.7 174 65.5
Os01g0272800 Oryza sativa ssp. japonica HOM05D007414 ORTHO05D009482 9.7e-51 205.3 213 53.5
Migut.B01233 Erythranthe guttata HOM05D007414 ORTHO05D009482 1.4e-41 174.9 146 63.0
TPR.G1409 Trifolium pratense HOM05D007414 ORTHO05D009482 1.2e-40 171.8 152 61.8
Nitab4.5_0008639g0030 Nicotiana tabacum HOM05D007414 ORTHO05D009482 4.8e-34 149.8 122 64.8
Lsat_1_v5_gn_0_2021 Lactuca sativa HOM05D007414 ORTHO05D009482 4.5e-16 90.1 81 53.1
PRCOL_00005884 Prasinoderma coloniale HOM05D007414 ORTHO05D009482 5.7e-11 73.2 258 28.7
Sabra03G0146300 Salix brachista HOM05D007414 ORTHO05D009482 1.3e-10 72.0 41 78.0
SEGI_36011 Sequoiadendron giganteum HOM05D007414 ORTHO05D009482 2.8e-10 70.9 45 75.6
Lsat_1_v5_gn_3_3821 Lactuca sativa HOM05D007414 ORTHO05D009482 1.1e-09 68.9 49 65.3
MD02G1286500 Malus domestica HOM05D007414 ORTHO05D009482 1.1e-09 68.9 73 52.1
Lsat_1_v5_gn_3_19721 Lactuca sativa HOM05D006098 ORTHO05D007470 2.4e-09 67.8 433 21.9
HanXRQChr17g0537231 Helianthus annuus HOM05D006098 ORTHO05D007470 5.4e-09 66.6 376 23.1
Oeu046790.1 Olea europaea HOM05D006098 ORTHO05D007470 1.2e-08 65.5 394 23.6
TPR.G34603 Trifolium pratense HOM05D007414 ORTHO05D009482 3.5e-08 63.9 39 71.8
Oeu014631.1 Olea europaea HOM05D007414 ORTHO05D009482 4.5e-08 63.5 58 63.8
Cpa.g.sc71.63 Carica papaya HOM05D006098 ORTHO05D007470 1.0e-07 62.4 402 22.9
Solyc08g005560.3 Solanum lycopersicum HOM05D006098 ORTHO05D007470 1.7e-07 61.6 454 23.1
Oeu057164.1 Olea europaea HOM05D006098 ORTHO05D007470 2.3e-07 61.2 378 22.5
Nitab4.5_0011712g0010 Nicotiana tabacum HOM05D006098 ORTHO05D007470 2.9e-07 60.8 431 22.7
Aa31LG6G1850 Aethionema arabicum HOM05D006098 ORTHO05D007470 3.8e-07 60.5 272 25.4
AUR62010477 Chenopodium quinoa HOM05D006098 ORTHO05D007470 3.8e-07 60.5 378 22.8
Cre03.g145067 Chlamydomonas reinhardtii HOM05D007414 ORTHO05D009482 8.6e-07 59.3 67 47.8
Potri.003G033300 Populus trichocarpa HOM05D006098 ORTHO05D007470 8.6e-07 59.3 385 23.9
CAN.G884.9 Capsicum annuum HOM05D006098 ORTHO05D007470 1.1e-06 58.9 286 24.8
HanXRQChr13g0411151 Helianthus annuus HOM05D006098 ORTHO05D007470 1.1e-06 58.9 368 22.8
Sopen08g001580 Solanum pennellii HOM05D006098 ORTHO05D007470 1.1e-06 58.9 453 22.7
PGSC0003DMG400018483 Solanum tuberosum HOM05D006098 ORTHO05D007470 1.5e-06 58.5 286 24.5
CAN.G884.14 Capsicum annuum HOM05D006098 ORTHO05D007470 1.9e-06 58.2 286 24.8
AUR62030416 Chenopodium quinoa HOM05D006098 ORTHO05D007470 1.9e-06 58.2 302 23.8
Oeu042191.1 Olea europaea HOM05D006098 ORTHO05D007470 1.9e-06 58.2 296 23.6
Oeu042192.1 Olea europaea HOM05D006098 ORTHO05D007470 1.9e-06 58.2 296 23.6
vmacro00080 Vaccinium macrocarpon HOM05D006098 ORTHO05D007470 1.9e-06 58.2 297 25.3
Potri.001G193400 Populus trichocarpa HOM05D006098 ORTHO05D007470 2.5e-06 57.8 380 23.4
RcHm_v2.0_Chr6g0304491 Rosa chinensis HOM05D006098 ORTHO05D007470 2.5e-06 57.8 294 23.5
Cc08_g05440 Coffea canephora HOM05D006098 ORTHO05D007470 3.3e-06 57.4 381 22.6
ECA240G1264 Erigeron canadensis HOM05D006098 ORTHO05D007470 3.3e-06 57.4 276 23.6
Migut.A00537 Erythranthe guttata HOM05D006098 ORTHO05D007470 3.3e-06 57.4 296 23.6
HanXRQChr03g0081041 Helianthus annuus HOM05D006098 ORTHO05D007470 3.3e-06 57.4 296 23.6
Nitab4.5_0000985g0060 Nicotiana tabacum HOM05D006098 ORTHO05D007470 4.3e-06 57.0 289 25.3
Thecc.03G318000 Theobroma cacao HOM05D006098 ORTHO05D007470 4.3e-06 57.0 382 22.8
ECA246G0847 Erigeron canadensis HOM05D006098 ORTHO05D007470 7.3e-06 56.2 301 22.9
SGA_v2.0_scaffold111G31352 Striga asiatica HOM05D006098 ORTHO05D007470 7.3e-06 56.2 303 22.4
Duzib205G1615 Durio zibethinus HOM05D006098 ORTHO05D007470 9.5e-06 55.8 294 23.5
Nitab4.5_0000030g0370 Nicotiana tabacum HOM05D006098 ORTHO05D007470 9.5e-06 55.8 376 22.3


User provided reference genes

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